##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088577_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1596937 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32855522791444 31.0 31.0 33.0 30.0 34.0 2 31.523463355160537 31.0 31.0 34.0 30.0 34.0 3 31.584716867352938 31.0 31.0 34.0 30.0 34.0 4 35.32414741470703 37.0 35.0 37.0 33.0 37.0 5 35.20790613530778 37.0 35.0 37.0 33.0 37.0 6 35.26518829484194 37.0 35.0 37.0 32.0 37.0 7 35.12395730075764 37.0 35.0 37.0 32.0 37.0 8 35.14668268065678 37.0 35.0 37.0 32.0 37.0 9 36.69278437408614 39.0 35.0 39.0 32.0 39.0 10 36.496373369769756 38.0 35.0 39.0 32.0 39.0 11 36.576750366482834 38.0 35.0 39.0 32.0 39.0 12 36.443917950426346 38.0 35.0 39.0 32.0 39.0 13 36.51206090158848 38.0 35.0 39.0 32.0 39.0 14 37.41731201669195 39.0 36.0 41.0 32.0 41.0 15 37.39097847942655 39.0 36.0 41.0 32.0 41.0 16 37.27715808450803 39.0 36.0 40.0 32.0 41.0 17 37.31121828851107 39.0 36.0 40.0 32.0 41.0 18 37.287420856301786 39.0 36.0 40.0 32.0 41.0 19 37.31718283188379 39.0 36.0 40.0 31.0 41.0 20 37.18970692018533 39.0 36.0 40.0 31.0 41.0 21 37.08332889775865 39.0 36.0 40.0 31.0 41.0 22 36.922200437462465 39.0 36.0 40.0 31.0 41.0 23 36.77529983963049 39.0 35.0 40.0 30.0 41.0 24 36.62975934554713 39.0 35.0 40.0 30.0 41.0 25 36.41809852235874 38.0 35.0 40.0 30.0 41.0 26 36.55883857660008 39.0 35.0 40.0 30.0 41.0 27 36.46428757051781 38.0 35.0 40.0 30.0 41.0 28 36.341285222898584 38.0 35.0 40.0 30.0 41.0 29 36.17906028853987 38.0 35.0 40.0 29.0 41.0 30 36.069769815590725 38.0 35.0 40.0 29.0 41.0 31 35.869036787299684 38.0 35.0 40.0 29.0 41.0 32 35.75268717551162 38.0 34.0 40.0 28.0 41.0 33 35.54441471391796 38.0 34.0 40.0 27.0 41.0 34 35.37984403893203 38.0 34.0 40.0 27.0 41.0 35 35.185958494292514 38.0 34.0 40.0 26.0 41.0 36 35.052509898637204 38.0 34.0 40.0 25.0 41.0 37 34.880118000897966 38.0 33.0 40.0 25.0 41.0 38 34.782670825461494 38.0 33.0 40.0 24.0 41.0 39 34.63734198656553 38.0 33.0 40.0 24.0 41.0 40 34.45070782379017 38.0 33.0 40.0 23.0 41.0 41 34.32015978088052 38.0 33.0 40.0 23.0 41.0 42 34.08490441388734 38.0 33.0 40.0 21.0 41.0 43 33.71961636557986 37.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 5.0 14 9.0 15 20.0 16 28.0 17 110.0 18 186.0 19 443.0 20 900.0 21 1707.0 22 3053.0 23 5244.0 24 8301.0 25 12128.0 26 17526.0 27 23501.0 28 31404.0 29 40582.0 30 49901.0 31 60781.0 32 73896.0 33 89337.0 34 108326.0 35 131837.0 36 170607.0 37 232204.0 38 307024.0 39 227873.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.43891524837861 22.437578940183613 14.343333519105638 22.780172292332132 2 19.744548469977214 24.117357165623943 33.867460018773436 22.270634345625407 3 20.66975716637538 24.999608625762946 32.2417853678636 22.08884883999807 4 14.630132560019588 17.002298775718767 35.98551476983751 32.38205389442414 5 12.913283366845404 39.00836413709495 34.539872267972996 13.538480228086645 6 32.471099360838906 37.83849957762892 13.610430467826845 16.079970593705326 7 26.08117915734935 32.87161610007158 21.657836220214072 19.389368522365004 8 27.201073054228186 34.73192743358066 18.970504158899193 19.09649535329196 9 24.728026215185697 14.203315472056818 21.4927076021158 39.575950710641685 10 16.319429006905096 27.699464662663587 33.62956710252189 22.351539227909427 11 33.706777412008115 22.360180771063604 23.339931381137767 20.593110435790514 12 20.792116407848273 27.095182840650573 31.245002150992807 20.867698600508348 13 31.502557708914004 20.80877329537734 26.368353917530875 21.32031507817779 14 20.532619633711285 22.504331730055725 27.788948468223857 29.174100168009133 15 23.012679899081807 29.616071266430673 24.99998434503052 22.371264489457005 16 22.02754397950577 28.116199950279817 26.463097792837164 23.393158277377253 17 21.946451237587958 