##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088583_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4027921 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.356209319894806 31.0 31.0 34.0 30.0 34.0 2 31.550250116623438 31.0 31.0 34.0 30.0 34.0 3 31.613129949668824 31.0 31.0 34.0 30.0 34.0 4 35.35575896349506 37.0 35.0 37.0 33.0 37.0 5 35.23766255594387 37.0 35.0 37.0 33.0 37.0 6 35.29675954419166 37.0 35.0 37.0 32.0 37.0 7 35.1646422558933 37.0 35.0 37.0 32.0 37.0 8 35.18941930589006 37.0 35.0 37.0 32.0 37.0 9 36.741899853547274 39.0 37.0 39.0 32.0 39.0 10 36.54824511205657 38.0 35.0 39.0 32.0 39.0 11 36.6216167099603 38.0 35.0 39.0 32.0 39.0 12 36.49783250465935 38.0 35.0 39.0 32.0 39.0 13 36.56683708543439 38.0 35.0 39.0 32.0 39.0 14 37.515870594284245 39.0 36.0 41.0 32.0 41.0 15 37.47028280842648 39.0 36.0 41.0 32.0 41.0 16 37.3470768170478 39.0 36.0 41.0 32.0 41.0 17 37.378115409909974 39.0 36.0 40.0 32.0 41.0 18 37.34850757996495 39.0 36.0 40.0 32.0 41.0 19 37.377490273518276 39.0 36.0 40.0 32.0 41.0 20 37.2515277732607 39.0 36.0 40.0 31.0 41.0 21 37.14254723466523 39.0 36.0 40.0 31.0 41.0 22 36.97970590783682 39.0 36.0 40.0 31.0 41.0 23 36.83906213652155 39.0 36.0 40.0 30.0 41.0 24 36.69617303815045 39.0 35.0 40.0 30.0 41.0 25 36.48515176936191 38.0 35.0 40.0 30.0 41.0 26 36.62802199943842 39.0 35.0 40.0 30.0 41.0 27 36.541007383213326 39.0 35.0 40.0 30.0 41.0 28 36.41523331763458 39.0 35.0 40.0 30.0 41.0 29 36.25920418995308 38.0 35.0 40.0 30.0 41.0 30 36.153349829850185 38.0 35.0 40.0 30.0 41.0 31 35.967191014918114 38.0 35.0 40.0 29.0 41.0 32 35.84459948444868 38.0 35.0 40.0 29.0 41.0 33 35.63141705112886 38.0 34.0 40.0 27.0 41.0 34 35.48909002932282 38.0 34.0 40.0 27.0 41.0 35 35.29848996541889 38.0 34.0 40.0 26.0 41.0 36 35.162631541184645 38.0 34.0 40.0 25.0 41.0 37 35.00269320078522 38.0 34.0 40.0 25.0 41.0 38 34.917701216086414 38.0 33.0 40.0 25.0 41.0 39 34.76967745891739 38.0 33.0 40.0 24.0 41.0 40 34.58872976902973 38.0 33.0 40.0 23.0 41.0 41 34.46589170939549 38.0 33.0 40.0 23.0 41.0 42 34.239471181286824 38.0 33.0 40.0 22.0 41.0 43 33.87708919812479 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 5.0 14 14.0 15 34.0 16 96.0 17 206.0 18 498.0 19 1028.0 20 2135.0 21 4090.0 22 7412.0 23 12272.0 24 19512.0 25 29617.0 26 42012.0 27 57971.0 28 76904.0 29 98577.0 30 123195.0 31 150474.0 32 181784.0 33 220603.0 34 269372.0 35 329126.0 36 425065.0 37 586578.0 38 790997.0 39 598341.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.569142244845416 22.29331210815704 14.262221130950682 22.875324516046863 2 19.8404834652914 23.930583544215487 33.78708271587253 22.441850274620577 3 20.842762308396814 25.1082133934603 31.960035958997207 22.08898833914568 4 14.872411847203557 17.14884676238685 35.690719852747854 32.288021537661734 5 13.0485925617707 38.799345866018726 34.57788769938636 13.574173872824218 6 32.51694856974603 37.43045109375283 13.72263755917755 16.329962777323587 7 26.251855485745622 32.68207097408315 21.759786252014376 19.30628728815684 8 27.09405174530484 34.77386969605411 18.99654933649394 19.135529222147106 9 24.7971347998136 14.278929502341281 21.526862120682107 39.397073577163006 10 16.63098655609184 27.484352349512314 33.504207257292286 22.38045383710356 11 33.717021758867666 22.326530237311008 23.206115512195993 20.750332491625333 12 20.736429537719335 27.05226840347663 30.985140969745935 21.226161089058103 13 31.410000345091177 20.751251079651265 26.266950121414993 21.571798453842568 14 20.60139709790733 22.45925379370648 27.723756250432917 29.215592857953272 15 23.43534046472113 29.23014130614776 25.032119547528364 22.302398681602742 