##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088578_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 597579 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.716092767650803 31.0 31.0 34.0 30.0 34.0 2 31.896375207294767 31.0 31.0 34.0 30.0 34.0 3 31.98587634438292 31.0 31.0 34.0 30.0 34.0 4 35.65814896440471 37.0 35.0 37.0 33.0 37.0 5 35.56711330217427 37.0 35.0 37.0 33.0 37.0 6 35.60281067440456 37.0 35.0 37.0 33.0 37.0 7 35.46079263160185 37.0 35.0 37.0 33.0 37.0 8 35.48406821524853 37.0 35.0 37.0 33.0 37.0 9 37.09631362547881 39.0 37.0 39.0 33.0 39.0 10 36.949072842251816 39.0 37.0 39.0 33.0 39.0 11 37.00358111647163 39.0 37.0 39.0 33.0 39.0 12 36.902248907675805 39.0 37.0 39.0 33.0 39.0 13 36.94687229638257 39.0 37.0 39.0 33.0 39.0 14 37.97821041234715 40.0 37.0 41.0 33.0 41.0 15 37.935467946497454 40.0 37.0 41.0 33.0 41.0 16 37.85172504388541 40.0 37.0 41.0 32.0 41.0 17 37.86702176615979 40.0 37.0 41.0 32.0 41.0 18 37.84814225399487 40.0 37.0 41.0 32.0 41.0 19 37.865000276114124 40.0 37.0 41.0 32.0 41.0 20 37.76548874709453 40.0 37.0 41.0 32.0 41.0 21 37.659079385319764 40.0 37.0 41.0 32.0 41.0 22 37.504919014891755 39.0 36.0 41.0 32.0 41.0 23 37.37065726874606 39.0 36.0 41.0 31.0 41.0 24 37.23472712394512 39.0 36.0 41.0 31.0 41.0 25 37.04784472011232 39.0 36.0 41.0 31.0 41.0 26 37.1936313023048 39.0 36.0 41.0 31.0 41.0 27 37.125861183207576 39.0 36.0 41.0 31.0 41.0 28 36.99515712566874 39.0 36.0 41.0 31.0 41.0 29 36.86241986415185 39.0 35.0 41.0 30.0 41.0 30 36.72784853550744 39.0 35.0 41.0 30.0 41.0 31 36.556209304543835 39.0 35.0 40.0 30.0 41.0 32 36.44409191086032 39.0 35.0 40.0 30.0 41.0 33 36.246790800881556 38.0 35.0 40.0 30.0 41.0 34 36.0955589135495 38.0 35.0 40.0 29.0 41.0 35 35.91568144128224 38.0 35.0 40.0 29.0 41.0 36 35.76870505824335 38.0 35.0 40.0 27.0 41.0 37 35.607753953870535 38.0 35.0 40.0 27.0 41.0 38 35.521956092834586 38.0 35.0 40.0 26.0 41.0 39 35.37508513518715 38.0 34.0 40.0 25.0 41.0 40 35.204711008920995 38.0 34.0 40.0 25.0 41.0 41 35.07577742859103 38.0 34.0 40.0 24.0 41.0 42 34.85365449589092 38.0 34.0 40.0 23.0 41.0 43 34.49656196084534 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 4.0 14 1.0 15 4.0 16 4.0 17 15.0 18 46.0 19 90.0 20 213.0 21 411.0 22 748.0 23 1311.0 24 2136.0 25 3239.0 26 4883.0 27 6875.0 28 9103.0 29 12205.0 30 15420.0 31 19081.0 32 23648.0 33 28935.0 34 36222.0 35 44532.0 36 57945.0 37 83485.0 38 113093.0 39 133930.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.923159950399864 21.05127522888187 13.568582563978989 23.456982256739277 2 18.76270752486282 22.990935089753822 35.11753257728267 23.12882480810069 3 19.75788975181524 24.399117104182043 32.254814844564486 23.588178299438233 4 13.718855582274477 15.937307033881712 36.53291029303239 33.810927090811425 5 13.040451555359208 38.244315814310745 34.89898406737854 13.816248562951507 6 32.53929605960049 37.20846950779729 13.877328353238653 16.374906079363566 7 26.343964563681123 32.535279854211744 21.844141109376334 19.276614472730802 8 27.008981239300578 34.28383527533598 19.237791153972946 19.469392331390495 9 24.721082902846316 14.342706152659312 21.80883197033363 39.127378974160735 10 16.489869958616353 27.125283853682948 33.62350417267005 22.76134201503065 11 33.481932932716845 22.23672518612602 23.388874107021834 20.892467774135305 12 20.90552044164872 26.811183123904957 31.022676499676194 21.26061993477013 13 31.092792752088013 20.729142088326398 26.340115700183574 21.83794945940202 14 20.62488809011026 22.379467819317615 27.570413284268692 29.425230806303432 15 22.974368242525255 29.351265690394072 25.216582242682556 22.457783824398113 16 22.19271426874104 28.02792601480306 26.336936204250822 23.442423512205078 17 21.854683648521785 26.550297115527822 27.165947933243974 24.429071302706422 18 22.858902337598877 25.426261632353214 