##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088576_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2749988 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32739415590177 31.0 31.0 33.0 30.0 34.0 2 31.52853466996947 31.0 31.0 34.0 30.0 34.0 3 31.596557148613012 31.0 31.0 34.0 30.0 34.0 4 35.34710078734889 37.0 35.0 37.0 33.0 37.0 5 35.206861266303704 37.0 35.0 37.0 33.0 37.0 6 35.25661166521454 37.0 35.0 37.0 32.0 37.0 7 35.131108208472185 37.0 35.0 37.0 32.0 37.0 8 35.14008352036445 37.0 35.0 37.0 32.0 37.0 9 36.70120342343312 39.0 35.0 39.0 32.0 39.0 10 36.489555227150085 38.0 35.0 39.0 32.0 39.0 11 36.572973409338516 38.0 35.0 39.0 32.0 39.0 12 36.44362339035661 38.0 35.0 39.0 32.0 39.0 13 36.51050913676714 38.0 35.0 39.0 32.0 39.0 14 37.45930382241668 39.0 36.0 41.0 32.0 41.0 15 37.4185985538846 39.0 36.0 41.0 32.0 41.0 16 37.306035517245896 39.0 36.0 40.0 32.0 41.0 17 37.31191263380058 39.0 36.0 40.0 32.0 41.0 18 37.2719350048073 39.0 36.0 40.0 32.0 41.0 19 37.293121279074676 39.0 36.0 40.0 31.0 41.0 20 37.152531211045286 39.0 36.0 40.0 31.0 41.0 21 37.04283255054204 39.0 36.0 40.0 31.0 41.0 22 36.8826762153144 39.0 36.0 40.0 30.0 41.0 23 36.74668580371987 39.0 35.0 40.0 30.0 41.0 24 36.597756062935545 38.0 35.0 40.0 30.0 41.0 25 36.398574102868814 38.0 35.0 40.0 30.0 41.0 26 36.55168931646247 39.0 35.0 40.0 30.0 41.0 27 36.4575463602023 39.0 35.0 40.0 30.0 41.0 28 36.34029748493448 38.0 35.0 40.0 30.0 41.0 29 36.17990842141857 38.0 35.0 40.0 29.0 41.0 30 36.087974929345144 38.0 35.0 40.0 29.0 41.0 31 35.9222312970093 38.0 35.0 40.0 29.0 41.0 32 35.80637151871208 38.0 34.0 40.0 28.0 41.0 33 35.617364875774 38.0 34.0 40.0 27.0 41.0 34 35.48159301058768 38.0 34.0 40.0 27.0 41.0 35 35.302255864389224 38.0 34.0 40.0 26.0 41.0 36 35.1772560462082 38.0 34.0 40.0 26.0 41.0 37 35.02027754302928 38.0 33.0 40.0 25.0 41.0 38 34.95290088538568 38.0 33.0 40.0 25.0 41.0 39 34.823363592859316 38.0 33.0 40.0 24.0 41.0 40 34.663930169877105 38.0 33.0 40.0 24.0 41.0 41 34.553874416906545 38.0 33.0 40.0 23.0 41.0 42 34.35425063673005 38.0 33.0 40.0 23.0 41.0 43 33.9920796018019 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 4.0 13 10.0 14 13.0 15 27.0 16 75.0 17 162.0 18 349.0 19 780.0 20 1545.0 21 2991.0 22 5466.0 23 8652.0 24 13979.0 25 20406.0 26 29041.0 27 39513.0 28 52814.0 29 67679.0 30 84940.0 31 103641.0 32 126025.0 33 151706.0 34 184969.0 35 227243.0 36 291533.0 37 396260.0 38 542393.0 39 397768.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.393630808570805 22.159369422702934 13.928751689098279 23.518248079627984 2 20.024160105425914 23.671557839525118 33.26447242678877 23.039809628260198 3 20.76587243289789 24.83210835829102 31.590392394439537 22.811626814371554 4 15.135956956903085 17.026983390472978 35.512118598335704 32.32494105428824 5 13.403585761101503 38.37864019770268 34.53582342904769 13.681950612148125 6 33.10818083569819 37.45034523787013 13.839987665400722 15.601486261030958 7 26.8456807811525 32.28283177962958 21.63223984977389 19.239247589444027 8 27.28630088567659 34.611714669300376 18.960191826291606 19.141792618731426 9 25.213637295871838 14.094243320334488 20.807763524786292 39.884355859007385 10 16.3704350709894 27.461828924344395 33.695056123881265 22.472679880784934 11 34.61236921761113 22.11704196527403 22.80017221893332 20.470416598181522 12 20.86430922607662 26.532770324815964 30.880462023834287 21.72245842527313 13 31.358245926891314 20.5606715374758 25.782367050328947 22.298715485303937 14 20.966746036709978 21.985914120352525 27.07989998501812 29.96743985791938 15 