16 22.165826986179717 27.914574292792732 26.563405786756988 23.35619293427056 17 22.024016856338545 26.627185587800756 27.217316327703543 24.131481228157156 18 22.84642623328511 25.447867522724504 29.341240803878726 22.364465440111662 19 23.05750286562224 24.876381637077788 30.17588974560325 21.89022575169672 20 23.76791898351532 24.526151332163664 30.053047217162405 21.652882467158616 21 22.89081637897069 25.34458843656566 30.321473534361772 21.443121650101876 22 21.74367372150546 25.74427353465969 29.960046386212642 22.552006357622208 23 22.441254433738894 25.88444510207623 30.747921818724844 20.926378645460026 24 22.525143864539547 25.88481750262729 28.710493577207696 22.87954505562547 25 22.605234809719455 25.835834416812048 29.607854771729635 21.951076001738862 26 22.42961070984262 26.441854246893126 29.61361456691926 21.514920476344994 27 21.656283725524904 26.496274380753743 29.287639951230425 22.559801942490928 28 21.84218608061082 26.30999962511678 29.554750453149403 22.293063841123 29 22.084122305278576 26.266106013499275 29.116360524449213 22.533411156772935 30 21.990972514108396 26.359528898406897 30.28261974353519 21.36687884394952 31 22.430181724020905 26.031046785674295 30.17268710086419 21.366084389440605 32 22.099912088643247 25.832954519217232 29.359240163846312 22.707893228293205 33 21.92168118490904 26.036856234270733 29.871092307917657 22.170370272902574 34 21.40903458632878 26.409579532468484 30.249674708118658 21.93171117308408 35 21.134029192727464 27.9352301100245 29.36619164079931 21.564549056448723 36 22.767874543716225 26.067790306711576 29.31065430528553 21.853680844286668 37 21.87163055084745 26.527978081000096 29.265916585752304 22.33447478240015 38 21.799856551307734 25.31879349172936 30.46301057046551 22.4183393864974 39 21.26978160693817 25.31874383832255 30.948074701564405 22.463399853174877 40 20.56145093213099 25.977917640390665 30.58155807921754 22.879073348260803 41 21.544091852844186 24.897956042335487 30.70757842569405 22.850373679126278 42 20.52684250758642 26.53932388445553 30.211242971249934 22.72259063670812 43 20.810909647930036 26.218711836701864 29.642686636604836 23.32769187876326 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 248.0 1 472.0 2 696.0 3 1549.0 4 2402.0 5 2402.0 6 4253.5 7 6105.0 8 6977.0 9 7849.0 10 11584.5 11 15320.0 12 15320.0 13 28910.0 14 42500.0 15 66843.5 16 91187.0 17 82617.0 18 74047.0 19 74047.0 20 81159.5 21 88272.0 22 71142.0 23 54012.0 24 60188.5 25 66365.0 26 66365.0 27 72955.0 28 79545.0 29 88669.5 30 97794.0 31 108415.5 32 119037.0 33 119037.0 34 133097.0 35 147157.0 36 163444.5 37 179732.0 38 190822.0 39 201912.0 40 201912.0 41 210967.5 42 220023.0 43 234042.5 44 248062.0 45 260082.0 46 272102.0 47 272102.0 48 333630.0 49 395158.0 50 377620.0 51 360082.0 52 336677.0 53 313272.0 54 313272.0 55 280837.0 56 248402.0 57 216321.0 58 184240.0 59 164068.0 60 143896.0 61 143896.0 62 128281.0 63 112666.0 64 97717.0 65 82768.0 66 70555.0 67 58342.0 68 58342.0 69 50217.0 70 42092.0 71 35493.0 72 28894.0 73 23889.5 74 18885.0 75 18885.0 76 14993.5 77 11102.0 78 8703.5 79 6305.0 80 4905.0 81 3505.0 82 3505.0 83 2659.5 84 1814.0 85 1405.5 86 997.0 87 760.0 88 523.0 89 523.0 90 477.0 91 431.0 92 269.5 93 108.0 94 79.5 95 51.0 96 51.0 97 32.5 98 14.0 99 10.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4027921.