##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088574_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 976903 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.87405504947779 31.0 31.0 31.0 28.0 34.0 2 31.048427530676022 31.0 31.0 34.0 28.0 34.0 3 31.02867224279176 31.0 31.0 34.0 27.0 34.0 4 34.78869857089189 35.0 35.0 37.0 32.0 37.0 5 34.61661495563019 35.0 35.0 37.0 32.0 37.0 6 34.80808125269346 35.0 35.0 37.0 32.0 37.0 7 34.67241578744256 35.0 35.0 37.0 31.0 37.0 8 34.75923709928212 35.0 35.0 37.0 32.0 37.0 9 36.21563348664095 38.0 35.0 39.0 32.0 39.0 10 35.95836331754534 37.0 35.0 39.0 30.0 39.0 11 36.10441261824357 38.0 35.0 39.0 31.0 39.0 12 35.91787823356055 37.0 35.0 39.0 30.0 39.0 13 36.07140319970355 37.0 35.0 39.0 31.0 39.0 14 36.81115627651875 38.0 36.0 40.0 31.0 41.0 15 36.82731755353397 38.0 36.0 40.0 31.0 41.0 16 36.655378271947164 38.0 36.0 40.0 31.0 41.0 17 36.740135919328736 38.0 36.0 40.0 31.0 41.0 18 36.734600057528745 38.0 36.0 40.0 31.0 41.0 19 36.783001997127656 39.0 36.0 40.0 31.0 41.0 20 36.66032553897367 38.0 35.0 40.0 30.0 41.0 21 36.539073991993064 38.0 35.0 40.0 30.0 41.0 22 36.369713267335655 38.0 35.0 40.0 30.0 41.0 23 36.20136902026097 38.0 34.0 40.0 29.0 41.0 24 36.058442854613 38.0 34.0 40.0 29.0 41.0 25 35.833234210561336 38.0 34.0 40.0 27.0 41.0 26 35.89719757232806 38.0 34.0 40.0 29.0 41.0 27 35.771511603506184 38.0 34.0 40.0 28.0 41.0 28 35.61482358023263 38.0 34.0 40.0 27.0 41.0 29 35.424403446401534 38.0 34.0 40.0 27.0 41.0 30 35.28915255659979 38.0 34.0 40.0 27.0 41.0 31 35.02655841982264 37.0 33.0 40.0 26.0 41.0 32 34.87596312018696 37.0 33.0 40.0 25.0 41.0 33 34.63131139939175 37.0 33.0 40.0 25.0 41.0 34 34.435610290888654 37.0 33.0 40.0 25.0 41.0 35 34.188260246923186 37.0 33.0 40.0 24.0 41.0 36 34.01369634446818 37.0 33.0 40.0 23.0 41.0 37 33.81407161202289 37.0 33.0 40.0 22.0 41.0 38 33.667431669265014 37.0 32.0 40.0 21.0 41.0 39 33.43185863898463 37.0 32.0 40.0 20.0 41.0 40 33.202591250103644 37.0 31.0 40.0 18.0 41.0 41 33.00660659246619 36.0 31.0 40.0 18.0 41.0 42 32.72954428433529 36.0 31.0 39.0 15.0 41.0 43 32.3181277977445 36.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 4.0 14 6.0 15 24.0 16 44.0 17 95.0 18 233.0 19 439.0 20 892.0 21 1654.0 22 2833.0 23 4563.0 24 6948.0 25 10049.0 26 14130.0 27 18611.0 28 24339.0 29 30699.0 30 37712.0 31 44890.0 32 53068.0 33 63807.0 34 76480.0 35 93893.0 36 120541.0 37 151163.0 38 153679.0 39 66106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.739363068800074 25.38614376248205 16.154828063789342 19.719665104928534 2 22.061351024615544 25.951092380717434 31.67325722205787 20.314299372609153 3 23.651171098870616 25.24692830301473 31.961822207527256 19.140078390587398 4 17.48996573866597 18.874647738823608 33.249053386057774 30.38633313645265 5 12.260992135350184 40.92852616892363 33.73651222281025 13.07396947291594 6 31.816669618170895 38.022505816851826 13.12986038531973 17.030964179657552 7 24.24949048165478 34.23594768364925 21.90053669606911 19.614025138626864 8 27.367814409414244 35.57159718006803 18.802378537070723 18.258209873447008 9 23.914452100157334 14.3905792079664 22.5477862182837 39.147182473592565 10 16.823164633540895 28.829781462437932 32.9900716857252 21.356982218295983 11 33.00962326863568 22.530281921541853 23.582484647912842 20.877610161909626 12 19.718539097535785 28.39647334484591 31.927427799894154 19.957559757724155 13 32.33186918250839 20.673598095204948 27.314892061954975 19.679640660331682 14 19.518416874551516 23.24928882396717 29.402714496730997 27.82957980475032 15 22.72047480660823 29.941867309241555 26.476426011589687 20.86123187256053 16 20.60839203073386 28.28182531940223 28.484813743022592 22.624968906841314 17 21.292492703983918 26.882095765905113 28.792213761243442 23.033197768867534 