##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088573_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1039921 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.65086674853186 31.0 30.0 31.0 28.0 34.0 2 30.81323773632805 31.0 31.0 33.0 27.0 34.0 3 30.69778185073674 31.0 30.0 34.0 27.0 34.0 4 34.47020302503748 35.0 35.0 37.0 30.0 37.0 5 34.20920050657694 35.0 35.0 37.0 30.0 37.0 6 34.520465496898325 35.0 35.0 37.0 31.0 37.0 7 34.39703977513677 35.0 35.0 37.0 30.0 37.0 8 34.50675676325413 35.0 35.0 37.0 30.0 37.0 9 35.928661888739626 37.0 35.0 39.0 30.0 39.0 10 35.59688572497334 37.0 35.0 39.0 30.0 39.0 11 35.81507345269497 37.0 35.0 39.0 30.0 39.0 12 35.57443690434177 37.0 35.0 39.0 30.0 39.0 13 35.772124997956574 37.0 35.0 39.0 30.0 39.0 14 36.40474516814258 38.0 35.0 40.0 30.0 41.0 15 36.45237186286266 38.0 35.0 40.0 30.0 41.0 16 36.240079775290624 38.0 35.0 40.0 30.0 41.0 17 36.3533278008618 38.0 35.0 40.0 30.0 41.0 18 36.35768293937713 38.0 35.0 40.0 30.0 41.0 19 36.42594100898049 38.0 35.0 40.0 30.0 41.0 20 36.29666676603319 38.0 35.0 40.0 30.0 41.0 21 36.18564871754681 38.0 34.0 40.0 29.0 41.0 22 35.99863547327153 38.0 34.0 40.0 29.0 41.0 23 35.81023750842612 38.0 34.0 40.0 27.0 41.0 24 35.66990761798252 38.0 34.0 40.0 27.0 41.0 25 35.44691567917178 38.0 34.0 40.0 27.0 41.0 26 35.46480357642552 38.0 34.0 40.0 27.0 41.0 27 35.32300434359918 38.0 34.0 40.0 27.0 41.0 28 35.15713308991741 38.0 33.0 40.0 27.0 41.0 29 34.95436480271098 37.0 33.0 40.0 26.0 41.0 30 34.813884900872274 37.0 33.0 40.0 25.0 41.0 31 34.53488678466922 37.0 33.0 39.0 25.0 41.0 32 34.37812680001654 37.0 33.0 39.0 25.0 40.0 33 34.1011288357481 36.0 33.0 39.0 24.0 40.0 34 33.90883057463019 36.0 33.0 39.0 24.0 40.0 35 33.65079751250335 36.0 32.0 39.0 23.0 40.0 36 33.49786570326015 36.0 32.0 39.0 22.0 40.0 37 33.27223510247413 36.0 31.0 39.0 21.0 40.0 38 33.101725034882456 36.0 31.0 39.0 20.0 40.0 39 32.82655605570039 36.0 31.0 39.0 18.0 40.0 40 32.57551871728718 36.0 30.0 39.0 16.0 40.0 41 32.375436211019874 35.0 30.0 39.0 15.0 40.0 42 32.0763356062624 35.0 30.0 39.0 15.0 40.0 43 31.645886562536962 35.0 29.0 39.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 1.0 13 2.0 14 10.0 15 33.0 16 71.0 17 167.0 18 331.0 19 670.0 20 1231.0 21 2331.0 22 3777.0 23 5861.0 24 8745.0 25 12633.0 26 17086.0 27 23027.0 28 29405.0 29 36556.0 30 44198.0 31 52573.0 32 62769.0 33 74881.0 34 89313.0 35 107854.0 36 134423.0 37 152490.0 38 128121.0 39 51358.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.96363281441571 25.783112371035877 16.159977536755196 19.093277277793216 2 24.33790643712359 26.22199186284343 29.318957882377607 20.12114381765538 3 25.2092226236416 24.260881355410653 31.82943704377544 18.700458977172303 4 19.81967861020212 19.43753419730922 31.157751406116425 29.58503578637223 5 12.220543675913843 41.63585503129565 33.2323320713785 12.911269221412011 6 32.216774158806295 38.053659845315174 12.572012681732556 17.15755331414598 7 24.36319681975842 34.68571170310052 21.2679617009369 19.683129776204154 8 28.21541251691234 35.72482909759491 18.066756994040894 17.993001391451852 9 24.457434747447163 13.803933183386047 21.74338243001151 39.99524963915528 10 17.364203627006283 29.472238756597857 32.02002844446838 21.143529171927483 11 33.96459923398027 22.18283888872328 22.548251261393894 21.304310615902555 12 19.5952384844618 29.1536568643195 31.469602017845588 19.781502633373112 13 33.12703561135894 20.51184657296083 26.744339233461 19.616778582219226 14 19.523117621434704 23.438607355751063 29.349921772903905 27.68835324991033 15 23.294461790847574 30.120461073485387 26.038997193056012 20.546079942611026 16 20.696379821159493 27.93606437412073 28.56091953138748 22.806636273332302 17 21.297867818805464 27.1330226046017 28.990086746974047 22.57902282961879 18 21.986093174385363 24.75659208728355 