##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088579_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8894656 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.595393346296923 31.0 31.0 34.0 30.0 34.0 2 31.779433516034796 31.0 31.0 34.0 30.0 34.0 3 31.852581595061125 31.0 31.0 34.0 30.0 34.0 4 35.559097282683 37.0 35.0 37.0 33.0 37.0 5 35.46308154019672 37.0 35.0 37.0 33.0 37.0 6 35.495145961799984 37.0 35.0 37.0 33.0 37.0 7 35.359952875074654 37.0 35.0 37.0 33.0 37.0 8 35.38385138222321 37.0 35.0 37.0 33.0 37.0 9 36.970283954770146 39.0 37.0 39.0 33.0 39.0 10 36.82429371074047 39.0 37.0 39.0 32.0 39.0 11 36.870799612711274 39.0 37.0 39.0 32.0 39.0 12 36.773072055850164 39.0 37.0 39.0 32.0 39.0 13 36.818531374344325 39.0 37.0 39.0 32.0 39.0 14 37.83093241604847 40.0 37.0 41.0 32.0 41.0 15 37.7875902114708 40.0 37.0 41.0 32.0 41.0 16 37.6801252347477 39.0 37.0 41.0 32.0 41.0 17 37.719917442563265 39.0 37.0 41.0 32.0 41.0 18 37.694340961584125 39.0 37.0 41.0 32.0 41.0 19 37.72318906993143 40.0 37.0 41.0 32.0 41.0 20 37.600860224386416 39.0 37.0 41.0 32.0 41.0 21 37.50167044121774 39.0 36.0 41.0 32.0 41.0 22 37.35222553857057 39.0 36.0 41.0 31.0 41.0 23 37.219102346397655 39.0 36.0 41.0 31.0 41.0 24 37.07465291518862 39.0 36.0 41.0 31.0 41.0 25 36.88145893444333 39.0 36.0 40.0 30.0 41.0 26 37.0202746458098 39.0 36.0 41.0 31.0 41.0 27 36.94648562012966 39.0 36.0 41.0 31.0 41.0 28 36.82340261388411 39.0 35.0 41.0 30.0 41.0 29 36.67224297375863 39.0 35.0 40.0 30.0 41.0 30 36.55482303081761 39.0 35.0 40.0 30.0 41.0 31 36.36530822552328 38.0 35.0 40.0 30.0 41.0 32 36.24566447538837 38.0 35.0 40.0 30.0 41.0 33 36.04047632645939 38.0 35.0 40.0 29.0 41.0 34 35.89807857661949 38.0 35.0 40.0 29.0 41.0 35 35.706765275689136 38.0 35.0 40.0 27.0 41.0 36 35.568782311536275 38.0 35.0 40.0 27.0 41.0 37 35.402075246080344 38.0 34.0 40.0 26.0 41.0 38 35.31275217388958 38.0 34.0 40.0 25.0 41.0 39 35.16855356744544 38.0 34.0 40.0 25.0 41.0 40 34.97955053011606 38.0 34.0 40.0 24.0 41.0 41 34.84768629613107 38.0 34.0 40.0 24.0 41.0 42 34.62594247602156 38.0 33.0 40.0 23.0 41.0 43 34.269098209081946 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 5.0 12 6.0 13 6.0 14 38.0 15 56.0 16 134.0 17 302.0 18 737.0 19 1647.0 20 3569.0 21 6972.0 22 12996.0 23 22187.0 24 35556.0 25 53978.0 26 79183.0 27 110284.0 28 149108.0 29 195089.0 30 245595.0 31 300719.0 32 366604.0 33 450609.0 34 554834.0 35 682206.0 36 885518.0 37 1242303.0 38 1693783.0 39 1800632.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.67427048331043 21.185417401190108 13.810314867713828 23.329997247785634 2 19.226342199181172 22.99525692730556 34.789001395894346 22.98939947761892 3 20.151695579907756 24.493190068283695 32.211746019182755 23.14336833262579 4 14.105593291072752 16.169158200159735 35.85714838212967 33.86810012663784 5 13.119765396210939 38.159530846386865 34.71965638693615 14.001047370466042 6 32.833737471128735 36.712234852028004 13.567641064477368 16.886386612365897 7 26.403584354470823 32.53065660999144 21.511152314378432 19.554606721159313 8 26.978525082926197 34.47703879722836 18.902372390792856 19.64206372905259 9 24.545187582296606 14.34267946956015 21.690956907158636 39.421176040984605 10 16.798018945308286 26.978839878686706 33.394332507069414 22.828808668935594 11 33.41630075407076 22.09810025255614 23.37921781348261 21.106381179890487 12 21.09292366112866 26.76462136365926 30.85855147180509 21.28390350340699 13 31.574981651904245 20.522187704617245 26.31457585318645 21.58825479029206 14 20.671603263802446 22.497755955935787 27.527371491376396 29.30326928888537 15 23.15545424128825 28.95108028910843 25.350581292857193 22.542884176746128 16 22.18755846206981 27.802851509940353 26.56009406097324 23.449495967016603 17 22.041380802135574 26.30342308909979 26.97217295418732 24.68302315457731 18 23.12064682434037 25.16073696385785 29.3236410716727 22.394975140129084 19 23.102175058821835 24.407453194367495 30.32913245886069 22.16123928794998 20 