26.670682688171166 27.28091339858742 24.101952675653454 18 22.929645940948205 25.445462156616074 29.459145852341074 22.16574605009465 19 22.896958364669366 24.900105639734065 30.37352130985756 21.829414685739014 20 23.729176542343247 24.629149427936106 30.07770500652186 21.563969023198787 21 22.85155895317098 25.324605792213468 30.392182033480342 21.43165322113521 22 21.67850077993058 25.72111485925869 30.136943411042516 22.463440949768213 23 22.44578214419229 25.924128503503894 30.798960760505896 20.831128591797924 24 22.48786270216045 25.918367474734445 28.838207142798993 22.75556268030611 25 22.561127959337156 25.934961742385582 29.605238027548992 21.898672270728277 26 22.358552654237457 26.578130508592384 29.62145657593255 21.441860261237608 27 21.436161852346086 26.675379179015827 29.465470460011883 22.4229885086262 28 21.72014299875324 26.40003957576285 29.55376448789151 22.326052937592404 29 21.97049727071262 26.293711023039734 29.15938449669586 22.576407209551785 30 21.920777087637145 26.504051193002603 30.27771289662648 21.29745882273377 31 22.392868347342443 26.193206118963992 30.30714423925302 21.106781294440545 32 22.04144559240596 26.06114079641213 29.358202609119832 22.539211002062075 33 21.814573774669885 26.123698054463013 29.827789073707976 22.233939097159126 34 21.254501586474607 26.62440659838178 30.203383101524985 21.917708713618634 35 20.90439384897463 28.282643585814593 29.429338790446963 21.383623774763812 36 22.692128743964226 26.293084824260443 29.333843476605526 21.6809429551698 37 21.828663247203867 26.82629308482426 29.319065185414328 22.025978482557544 38 21.759029942947027 25.57239264917777 30.438395503391806 22.230181904483395 39 21.219872793979974 25.535572160955628 31.034536741274078 22.210018303790317 40 20.477827240523578 26.23653907449073 30.626505616689954 22.659128068295743 41 21.518319132188683 25.15979027350484 30.71918303602459 22.602707558281885 42 20.500433016455876 26.808008080469047 30.121037962048597 22.57052094102648 43 20.691611503772535 26.63323600116974 29.550946593384708 23.124205901673015 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 131.0 1 210.0 2 289.0 3 559.5 4 830.0 5 830.0 6 1623.5 7 2417.0 8 2779.0 9 3141.0 10 4582.5 11 6024.0 12 6024.0 13 11366.0 14 16708.0 15 27338.0 16 37968.0 17 34272.0 18 30576.0 19 30576.0 20 33225.5 21 35875.0 22 29205.0 23 22535.0 24 25251.0 25 27967.0 26 27967.0 27 30980.5 28 33994.0 29 37770.5 30 41547.0 31 44974.5 32 48402.0 33 48402.0 34 53646.0 35 58890.0 36 64599.0 37 70308.0 38 74841.5 39 79375.0 40 79375.0 41 82574.0 42 85773.0 43 90971.5 44 96170.0 45 101162.5 46 106155.0 47 106155.0 48 131290.5 49 156426.0 50 148583.5 51 140741.0 52 131443.5 53 122146.0 54 122146.0 55 109440.0 56 96734.0 57 84579.5 58 72425.0 59 65099.5 60 57774.0 61 57774.0 62 51141.0 63 44508.0 64 38561.5 65 32615.0 66 27786.0 67 22957.0 68 22957.0 69 19834.0 70 16711.0 71 14013.0 72 11315.0 73 9411.5 74 7508.0 75 7508.0 76 5947.5 77 4387.0 78 3501.5 79 2616.0 80 2020.0 81 1424.0 82 1424.0 83 1067.0 84 710.0 85 567.0 86 424.0 87 310.5 88 197.0 89 197.0 90 173.5 91 150.0 92 98.5 93 47.0 94 41.5 95 36.0 96 36.0 97 22.5 98 9.0 99 5.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1596937.