##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088571_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 747168 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.681941678444474 31.0 31.0 34.0 30.0 34.0 2 31.850170242836953 31.0 31.0 34.0 30.0 34.0 3 31.9822034669579 33.0 31.0 34.0 30.0 34.0 4 35.65696603708938 37.0 35.0 37.0 33.0 37.0 5 35.571725502162835 37.0 35.0 37.0 33.0 37.0 6 35.619882007794764 37.0 35.0 37.0 33.0 37.0 7 35.46554054777506 37.0 35.0 37.0 33.0 37.0 8 35.50989871086556 37.0 35.0 37.0 33.0 37.0 9 37.11494469784573 39.0 37.0 39.0 33.0 39.0 10 36.98200137050837 39.0 37.0 39.0 33.0 39.0 11 37.04396333890102 39.0 37.0 39.0 33.0 39.0 12 36.90059799134867 39.0 37.0 39.0 33.0 39.0 13 36.942678219623964 39.0 37.0 39.0 33.0 39.0 14 37.95407057047411 40.0 37.0 41.0 33.0 41.0 15 37.9611948049167 40.0 37.0 41.0 33.0 41.0 16 37.85767993275943 40.0 37.0 41.0 32.0 41.0 17 37.900167030707955 40.0 37.0 41.0 33.0 41.0 18 37.87559558225192 40.0 37.0 41.0 33.0 41.0 19 37.951918444044715 40.0 37.0 41.0 33.0 41.0 20 37.84722311448028 40.0 37.0 41.0 32.0 41.0 21 37.71468799520322 40.0 37.0 41.0 32.0 41.0 22 37.60033486444816 39.0 37.0 41.0 32.0 41.0 23 37.411247537367764 39.0 36.0 41.0 32.0 41.0 24 37.56397891772667 39.0 36.0 41.0 32.0 41.0 25 37.50852954087969 39.0 36.0 41.0 32.0 41.0 26 37.298100293374446 39.0 36.0 41.0 31.0 41.0 27 37.25712021928134 39.0 36.0 41.0 31.0 41.0 28 37.105962782131996 39.0 36.0 41.0 31.0 41.0 29 36.881948905734724 39.0 35.0 41.0 30.0 41.0 30 36.70783143817722 39.0 35.0 41.0 30.0 41.0 31 36.47942765214784 39.0 35.0 40.0 30.0 41.0 32 36.31890284380487 38.0 35.0 40.0 30.0 41.0 33 36.14967718103559 38.0 35.0 40.0 30.0 41.0 34 35.94463494153925 38.0 35.0 40.0 29.0 41.0 35 35.74426902651077 38.0 35.0 40.0 28.0 41.0 36 35.66009117092809 38.0 35.0 40.0 27.0 41.0 37 35.50599463574457 38.0 35.0 40.0 26.0 41.0 38 35.35851642468628 38.0 34.0 40.0 25.0 41.0 39 35.20941341170928 38.0 34.0 40.0 25.0 41.0 40 35.020284594629324 38.0 34.0 40.0 24.0 41.0 41 34.88620765343269 38.0 34.0 40.0 24.0 41.0 42 34.576575816951475 38.0 33.0 40.0 22.0 41.0 43 34.199319296329605 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 1.0 15 5.0 16 7.0 17 20.0 18 46.0 19 109.0 20 267.0 21 490.0 22 894.0 23 1615.0 24 2616.0 25 4044.0 26 6035.0 27 8738.0 28 11689.0 29 15332.0 30 19606.0 31 23952.0 32 28968.0 33 36472.0 34 45013.0 35 55597.0 36 73574.0 37 107368.0 38 139233.0 39 165475.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.54741637757506 21.1768972975288 14.619068268448327 22.656618056447815 2 18.238602295601524 23.837744657158765 35.79449334018587 22.129159707053837 3 19.210806672662642 24.610127842734165 33.51361407340786 22.66545141119534 4 13.11887018716005 16.33849415392522 36.805377103944494 33.73725855497023 5 12.137297100518223 39.140996402415524 34.914369994432306 13.807336502633946 6 31.62541757676988 38.28991605636215 13.771200051394064 16.313466315473896 7 25.15900038545548 34.1164236155724 21.553787100089938 19.17078889888218 8 27.436935200650993 34.506295772838236 19.08539980298942 18.97136922352135 9 24.490476037517666 14.699773009550729 22.07334896569446 38.73640198723714 10 16.215897897126215 28.265396805002357 33.112365625936874 22.406339671934557 11 32.77991027452996 23.12732879352435 23.667100304081544 20.425660627864147 12 21.04867981498137 28.062497323225834 31.045226776307338 19.84359608548546 13 31.69969805987408 21.404021585506875 26.17992205233629 20.716358302282753 14 20.070854212171827 23.31015246905649 28.803160734935112 27.81583258383657 15 22.281735834511114 30.570634716690222 25.748693734207034 21.398935714591634 16 21.24769797421731 28.830597670135766 26.787282110582893 23.13442224506403 17 