18 22.21581876603921 25.0466013514136 30.983424147535633 21.75415573501156 19 22.232504148313602 24.428320928485224 32.73098762108418 20.608187302116995 20 22.836863025295244 24.210899137375975 32.624016918772895 20.328220918555886 21 22.000034803864867 24.936252626924066 33.26891206189356 19.79480050731751 22 20.44737297357056 25.307323244989522 32.867746337149136 21.377557444290783 23 21.362714619568166 25.66959053252984 33.72699234212609 19.240702505775907 24 21.288295767338212 25.64799166345072 31.380802392868073 21.682910176342997 25 21.528954256461493 25.986203338509554 31.814110510460097 20.670731894568856 26 21.278571158037185 26.552892149988278 32.119565606820736 20.048971085153795 27 20.46242052691004 26.35880942120149 31.988232199102672 21.19053785278579 28 20.608084937808567 26.629870109929033 32.07534422557818 20.686700726684226 29 20.81025444696147 25.66846452513709 31.60805115758678 21.91322987031466 30 20.934422353089303 26.194719434785235 32.89139249239689 19.97946571972857 31 21.434574364087325 25.982415859097575 32.62749730525958 19.95551247155552 32 21.103118733384992 25.822625173635462 31.852804219047336 21.221451873932214 33 20.852530906343823 25.975147993198917 32.14300703345163 21.02931406700563 34 20.334362777061795 26.57080590396385 32.457879646188005 20.636951672786346 35 19.796028879018696 28.180177561129405 31.67991090210594 20.343882657745958 36 22.07865059274053 25.95283257396077 31.399432697002673 20.569084136296027 37 21.153072515899737 26.695178538708554 31.151608706289164 21.000140239102553 38 21.140174613037324 25.05253848130265 32.42645380349943 21.380833102160604 39 20.196170960678796 25.199635992519216 33.21711572182704 21.387077324974946 40 19.496203819621805 26.10801686554346 32.26594656787828 22.129832746956453 41 20.744638925256652 25.164729763343956 32.30115988997884 21.78947142142055 42 19.876794318371424 27.016397738567697 31.21517694182534 21.891631001235538 43 20.127996331263187 27.00994878713649 30.585329352044166 22.276725529556156 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 72.0 1 113.5 2 155.0 3 341.5 4 528.0 5 528.0 6 1094.5 7 1661.0 8 2007.0 9 2353.0 10 3593.0 11 4833.0 12 4833.0 13 9735.5 14 14638.0 15 23580.5 16 32523.0 17 28668.0 18 24813.0 19 24813.0 20 27900.5 21 30988.0 22 24286.5 23 17585.0 24 18501.0 25 19417.0 26 19417.0 27 20591.0 28 21765.0 29 23582.5 30 25400.0 31 27375.5 32 29351.0 33 29351.0 34 32079.0 35 34807.0 36 38034.5 37 41262.0 38 43610.5 39 45959.0 40 45959.0 41 48063.5 42 50168.0 43 53436.0 44 56704.0 45 61511.0 46 66318.0 47 66318.0 48 85934.5 49 105551.0 50 97189.0 51 88827.0 52 81168.5 53 73510.0 54 73510.0 55 63804.0 56 54098.0 57 45879.0 58 37660.0 59 33104.0 60 28548.0 61 28548.0 62 24850.5 63 21153.0 64 18320.0 65 15487.0 66 13103.5 67 10720.0 68 10720.0 69 9134.0 70 7548.0 71 6249.5 72 4951.0 73 4109.5 74 3268.0 75 3268.0 76 2620.0 77 1972.0 78 1503.0 79 1034.0 80 808.0 81 582.0 82 582.0 83 460.5 84 339.0 85 248.0 86 157.0 87 129.5 88 102.0 89 102.0 90 79.0 91 56.0 92 42.5 93 29.0 94 18.5 95 8.0 96 8.0 97 5.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 976903.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.60573690736486 #Duplication Level Percentage of deduplicated Percentage of total 1 85.39854552821889 47.486490549137585 2 8.223944364437251 9.145969733394072 3 2.337401910913816 3.8991886711513666 4 1.0949156224039374 2.435343601406279 5 0.5941437555119755 1.6518900677076307 6 0.40171682152522314 1.340265593339664 7 0.2712289012714172 1.0557318048040443 8 0.2133437560832098 0.9490509417273588 9 0.16788672510105107 0.8401918559587319 >10 1.126623991590012 11.994691963398736 >50 0.10882905981097726 4.192003752556047 >100 0.05238184972276903 5.263428606705145 >500 0.005533293924153454 2.1611645925114447 >1k 0.002766646962076727 