31.01360584121294 22.243708897118147 19 22.44064693375747 24.302999939418473 33.03799038580815 20.218362741015905 20 22.887026995319836 24.003169471527166 32.840571543415315 20.269231989737683 21 22.010998912417385 24.498976364550767 33.61255326125735 19.8774714617745 22 20.513385151372077 25.01613103303039 33.26887330864556 21.20161050695197 23 21.31315744176721 25.225570019261077 34.1409587843692 19.320313754602513 24 21.230555013313513 25.328943256266584 31.983775690653427 21.456726039766483 25 21.463938126069195 25.542805655429596 32.504584482859755 20.488671735641457 26 21.013711618478712 26.323153393382764 32.5164123043962 20.146722683742325 27 20.588102365468146 25.892447599384955 32.41698167456951 21.10246836057739 28 20.532136575759118 26.432103977129035 32.574685961722096 20.461073485389754 29 20.748883809443218 25.255091492526837 32.20513865957126 21.79088603845869 30 20.941109949698102 25.99755173710311 33.234928422447474 19.826409890751318 31 21.100256654111227 25.85071365997994 33.01779654416057 20.031233141748267 32 21.177666380426974 25.55530660502096 32.22985207530187 21.037174939250193 33 20.609065496321357 26.0420743498785 32.5094887015456 20.839371452254547 34 20.33365996070855 26.083904450434215 32.96221539905435 20.62022018980288 35 19.805062115295296 27.66210125576847 32.37611318552082 20.156723443415416 36 22.107352385421585 25.445394409767662 31.85876619473979 20.588487010070956 37 21.09140982824657 26.47835749061708 31.582399047619962 20.84783363351639 38 21.20738017599414 24.884774901170378 32.754795796988425 21.15304912584706 39 20.209804398603357 24.998052736698266 33.51014163575887 21.282001228939507 40 19.590045782323852 25.684547191565514 32.5062192224217 22.219187803688932 41 20.695514370803167 24.845444990532936 32.736140533752085 21.722900104911815 42 20.209708237452652 26.403544115370302 31.425464049673003 21.961283597504043 43 20.37173977638686 26.30401732439291 30.907540091987755 22.416702807232472 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 94.0 1 150.0 2 206.0 3 343.5 4 481.0 5 481.0 6 1066.5 7 1652.0 8 1939.0 9 2226.0 10 3748.5 11 5271.0 12 5271.0 13 10987.5 14 16704.0 15 27647.0 16 38590.0 17 32839.0 18 27088.0 19 27088.0 20 31507.0 21 35926.0 22 27114.0 23 18302.0 24 19111.0 25 19920.0 26 19920.0 27 20908.5 28 21897.0 29 23344.5 30 24792.0 31 27013.5 32 29235.0 33 29235.0 34 32433.5 35 35632.0 36 39255.5 37 42879.0 38 45306.0 39 47733.0 40 47733.0 41 50071.0 42 52409.0 43 55816.5 44 59224.0 45 63746.5 46 68269.0 47 68269.0 48 87409.5 49 106550.0 50 99192.5 51 91835.0 52 84245.5 53 76656.0 54 76656.0 55 67400.0 56 58144.0 57 50692.0 58 43240.0 59 38269.5 60 33299.0 61 33299.0 62 29362.0 63 25425.0 64 21795.5 65 18166.0 66 15639.0 67 13112.0 68 13112.0 69 11196.5 70 9281.0 71 7763.5 72 6246.0 73 5212.5 74 4179.0 75 4179.0 76 3241.5 77 2304.0 78 1831.5 79 1359.0 80 1055.0 81 751.0 82 751.0 83 577.0 84 403.0 85 321.0 86 239.0 87 174.0 88 109.0 89 109.0 90 83.0 91 57.0 92 38.0 93 19.0 94 16.0 95 13.0 96 13.0 97 8.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1039921.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.884153484201924 #Duplication Level Percentage of deduplicated Percentage of total 1 85.05758671986608 46.68313644528945 2 8.343444390585255 9.158457650395695 3 2.4041844736002975 3.958548889602418 4 1.0762283383425835 2.3627152522256787 5 0.6494505618903811 1.7822272159596426 6 0.4220787179789841 1.3899259883984245 7 0.30217150130124654 1.1609098939178535 8 0.22701438926154113 0.9967594066682227 9 0.18554593998451077 0.9165178663632367 >10 1.162263486157501 12.066123903969116 >50 0.107485558751718 4.0705922884533186 >100 0.05444138041666709 5.448160261535791 >500 0.004404642317052125 1.6571140713707486 >1k 0.002995156775595445 2.9941576767184377 >5k 3.5237138536417E-4 1.6329395648735388 >10k+ 