21.278480877125357 27.454334232729455 27.49247826459377 23.774706625551413 18 22.469511542250203 26.151682084885863 30.18424236584008 21.194564007023857 19 22.356685511156797 25.48329157565635 31.553144674290117 20.60687823889674 20 23.138972761146086 25.239838965266177 30.94712300312647 20.674065270461263 21 21.83779283909375 26.070308150241985 31.582589190115208 20.50930982054906 22 20.740583108484305 26.493104629748597 31.088322840378602 21.677989421388496 23 21.63328729281768 26.45482675917598 31.7346299627393 20.177255985267035 24 21.375246263223264 26.717685982269046 29.937176110325925 21.969891644181764 25 21.313814296115467 26.785006852541866 30.986203905948862 20.91497494539381 26 20.87549252644653 27.830554841749112 30.77781703713221 20.51613559467215 27 20.020664696560882 27.68052164974946 30.508533556040945 21.790280097648722 28 20.45604201464731 27.40561694290976 30.636215683755193 21.50212535868774 29 20.77042914043428 27.271644395905607 29.94507259411538 22.012853869544735 30 20.66442888346396 27.584425457193028 31.541634545376674 20.209511113966336 31 21.40442310163176 27.408293717075676 31.226176709923337 19.961106471369224 32 20.774845817808043 27.2363109769155 30.399990363613007 21.588852841663456 33 20.542100304081544 27.099126300912246 31.080426356589147 21.278347038417063 34 19.83650263394578 27.412308878324552 31.684574285836653 21.066614201893014 35 19.43418347680843 29.329682213371022 30.640632361128954 20.595501948691595 36 21.48552935885905 27.332808685596817 30.363318557539937 20.818343398004195 37 20.551067497537368 27.97443145316716 30.426891943980472 21.047609105315 38 20.259165274744102 26.437427727097518 31.832198381086986 21.471208617071394 39 19.612991991091697 26.379743243822006 32.55225063171871 21.455014133367595 40 18.8307047411024 26.63457214441732 32.2453584735963 22.289364640883978 41 19.840517795194653 25.766895798535266 32.533780889973876 21.8588055162962 42 18.902442288748983 27.369614330378173 31.74921838194355 21.97872499892929 43 18.952364126943337 27.218644267420444 31.420644353077222 22.408347252558997 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 278.0 1 248.0 2 218.0 3 532.0 4 846.0 5 846.0 6 1270.5 7 1695.0 8 1827.5 9 1960.0 10 2990.0 11 4020.0 12 4020.0 13 7067.0 14 10114.0 15 16940.0 16 23766.0 17 21647.5 18 19529.0 19 19529.0 20 19558.5 21 19588.0 22 15718.0 23 11848.0 24 13164.0 25 14480.0 26 14480.0 27 16206.0 28 17932.0 29 19068.5 30 20205.0 31 21923.5 32 23642.0 33 23642.0 34 26020.0 35 28398.0 36 30950.5 37 33503.0 38 35263.5 39 37024.0 40 37024.0 41 38289.0 42 39554.0 43 41695.5 44 43837.0 45 46849.0 46 49861.0 47 49861.0 48 63424.0 49 76987.0 50 71333.5 51 65680.0 52 59351.0 53 53022.0 54 53022.0 55 47365.0 56 41708.0 57 35569.5 58 29431.0 59 26023.0 60 22615.0 61 22615.0 62 19814.5 63 17014.0 64 14767.5 65 12521.0 66 10772.5 67 9024.0 68 9024.0 69 7568.0 70 6112.0 71 5170.5 72 4229.0 73 3471.5 74 2714.0 75 2714.0 76 2192.5 77 1671.0 78 1315.5 79 960.0 80 754.5 81 549.0 82 549.0 83 427.5 84 306.0 85 234.5 86 163.0 87 126.5 88 90.0 89 90.0 90 68.0 91 46.0 92 32.0 93 18.0 94 13.5 95 9.0 96 9.0 97 5.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 747168.