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.17171007948788 #Duplication Level Percentage of deduplicated Percentage of total 1 82.45306299744118 45.49076486860575 2 10.135334217932595 11.183674420609805 3 2.9719844653481235 4.919083958487853 4 1.2843082812816233 2.8342993659022038 5 0.7116369471554375 1.9631113665155815 6 0.4513389976483609 1.4940686595493216 7 0.3176329058858121 1.22670454166661 8 0.2319281127872025 1.0236696478382643 9 0.16927010933162062 0.8405029257450649 >10 1.1070638130450274 11.643032106937977 >50 0.10177447285017992 3.924737090691324 >100 0.05761875559198352 5.798822845751879 >500 0.003977537573054152 1.5000807512067753 >1k 0.0026138104051498714 2.776011505106791 >5k 1.1364393065869006E-4 0.4227186802355728 >10k+ 3.4093179197607017E-4 2.9587172651492795 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19530 1.2229662159496586 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15509 0.9711716867979137 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12150 0.7608315168350411 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6742 0.4221832169960368 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3862 0.24183796856106407 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3753 0.2350124018668238 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3586 0.22455488225271253 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3586 0.22455488225271253 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3008 0.1883605928098604 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2516 0.15755161286888586 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2017 0.1263042937824097 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1925 0.12054326501295919 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 6.261987792880996E-5 0.0 0.0 0.0 0.0 4 6.261987792880996E-5 0.0 0.0 0.0 0.0 5 6.261987792880996E-5 0.0 0.0 0.0 0.0 6 6.261987792880996E-5 0.0 0.0 0.0 0.0 7 6.261987792880996E-5 0.0 0.0 0.0 0.0 8 6.261987792880996E-5 0.0 0.0 0.0 0.0 9 1.2523975585761993E-4 0.0 0.0 1.878596337864299E-4 0.0 10 1.2523975585761993E-4 0.0 0.0 2.5047951171523985E-4 0.0 11 1.2523975585761993E-4 0.0 0.0 4.3833914550166973E-4 0.0 12 1.2523975585761993E-4 0.0 0.0 6.261987792880997E-4 0.0 13 1.2523975585761993E-4 0.0 0.0 6.888186572169096E-4 0.0 14 1.2523975585761993E-4 0.0 0.0 7.514385351457196E-4 0.0 15 1.2523975585761993E-4 0.0 0.0 0.0010019180468609594 0.0 16 1.2523975585761993E-4 0.0 0.0 0.0013776373144338192 0.0 17 1.2523975585761993E-4 0.0 0.0 0.002003836093721919 0.0 18 1.2523975585761993E-4 0.0 0.0 0.0023795553612947786 0.0 19 1.2523975585761993E-4 0.0 0.0 0.003256233652298118 0.0 20 1.2523975585761993E-4 0.0 6.261987792880996E-5 0.0058862685253081365 0.0 21 1.2523975585761993E-4 0.0 6.261987792880996E-5 0.010457519614111264 0.0 22 1.878596337864299E-4 0.0 6.261987792880996E-5 0.0182223844772837 0.0 23 1.878596337864299E-4 0.0 6.261987792880996E-5 0.02216743678679873 0.0 24 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.030746360063045694 0.0 25 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.0364447689545674 0.0 26 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.044084394061882214 0.0 27 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.08297133825567321 0.0 28 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.174646839543451 0.0 29 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.29725656052806093 0.0 30 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.46157112021325825 0.0 31 2.5047951171523985E-4 0.0 6.261987792880996E-5 0.6916365517237061 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACCGG 40 0.0019315147 23.125 31 GGTATCA 4910 0.0 21.514257 1 TTTACCG 50 0.007036052 18.5 30 ACCGTTA 230 0.0 18.499998 8 TATACCG 115 6.409573E-8 17.69565 5 ATACGTT 75 2.067902E-4 17.266666 6 GTATTGG 705 0.0 16.794327 1 GACCGTT 250 0.0 16.279999 7 TTAACGG 115 1.2428609E-6 16.086956 35 TATCGTT 105 9.347574E-6 15.857144 13 CCGTTAT 285 0.0 15.578948 9 TTAGGGT 155 7.214112E-9 15.516129 4 TTATGCG 155 7.214112E-9 15.516129 4 AAGACCG 120 1.9365507E-6 15.416666 5 CCGTTTA 265 0.0 15.358491 27 TCCTACA 230 0.0 15.282607 2 CGTATAC 85 5.365774E-4 15.235294 3 GTTATCG 110 1.4524927E-5 15.136364 11 GGCTAGC 100 1.09378714E-4 14.8 1 CGCCGTT 305 0.0 14.557377 25 >>END_MODULE