3.5237138536417E-4 3.7217136242584687 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20060 1.9289926830980428 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 18428 1.7720576851510836 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9700 0.9327631618170996 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7187 0.6911101901009787 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3448 0.3315636476232329 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3411 0.32800568504722954 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2817 0.27088596152977007 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2141 0.20588102365468147 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2094 0.20136144957165017 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2069 0.1989574208040803 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1988 0.19116836759715403 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1849 0.17780196764946568 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1583 0.15222310156252256 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1534 0.14751120517808566 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1249 0.12010527722778942 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1216 0.11693195925459722 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 1164 0.11193157941805194 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 1146 0.11020067870540165 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1114 0.10712352188291226 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1096 0.10539262117026198 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1045 0.1004884024844195 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 9.616115070279377E-5 0.0 5 0.0 0.0 0.0 9.616115070279377E-5 0.0 6 0.0 0.0 0.0 9.616115070279377E-5 0.0 7 0.0 0.0 0.0 9.616115070279377E-5 0.0 8 0.0 0.0 0.0 9.616115070279377E-5 0.0 9 0.0 0.0 0.0 9.616115070279377E-5 0.0 10 0.0 0.0 0.0 1.9232230140558753E-4 0.0 11 0.0 0.0 0.0 1.9232230140558753E-4 0.0 12 0.0 0.0 0.0 1.9232230140558753E-4 0.0 13 0.0 0.0 0.0 1.9232230140558753E-4 0.0 14 0.0 0.0 0.0 4.8080575351396883E-4 0.0 15 0.0 0.0 0.0 5.769669042167626E-4 0.0 16 9.616115070279377E-5 0.0 0.0 9.616115070279377E-4 0.0 17 9.616115070279377E-5 0.0 0.0 0.001250094959136319 0.0 18 9.616115070279377E-5 0.0 0.0 0.001634739561947494 0.0 19 1.9232230140558753E-4 0.0 0.0 0.002596351068975432 0.0 20 1.9232230140558753E-4 0.0 0.0 0.005000379836545276 0.0 21 1.9232230140558753E-4 0.0 0.0 0.010096920823793347 0.0 22 1.9232230140558753E-4 0.0 0.0 0.018174457482828022 0.0 23 1.9232230140558753E-4 0.0 0.0 0.02221322581234536 0.0 24 1.9232230140558753E-4 0.0 0.0 0.029232989813649305 0.0 25 1.9232230140558753E-4 0.0 0.0 0.03259863008824709 0.0 26 1.9232230140558753E-4 0.0 0.0 0.03894526603463148 0.0 27 1.9232230140558753E-4 0.0 0.0 0.07654427595942384 0.0 28 1.9232230140558753E-4 0.0 0.0 0.17049372019605336 0.0 29 1.9232230140558753E-4 0.0 0.0 0.2826176219155109 0.0 30 1.9232230140558753E-4 0.0 0.0 0.44474532200042116 0.0 31 3.8464460281117507E-4 0.0 0.0 0.656972981601487 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4880 0.0 25.816597 1 GCTATCC 70 5.101152E-6 21.142859 3 TATCTCG 50 0.0070344415 18.5 10 TCGTAGC 50 0.0070344415 18.5 2 CTAGGCG 50 0.0070344415 18.5 22 GTATCAA 6905 0.0 18.245474 2 CTATGCT 65 0.0015797974 17.076923 4 TTCGTTA 130 2.5880763E-7 15.653846 30 GTATTAG 155 7.203198E-9 15.516129 1 GCGTTTC 85 5.3635397E-4 15.235294 33 TAGATGT 170 1.4842954E-9 15.235294 4 ACGTTCG 110 1.4515244E-5 15.136364 22 ATACACA 430 0.0 15.058139 37 CGAACTA 100 1.09320434E-4 14.8 24 CTTCGTT 150 8.097231E-8 14.799999 29 TACGCTG 75 0.0041040573 14.799999 5 TACACTG 125 2.957906E-6 14.799999 5 CGCCACG 125 2.957906E-6 14.799999 18 TACCCTT 115 2.2093327E-5 14.478261 5 CGTTCGC 130 4.4426924E-6 14.230769 23 >>END_MODULE