29.51107719648783 22.20375883356008 19 22.93905910348255 24.828851080777603 30.191321984206272 22.04076783153357 20 23.82262428900614 24.589719518256164 29.809782472275632 21.777873720462065 21 22.768203032569755 25.34493347323116 30.353476276776792 21.533387217422298 22 21.7111043058742 25.841102180632188 29.944827378472134 22.50296613502148 23 22.337967030300597 25.892308799338664 30.82002546943584 20.9496987009249 24 22.47016712434674 26.01011749074181 28.635711763632926 22.884003621278527 25 22.508488417431 25.999742293487554 29.481959707419435 22.009809581662008 26 22.209281115969603 26.63329869356186 29.67323148905835 21.48418870141019 27 21.381273438323635 26.80950970499298 29.164010114143906 22.645206742539482 28 21.697382270795995 26.43299044979827 29.443638414335176 22.425988865070558 29 22.027715164020155 26.417427653916885 28.98796644460398 22.56689073745898 30 21.841630981008368 26.440353493010964 30.410037836001603 21.307977689979065 31 22.359888818047487 26.14148087533196 30.280180528432226 21.218449778188322 32 21.966970057515407 26.01647648260732 29.22458787875745 22.79196558111982 33 21.71562253693654 26.130603652404115 29.893955443548048 22.259818367111293 34 21.338266572285843 26.54895838039824 30.202031865242922 21.910743182073 35 20.90769588623429 28.23308717341138 29.295038814951663 21.564178125402666 36 22.700764250417098 26.292423261192244 29.16718961007666 21.839622878313996 37 21.795611960929016 26.64066173677455 29.2356324435765 22.328093858719935 38 21.668934149292397 25.488680157769934 30.443338872349933 22.39904682058774 39 21.064662580177686 25.51394878334078 31.004770917318048 22.416617719163494 40 20.3941236221487 26.13830137939921 30.642977748548727 22.824597249903363 41 21.445030698869942 24.97460586801076 30.696527153731974 22.883836279387328 42 20.29388582932131 26.764662078152007 30.251230381255027 22.690221711271647 43 20.66555216967129 26.503776069774876 29.471584510165183 23.35908725038865 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 44.0 1 80.5 2 117.0 3 333.0 4 549.0 5 549.0 6 814.0 7 1079.0 8 1178.5 9 1278.0 10 1888.0 11 2498.0 12 2498.0 13 4428.5 14 6359.0 15 9945.0 16 13531.0 17 12462.5 18 11394.0 19 11394.0 20 11969.0 21 12544.0 22 10099.0 23 7654.0 24 8718.0 25 9782.0 26 9782.0 27 10800.5 28 11819.0 29 12961.0 30 14103.0 31 15700.5 32 17298.0 33 17298.0 34 19494.0 35 21690.0 36 23982.0 37 26274.0 38 28186.5 39 30099.0 40 30099.0 41 31176.5 42 32254.0 43 34610.5 44 36967.0 45 38640.5 46 40314.0 47 40314.0 48 49999.0 49 59684.0 50 56621.5 51 53559.0 52 50022.5 53 46486.0 54 46486.0 55 41682.0 56 36878.0 57 32122.5 58 27367.0 59 24443.0 60 21519.0 61 21519.0 62 19056.0 63 16593.0 64 14382.0 65 12171.0 66 10416.0 67 8661.0 68 8661.0 69 7375.0 70 6089.0 71 5225.5 72 4362.0 73 3578.0 74 2794.0 75 2794.0 76 2216.5 77 1639.0 78 1300.5 79 962.0 80 746.0 81 530.0 82 530.0 83 409.5 84 289.0 85 223.5 86 158.0 87 130.5 88 103.0 89 103.0 90 77.5 91 52.0 92 37.5 93 23.0 94 14.5 95 6.0 96 6.0 97 5.5 98 5.0 99 3.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 597579.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.3882941028295 #Duplication Level Percentage of deduplicated Percentage of total 1 85.83248101577553 51.83277107156182 2 7.85670959327886 9.489065791988915 3 2.3326177206521193 4.22588414832636 4 1.069017278072656 2.5822451915703124 5 0.6524601623014946 1.9700478085721265 6 0.4271845890926485 1.5478169161393935 7 0.3038220468036584 1.2843106582112065 8 0.21965971121224662 1.0611900194582193 9 0.16612493957073649 0.9028801537751171 >10 1.0103773528368878 11.371337468554826 >50 0.08034051240548401 3.2962519632917986 >100 0.04336718738779353 4.7544250306751294 >500 0.0033359374913684427 1.2914724678147635 >1k 0.0019459635366315914 2.30242361836468 >5k 5.559895818947404E-4 2.087877691695335 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6869 