23.958981662697244 24.108273552119385 30.179379618503514 21.75336516667986 21 22.938031555127033 24.94332552040236 30.57005240000288 21.548590524467727 22 21.722627609207144 25.320664452902957 30.14457220155563 22.812135736334266 23 22.531562772073478 25.556738787874426 31.11842661481231 20.793271825239785 24 22.638525874412682 25.5436972492247 28.752174339288672 23.065602537073946 25 22.604910184272445 25.646691676440327 29.68184491901654 22.066553220270688 26 22.340796541204067 26.329123914404335 29.735427654537737 21.594651889853864 27 21.357531983249267 26.431140226221228 29.372366958317443 22.83896083221206 28 21.751566333762653 26.070923934551267 29.603247163240486 22.574262568445594 29 22.091152260413445 25.97711479791911 29.06302391008714 22.868709031580313 30 22.010969283129107 26.060310820339765 30.579541243641124 21.349178652890004 31 22.57330693845833 25.690482015268497 30.485923233006424 21.250287813266752 32 22.17810334654876 25.572962012246453 29.477396315270653 22.771538325934134 33 21.821237381187085 25.713068611085127 30.02170067060491 22.443993337122876 34 21.327896210938345 26.193075932335102 30.427899628720883 22.05112822800567 35 20.92593575288353 27.990559724850517 29.396561261053826 21.686943261212125 36 22.82745954424769 25.71786924643291 29.45401148734701 22.000659721972387 37 21.835200821706877 26.30180413947431 29.41748393642205 22.445511102396765 38 21.747406532641623 25.040698594751724 30.652067938321615 22.559826934285034 39 21.228049741327826 24.921312302578087 31.330655170925105 22.51998278516898 40 20.29609689233625 25.668671166147405 30.904264313313522 23.13096762820282 41 21.487924884335044 24.567515595881392 31.005212568085827 22.93934695169774 42 20.23675789148001 26.49042301354881 30.417455155095375 22.855363939875808 43 20.54897907237784 26.33061919426676 29.648296685110697 23.4721050482447 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 628.0 1 1144.5 2 1661.0 3 4375.5 4 7090.0 5 7090.0 6 11389.0 7 15688.0 8 16906.5 9 18125.0 10 27379.0 11 36633.0 12 36633.0 13 68524.5 14 100416.0 15 154161.5 16 207907.0 17 189819.5 18 171732.0 19 171732.0 20 185687.5 21 199643.0 22 157513.0 23 115383.0 24 128578.5 25 141774.0 26 141774.0 27 154967.5 28 168161.0 29 185260.5 30 202360.0 31 223045.0 32 243730.0 33 243730.0 34 273061.0 35 302392.0 36 334709.5 37 367027.0 38 394215.0 39 421403.0 40 421403.0 41 439434.5 42 457466.0 43 492728.0 44 527990.0 45 561006.5 46 594023.0 47 594023.0 48 757406.5 49 920790.0 50 874750.5 51 828711.0 52 768548.5 53 708386.0 54 708386.0 55 632934.5 56 557483.0 57 481816.5 58 406150.0 59 365372.5 60 324595.0 61 324595.0 62 289840.0 63 255085.0 64 222481.5 65 189878.0 66 162593.5 67 135309.0 68 135309.0 69 116895.0 70 98481.0 71 83381.0 72 68281.0 73 55984.5 74 43688.0 75 43688.0 76 34712.5 77 25737.0 78 20111.0 79 14485.0 80 11257.0 81 8029.0 82 8029.0 83 6046.0 84 4063.0 85 3083.0 86 2103.0 87 1583.5 88 1064.0 89 1064.0 90 860.0 91 656.0 92 462.5 93 269.0 94 196.5 95 124.0 96 124.0 97 81.0 98 38.0 99 28.5 100 19.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 8894656.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.326769276166836 #Duplication Level Percentage of deduplicated Percentage of total 1 72.10558183088158 26.19362834694202 2 13.34889960994933 9.698447924426857 3 5.413629807470396 5.899790428876697 4 2.7095500330586786 3.937167955726114 5 1.589048801502203 2.8862504590369977 6 0.9942075910679394 2.16698098640032 7 0.6861759195504146 1.7448588018658668 8 0.4809761613855411 1.397784803359115 9 0.3472460753705769 1.1352895255837248 >10 1.9616691979628855 13.365801594856059 >50 0.194937493838206 4.947597574292 >100 0.1437179108191228 10.206720397673408 >500 0.015383837288071106 3.877856565655641 >1k 0.00795435371225861 5.6202835663036375 >5k 5.88065051956093E-4 1.5896625865516225 >10k+ 4.3331109091501583E-4 5.331878482450056 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 102000 1.1467559847171156 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 93266 