23.83959493641427 29.16878182741161 24.075777785212154 22.915845450961967 16 22.89169989105407 27.676993499608 25.74651234841752 23.684794260920413 17 22.474970799872583 26.546988568677392 26.742007601487717 24.23603302996231 18 23.203628524924472 25.445965582395267 28.47674244396703 22.87366344871323 19 23.417047638026055 24.98265446976496 29.19729104272455 22.403006849484434 20 24.06814138825333 24.833490182502615 28.93921718931137 22.159151239932683 21 23.468102406265047 25.216255489114864 29.053254050563133 22.262388054056963 22 22.55991662509073 25.626402733393743 28.869653249396 22.94402739211953 23 23.003482197013223 25.67138474786072 29.392673713485294 21.932459341640765 24 23.122937263726243 25.75811239903592 27.82470323506866 23.294247102169173 25 23.261119684885898 25.70847581880357 28.442924114577956 22.587480381732576 26 23.028755034567425 26.144368629972202 28.513433513164422 22.31344282229595 27 22.4525707021267 26.244405430132783 28.296305292968547 23.006718574771963 28 22.60235317390476 26.147495916345814 28.39845119324157 22.851699716507852 29 22.7579174890945 26.139714064206824 28.130959116912514 22.971409329786166 30 22.65882614760501 26.199423415665812 29.07609051384952 22.065659922879664 31 23.064137007143305 25.890403885398772 29.02099936436086 22.02445974309706 32 22.697444497939628 25.833749092723313 28.302305319150484 23.166501090186575 33 22.58824402142846 25.915458540182723 28.75245273797558 22.743844700413238 34 22.265406249045448 26.11862306308246 28.999908363236493 22.6160623246356 35 21.97609589569118 27.424737853401542 28.49557888979879 22.103587361108485 36 23.328210886738415 25.913822169405833 28.358378291105268 22.399588652750484 37 22.643116988146858 26.238187221180603 28.33656001408006 22.78213577659248 38 22.53017104074636 25.35214699118687 29.29783693601572 22.81984503205105 39 22.137078416342177 25.228146450093604 29.815984651569387 22.81879048199483 40 21.586712378381286 25.775494293066004 29.503583288363437 23.134210040189267 41 22.275806294427465 24.840581122535806 29.67394766813528 23.209664914901445 42 21.469620958346 26.198405229404635 29.225509347677153 23.10646446457221 43 21.58998511993507 25.913894896995913 28.843180406605413 23.652939576463606 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 156.0 1 271.0 2 386.0 3 811.5 4 1237.0 5 1237.0 6 2253.0 7 3269.0 8 3649.0 9 4029.0 10 6071.0 11 8113.0 12 8113.0 13 15384.0 14 22655.0 15 36449.0 16 50243.0 17 45844.0 18 41445.0 19 41445.0 20 45717.0 21 49989.0 22 41757.0 23 33525.0 24 38902.0 25 44279.0 26 44279.0 27 49366.5 28 54454.0 29 60784.0 30 67114.0 31 74258.5 32 81403.0 33 81403.0 34 90790.0 35 100177.0 36 110361.5 37 120546.0 38 130047.0 39 139548.0 40 139548.0 41 145438.5 42 151329.0 43 159960.5 44 168592.0 45 177016.5 46 185441.0 47 185441.0 48 218375.5 49 251310.0 50 243180.5 51 235051.0 52 223475.5 53 211900.0 54 211900.0 55 193098.0 56 174296.0 57 157264.5 58 140233.0 59 126763.0 60 113293.0 61 113293.0 62 101401.0 63 89509.0 64 77765.5 65 66022.0 66 56672.5 67 47323.0 68 47323.0 69 40633.5 70 33944.0 71 28700.5 72 23457.0 73 19268.0 74 15079.0 75 15079.0 76 12076.5 77 9074.0 78 7089.5 79 5105.0 80 3988.5 81 2872.0 82 2872.0 83 2250.5 84 1629.0 85 1263.0 86 897.0 87 677.0 88 457.0 89 457.0 90 428.5 91 400.0 92 265.5 93 131.0 94 91.5 95 52.0 96 52.0 97 34.0 98 16.0 99 12.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2749988.