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.58947975752643 #Duplication Level Percentage of deduplicated Percentage of total 1 77.99023471312161 36.335244614517144 2 11.875687937593622 11.065642455504378 3 4.148125927439759 5.797770867843756 4 1.8266787447817745 3.404160496140571 5 1.0253871706283824 2.388612741480916 6 0.6139068057850109 1.716095922067709 7 0.4097448106607302 1.3362858293420714 8 0.2929084521207336 1.0917161920709855 9 0.22032930425230332 0.9238524894407312 >10 1.3475904050971033 11.984464259264955 >50 0.14123257896359234 4.555379859965467 >100 0.09573270237944685 8.746220376756844 >500 0.007635124243035453 2.508099588986402 >1k 0.00427139816256403 3.714575405501945 >5k 3.203548621923022E-4 1.1744862167227468 >10k+ 2.135699081282015E-4 3.2573926843932433 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 45121 1.1202056842723578 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 39748 0.986811806884991 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 29199 0.7249149126807601 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16881 0.4190995801556187 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9012 0.22373825107294804 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8603 0.21358412938088903 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8597 0.21343516916046765 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7997 0.1985391471183273 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7226 0.17939775879417694 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5780 0.14349834567261868 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4619 0.11467454302107713 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4546 0.11286219367261671 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4204 0.10437146110859673 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 4.96534068071345E-5 0.0 0.0 0.0 0.0 7 7.448011021070175E-5 0.0 0.0 2.482670340356725E-5 0.0 8 7.448011021070175E-5 0.0 0.0 2.482670340356725E-5 0.0 9 7.448011021070175E-5 0.0 0.0 9.9306813614269E-5 0.0 10 1.2413351701783624E-4 0.0 0.0 1.7378692382497075E-4 0.0 11 1.2413351701783624E-4 0.0 0.0 3.2274714424637425E-4 0.0 12 1.2413351701783624E-4 0.0 0.0 5.710141782820468E-4 0.0 13 1.2413351701783624E-4 0.0 0.0 6.95147695299883E-4 0.0 14 1.7378692382497075E-4 0.0 0.0 7.94454508914152E-4 0.0 15 1.7378692382497075E-4 0.0 0.0 0.0010675482463533917 0.0 16 1.7378692382497075E-4 0.0 0.0 0.0014399487974069004 0.0 17 1.7378692382497075E-4 0.0 0.0 0.0022592300097246196 0.0 18 1.7378692382497075E-4 0.0 0.0 0.002681283967585263 0.0 19 1.7378692382497075E-4 0.0 0.0 0.0035253918833065495 0.0 20 1.98613627228538E-4 0.0 0.0 0.00595840881685614 0.0 21 1.98613627228538E-4 0.0 0.0 0.010377562022691111 0.0 22 1.98613627228538E-4 0.0 0.0 0.01698146512804 0.0 23 1.98613627228538E-4 0.0 0.0 0.021251658113453566 0.0 24 2.2344033063210526E-4 0.0 0.0 0.028550708914102337 0.0 25 2.2344033063210526E-4 0.0 0.0 0.03356570300162292 0.0 26 2.2344033063210526E-4 0.0 0.0 0.04190747534522152 0.0 27 2.2344033063210526E-4 0.0 0.0 0.08624796762399263 0.0 28 2.2344033063210526E-4 0.0 0.0 0.1828486705672728 0.0 29 2.2344033063210526E-4 0.0 0.0 0.3044250371345416 0.0 30 2.2344033063210526E-4 0.0 0.0 0.4668413308006786 0.0 31 2.2344033063210526E-4 0.0 0.0 0.7125263876823801 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12905 0.0 23.151878 1 TTAACGG 530 0.0 15.707547 35 GTATTGG 1745 0.0 15.690545 1 GTATCAA 19240 0.0 15.509615 2 GTATTAG 1010 0.0 15.20297 1 TTGGACC 2535 0.0 14.668639 4 CTAATAC 1040 0.0 14.408654 3 TAATACT 1070 0.0 14.177569 4 TGGACCC 2405 0.0 13.923077 5 ATACTGG 1020 0.0 13.6029415 6 GGACCGT 750 0.0 13.566666 6 ATTGGAC 2060 0.0 13.56068 3 TAACGGC 605 0.0 13.454545 36 ATTAGAG 870 0.0 13.396551 3 TCTATAC 360 0.0 13.361111 3 ACCGTTA 555 0.0 13.333333 8 GACCGTT 570 0.0 13.307017 7 CTCTAAT 865 0.0 13.260115 1 TAAACGT 210 2.046363E-9 13.214285 4 GGACCCT 2645 0.0 13.149339 6 >>END_MODULE