1.1494714506366523 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 5568 0.9317596501885106 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4788 0.8012329750543442 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2444 0.4089835820870546 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1476 0.2469966314077302 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1363 0.22808699770239582 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1345 0.22507484366083813 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1212 0.2028183721315508 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1087 0.18190063573184465 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 943 0.15780340339938317 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 723 0.12098818733590035 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 699 0.11697198194715677 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 642 0.10743349414889078 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 633 0.10592741712811193 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 628 0.10509070767212368 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 607 0.10157652795697306 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.6734189119764918E-4 0.0 4 0.0 0.0 0.0 1.6734189119764918E-4 0.0 5 0.0 0.0 0.0 1.6734189119764918E-4 0.0 6 0.0 0.0 0.0 1.6734189119764918E-4 0.0 7 0.0 0.0 0.0 1.6734189119764918E-4 0.0 8 0.0 0.0 0.0 1.6734189119764918E-4 0.0 9 0.0 0.0 0.0 1.6734189119764918E-4 0.0 10 1.6734189119764918E-4 0.0 0.0 1.6734189119764918E-4 0.0 11 1.6734189119764918E-4 0.0 0.0 3.3468378239529835E-4 0.0 12 1.6734189119764918E-4 0.0 0.0 3.3468378239529835E-4 1.6734189119764918E-4 13 1.6734189119764918E-4 0.0 0.0 3.3468378239529835E-4 1.6734189119764918E-4 14 3.3468378239529835E-4 0.0 0.0 5.020256735929475E-4 3.3468378239529835E-4 15 3.3468378239529835E-4 0.0 0.0 8.367094559882459E-4 3.3468378239529835E-4 16 3.3468378239529835E-4 0.0 0.0 0.0013387351295811934 3.3468378239529835E-4 17 3.3468378239529835E-4 0.0 0.0 0.0016734189119764918 3.3468378239529835E-4 18 3.3468378239529835E-4 0.0 0.0 0.002175444585569439 3.3468378239529835E-4 19 3.3468378239529835E-4 0.0 0.0 0.003514179715150633 3.3468378239529835E-4 20 3.3468378239529835E-4 0.0 0.0 0.006526333756708318 3.3468378239529835E-4 21 3.3468378239529835E-4 0.0 0.0 0.01255064183982369 3.3468378239529835E-4 22 3.3468378239529835E-4 0.0 0.0 0.02208912963808969 3.3468378239529835E-4 23 3.3468378239529835E-4 0.0 0.0 0.02710938637401917 3.3468378239529835E-4 24 3.3468378239529835E-4 0.0 0.0 0.03514179715150633 3.3468378239529835E-4 25 3.3468378239529835E-4 0.0 0.0 0.041500789017016995 3.3468378239529835E-4 26 3.3468378239529835E-4 0.0 0.0 0.05154130248887595 3.3468378239529835E-4 27 3.3468378239529835E-4 0.0 0.0 0.09638892932984593 3.3468378239529835E-4 28 3.3468378239529835E-4 0.0 0.0 0.19779811539562134 3.3468378239529835E-4 29 3.3468378239529835E-4 0.0 0.0 0.3388673296752396 3.3468378239529835E-4 30 3.3468378239529835E-4 0.0 0.0 0.5219393586454678 3.3468378239529835E-4 31 3.3468378239529835E-4 0.0 0.0 0.7742909305715228 3.3468378239529835E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGTTA 60 4.3155524E-8 27.750002 8 TACTACG 35 8.864392E-4 26.428572 2 AGGGCGT 55 1.9006777E-5 23.545454 6 GGTATCA 1915 0.0 21.639688 1 CTATATC 60 3.722433E-5 21.583334 4 TGTTACG 45 0.0038236908 20.555555 16 GTCTTAT 45 0.0038236908 20.555555 1 ACAGTCC 50 0.0070310254 18.5 8 GTATTGG 300 0.0 18.5 1 CGTTATT 50 0.0070310254 18.5 10 GTGTAGT 60 9.2297414E-4 18.5 1 GACATTC 50 0.0070310254 18.5 7 GTATAGC 70 1.2179545E-4 18.5 9 CGTTTAC 100 2.869183E-7 18.5 28 CCGTTTA 90 2.1486994E-6 18.5 27 CCGTTAT 95 3.6005276E-6 17.526316 9 ATTGGAC 370 0.0 17.5 3 GTATTAA 75 2.0651746E-4 17.266666 1 TACCCTA 140 1.8626451E-9 17.178572 5 TTGGACC 410 0.0 17.146341 4 >>END_MODULE