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.080786207542175 #Duplication Level Percentage of deduplicated Percentage of total 1 79.90068293474602 41.6129038576112 2 11.234732411963432 11.702273936928242 3 3.6259971912810185 5.665343535247653 4 1.5459676680826064 3.2206084642073094 5 0.8675652225802892 2.259173943915139 6 0.49968027447883595 1.5614244928354943 7 0.35911221489177114 1.3091992541806692 8 0.26189784528402027 1.0911876550762412 9 0.1956036905653891 0.9168474590768037 >10 1.308625258475174 12.97366563927597 >50 0.12275299102769888 4.45709034511302 >100 0.07044869364921855 6.607679399916308 >500 0.004552365589455215 1.6632465279612219 >1k 0.0021010918105107915 2.334651138586883 >5k 7.003639368369304E-5 0.32889962373274256 >10k+ 2.1010918105107912E-4 2.295804726334984 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 25557 0.9293495098887704 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21237 0.7722579153072667 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16147 0.5871661985434118 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9017 0.3278923398938468 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4938 0.17956441991746872 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4683 0.17029165218175496 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4660 0.16945528489578865 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4201 0.15276430297150387 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3844 0.13978242814150463 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3075 0.1118186697541953 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 7.272759008402946E-5 0.0 0.0 0.0 0.0 7 7.272759008402946E-5 0.0 0.0 0.0 0.0 8 1.0909138512604419E-4 0.0 0.0 0.0 0.0 9 1.0909138512604419E-4 0.0 0.0 3.636379504201473E-5 0.0 10 1.0909138512604419E-4 0.0 0.0 3.636379504201473E-5 0.0 11 1.0909138512604419E-4 0.0 0.0 1.0909138512604419E-4 0.0 12 1.0909138512604419E-4 0.0 0.0 1.0909138512604419E-4 0.0 13 1.0909138512604419E-4 0.0 0.0 1.0909138512604419E-4 0.0 14 1.0909138512604419E-4 0.0 0.0 1.4545518016805892E-4 0.0 15 1.0909138512604419E-4 0.0 0.0 2.9091036033611784E-4 0.0 16 1.0909138512604419E-4 0.0 0.0 6.181845157142504E-4 0.0 17 1.0909138512604419E-4 0.0 0.0 9.45458671092383E-4 0.0 18 1.4545518016805892E-4 0.0 0.0 0.0013090966215125303 0.0 19 1.4545518016805892E-4 0.0 0.0 0.0017818259570587217 0.0 20 1.4545518016805892E-4 0.0 0.0 0.0024727380628570017 0.0 21 1.4545518016805892E-4 0.0 0.0 0.0040000174546216205 0.0 22 1.4545518016805892E-4 0.0 0.0 0.0070909400331928725 0.0 23 1.4545518016805892E-4 0.0 0.0 0.008581855629915477 0.0 24 1.4545518016805892E-4 0.0 0.0 0.011672778208486728 0.0 25 1.4545518016805892E-4 0.0 0.0 0.01461824560688992 0.0 26 1.4545518016805892E-4 0.0 0.0 0.018981901011931687 0.0 27 1.4545518016805892E-4 0.0 0.0 0.049309306076971975 0.0 28 1.4545518016805892E-4 0.0 0.0 0.11738233039562354 0.0 29 1.4545518016805892E-4 0.0 0.0 0.20396452639066062 0.0 30 1.8181897521007365E-4 0.0 0.0 0.32007412395981366 0.0 31 2.1818277025208838E-4 0.0 0.0 0.4926930590242576 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATACG 40 0.0019318674 23.125 27 GGTATCA 6690 0.0 22.37145 1 CGTAGAC 115 1.2436576E-6 16.086956 3 GTATCAA 10015 0.0 14.962556 2 AGTGCGC 285 0.0 13.631578 8 ACAGTCC 320 0.0 13.296875 8 GTATTGG 980 0.0 13.214287 1 TAATACT 675 0.0 13.155555 4 TAGTACT 495 0.0 13.080809 4 TAGACTG 270 3.6379788E-12 13.018518 5 CGAACTA 330 0.0 12.893939 24 ATAGTAC 420 0.0 12.773809 3 TTAACGG 220 4.090907E-9 12.613636 35 ACGTTTA 135 9.9698074E-5 12.333334 26 TAAACGT 150 1.9457493E-5 12.333333 4 GTTATCG 165 3.8083908E-6 12.333333 11 AACGCAG 15435 0.0 12.165533 5 CTAATAC 670 0.0 12.149254 3 GTACTAC 290 1.2732926E-11 12.120689 1 CTTATAG 260 3.092282E-10 12.096154 3 >>END_MODULE