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.21586328735729 #Duplication Level Percentage of deduplicated Percentage of total 1 85.18053765540408 50.44039072545997 2 8.423015235841621 9.975522373458498 3 2.421402602478108 4.301563364159843 4 1.1692950381971787 2.769632604978774 5 0.6389315593850683 1.89174419352621 6 0.4294316321727212 1.5257498893203933 7 0.29455393111595934 1.220958572100141 8 0.20958489793492346 0.9928600530567324 9 0.1737354214180584 0.9259103666576834 >10 0.9447287060121554 10.279184648851256 >50 0.06656089495594242 2.7338155272507025 >100 0.04052494878026123 4.616578321171575 >500 0.004754323599509713 1.888673347241744 >1k 0.002263963618814149 2.4581711027132753 >5k 4.5279272376282987E-4 2.328934794739039 >10k+ 2.2639636188141494E-4 1.6503101153141588 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 12310 1.6475544991220181 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 8709 1.1656013105486316 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8663 1.159444729967022 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3715 0.49721080131911427 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2123 0.28413957771210757 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1901 0.254427384470427 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1780 0.23823290076662812 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1754 0.23475309435093578 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1622 0.21708638485588247 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1607 0.2150788042314446 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1517 0.20303332048481731 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1203 0.16100796607991777 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1114 0.14909632104158638 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 873 0.11684119234228448 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 859 0.11496745042614245 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 829 0.1109522891772667 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 779 0.10426035376247378 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 776 0.10385883763758619 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 1.338387082958585E-4 0.0 0.0 4.0151612488757547E-4 0.0 11 1.338387082958585E-4 0.0 0.0 6.691935414792925E-4 0.0 12 1.338387082958585E-4 0.0 0.0 0.0012045483746627264 0.0 13 1.338387082958585E-4 0.0 0.0 0.0012045483746627264 0.0 14 2.67677416591717E-4 0.0 0.0 0.0016060644995503019 0.0 15 2.67677416591717E-4 0.0 0.0 0.0022752580410295943 0.0 16 2.67677416591717E-4 0.0 0.0 0.003747483832284038 0.0 17 6.691935414792925E-4 0.0 0.0 0.0054873870401301985 0.0 18 9.368709580710095E-4 0.0 0.0 0.005755064456721915 0.0 19 9.368709580710095E-4 0.0 0.0 0.007227290247976359 0.0 20 9.368709580710095E-4 0.0 0.0 0.011643967621739689 0.0 21 9.368709580710095E-4 0.0 0.0 0.01619448370379888 0.0 22 9.368709580710095E-4 0.0 0.0 0.02489399974302968 0.0 23 9.368709580710095E-4 0.0 0.0 0.029176838408497153 0.0 24 9.368709580710095E-4 0.0 0.0 0.03801019315602381 0.0 25 9.368709580710095E-4 0.0 0.0 0.04242687052978714 0.0 26 9.368709580710095E-4 0.0 0.0 0.05005567690265108 0.0 27 9.368709580710095E-4 0.0 0.0 0.10144974088826074 0.0 28 9.368709580710095E-4 0.0 0.0 0.23903593301640327 0.0 29 9.368709580710095E-4 0.0 0.0 0.43484196325324426 0.0 30 9.368709580710095E-4 0.0 0.0 0.714966379716476 0.0 31 9.368709580710095E-4 0.0 0.0 1.0756616985738148 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTTAT 55 1.9015033E-5 23.545454 9 GCTATCC 40 0.0019305577 23.125002 3 CCGTACA 40 0.0019305577 23.125002 32 CGCACTA 40 0.0019305577 23.125002 29 TACCCCA 50 2.7008765E-4 22.199999 5 TGAACGG 50 2.7008765E-4 22.199999 25 GGTATGA 45 0.0038245732 20.555557 1 TGCGTGC 45 0.0038245732 20.555557 10 TGCGGAT 55 5.1407784E-4 20.181818 32 ACCGTTA 55 5.1407784E-4 20.181818 8 CTAATAC 110 1.7516868E-9 20.181818 3 GGTATCA 3250 0.0 20.093845 1 GACCGTT 65 6.8979985E-5 19.923077 7 GTATTGG 275 0.0 18.836365 1 CGTGCGA 60 9.2326937E-4 18.5 10 TTCGTTA 80 1.6154363E-5 18.5 30 CCGTTTA 60 9.2326937E-4 18.5 27 CGTGCAC 50 0.0070326356 18.499998 3 TCTAATA 100 2.871584E-7 18.499998 2 TGCGACA 50 0.0070326356 18.499998 19 >>END_MODULE