1.0485621928492794 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 71304 0.8016498895516588 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38766 0.435834730426899 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 23463 0.26378760460213413 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 22555 0.2535792277970053 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 21727 0.2442702674504781 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 20724 0.23299383360075981 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 19401 0.2181197339166349 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 16310 0.18336853049741328 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 12824 0.14417645831384598 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 10851 0.12199459990358255 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10796 0.12137625108829392 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10235 0.11506909317234978 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 9952 0.11188740745004641 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 9930 0.11164006792393096 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 9785 0.11000987559271545 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9773 0.10987496312392521 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 9463 0.10638972434684378 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 2.248541146504148E-5 0.0 0.0 2.248541146504148E-5 0.0 6 6.745623439512444E-5 0.0 0.0 2.248541146504148E-5 0.0 7 6.745623439512444E-5 0.0 1.124270573252074E-5 4.497082293008296E-5 0.0 8 1.349124687902489E-4 0.0 1.124270573252074E-5 5.62135286626037E-5 0.0 9 1.4615517452276963E-4 0.0 1.124270573252074E-5 2.810676433130185E-4 0.0 10 2.0236870318537332E-4 0.0 1.124270573252074E-5 4.0473740637074663E-4 0.0 11 2.1361140891789406E-4 0.0 1.124270573252074E-5 7.082904611488066E-4 0.0 12 2.1361140891789406E-4 0.0 1.124270573252074E-5 0.0011804841019146777 0.0 13 2.1361140891789406E-4 0.0 1.124270573252074E-5 0.0012479403363098022 0.0 14 2.698249375804978E-4 0.0 2.248541146504148E-5 0.0014952798624252586 0.0 15 2.810676433130185E-4 0.0 2.248541146504148E-5 0.0018550464458659223 0.0 16 3.0355305477806E-4 0.0 2.248541146504148E-5 0.002608307729944812 0.0 17 3.147957605105807E-4 0.0 2.248541146504148E-5 0.003721335597464365 0.0 18 3.260384662431015E-4 0.0 2.248541146504148E-5 0.004463354175810734 0.0 19 3.260384662431015E-4 0.0 2.248541146504148E-5 0.005452712280272559 0.0 20 3.372811719756222E-4 0.0 2.248541146504148E-5 0.008600669885378366 0.0 21 3.372811719756222E-4 0.0 2.248541146504148E-5 0.015278837090495686 0.0 22 3.372811719756222E-4 0.0 2.248541146504148E-5 0.025161175429381417 0.0 23 3.48523877708143E-4 0.0 3.372811719756222E-5 0.03216538110074184 0.0 24 3.934947006382259E-4 0.0 3.372811719756222E-5 0.04303707754408939 0.0 25 3.934947006382259E-4 0.0 3.372811719756222E-5 0.05022116650717015 0.0 26 3.934947006382259E-4 0.0 3.372811719756222E-5 0.06063191201548435 0.0 27 4.0473740637074663E-4 0.0 3.372811719756222E-5 0.11232587297361472 0.0 28 4.0473740637074663E-4 0.0 3.372811719756222E-5 0.2290701293001101 0.0 29 4.0473740637074663E-4 0.0 3.372811719756222E-5 0.3805768317515596 0.0 30 4.2722281783578813E-4 0.0 3.372811719756222E-5 0.5893201490872721 0.0 31 4.497082293008296E-4 0.0 3.372811719756222E-5 0.888724645450032 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 30885 0.0 22.39647 1 GTATTGG 4445 0.0 17.979752 1 TATACCG 535 0.0 16.252337 5 GTATTAG 2035 0.0 15.545455 1 ATTGGAC 5250 0.0 15.434285 3 ACCGTTA 1385 0.0 15.361011 8 GTATCAA 46290 0.0 14.923094 2 TTAACGG 1280 0.0 14.886719 35 TTGGACC 6410 0.0 14.4883 4 TATTGGA 5740 0.0 14.342335 2 TGGACCC 6375 0.0 14.16157 5 TAATACT 2280 0.0 13.956141 4 TGTTACG 855 0.0 13.631579 16 GACCGTT 1590 0.0 13.613207 7 GGACCCT 6755 0.0 13.447077 6 ATTAGAG 1775 0.0 13.445071 3 AGTTCCG 895 0.0 13.435755 32 TATACTG 935 0.0 13.256684 5 CTAATAC 2210 0.0 13.226244 3 TAGCGAA 1180 0.0 13.012712 10 >>END_MODULE