2.876937546722595 >5k 3.688862616102303E-4 1.5292865052647184 >10k+ 3.688862616102303E-4 3.178364214214582 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 16339 1.6725304354680046 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14651 1.499739482835041 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8816 0.9024437431351935 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6095 0.6239104598921285 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3361 0.34404644063944934 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3220 0.32961307315055843 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3042 0.3113922262496891 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2565 0.26256445112769644 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2524 0.2583675144819905 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2042 0.2090279178178386 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1835 0.18783850597244559 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1529 0.15651502759229935 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1368 0.14003437393477142 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1227 0.1256010064458805 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1136 0.11628585437858212 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1127 0.11536457560269546 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1071 0.10963217433051184 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 1003 0.10267140135714602 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1001 0.10246667274028229 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 985 0.1008288438053727 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 981 0.1004193865716453 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 3.0709292529555135E-4 0.0 10 2.047286168637009E-4 0.0 0.0 5.118215421592523E-4 0.0 11 2.047286168637009E-4 0.0 0.0 7.165501590229532E-4 0.0 12 2.047286168637009E-4 0.0 0.0 0.0010236430843185045 0.0 13 2.047286168637009E-4 0.0 0.0 0.0010236430843185045 0.0 14 3.0709292529555135E-4 0.0 0.0 0.0010236430843185045 0.0 15 3.0709292529555135E-4 0.0 0.0 0.0015354646264777567 0.0 16 3.0709292529555135E-4 0.0 0.0 0.002456743402364411 0.0 17 3.0709292529555135E-4 0.0 0.0 0.003787479411978467 0.0 18 3.0709292529555135E-4 0.0 0.0 0.004196936645705868 0.0 19 3.0709292529555135E-4 0.0 0.0 0.005425308346888074 0.0 20 3.0709292529555135E-4 0.0 0.0 0.010748252385344298 0.0 21 3.0709292529555135E-4 0.0 0.0 0.019039761368324182 0.0 22 3.0709292529555135E-4 0.0 0.0 0.032551850081328444 0.0 23 3.0709292529555135E-4 0.0 0.0 0.042788280924513485 0.0 24 3.0709292529555135E-4 0.0 0.0 0.0566074625628133 0.0 25 3.0709292529555135E-4 0.0 0.0 0.06745807925658945 0.0 26 3.0709292529555135E-4 0.0 0.0 0.0791276104178204 0.0 27 3.0709292529555135E-4 0.0 0.0 0.1249868205952894 0.0 28 3.0709292529555135E-4 0.0 0.0 0.23083151551382278 0.0 29 3.0709292529555135E-4 0.0 0.0 0.3652358524848424 0.0 30 3.0709292529555135E-4 0.0 0.0 0.5598304028137902 0.0 31 3.0709292529555135E-4 0.0 0.0 0.8290485339895568 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4655 0.0 23.328678 1 AGCGTAA 40 0.0019309811 23.125 27 TAGACCA 50 0.0070341444 18.5 4 GTTAGGC 50 0.0070341444 18.5 11 CGTAGAC 50 0.0070341444 18.5 3 GTATCAA 6210 0.0 17.516909 2 CGTTTAT 85 2.7224381E-5 17.411764 1 ATTAGAC 65 0.0015797049 17.076923 3 ATGCCGT 65 0.0015797049 17.076923 6 GCATATA 65 0.0015797049 17.076923 1 TTCGTCT 80 3.381916E-4 16.1875 18 GTATTGG 360 0.0 15.930556 1 ACTGTCG 70 0.00259212 15.857142 8 GCCGTCA 105 9.34015E-6 15.857142 13 CTAATTG 70 0.00259212 15.857142 14 ATTAATC 155 7.201379E-9 15.516129 3 ACTGAGC 120 1.9346771E-6 15.416667 8 CGAACTA 170 1.4842954E-9 15.235294 24 ATTTTCG 85 5.363127E-4 15.235294 15 GGGCGTC 85 5.363127E-4 15.235294 7 >>END_MODULE