##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088567_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5245453 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.663410386100114 31.0 31.0 34.0 30.0 34.0 2 31.822379306420245 31.0 31.0 34.0 30.0 34.0 3 31.956374978481364 31.0 31.0 34.0 30.0 34.0 4 35.63771575114676 37.0 35.0 37.0 33.0 37.0 5 35.54457679822887 37.0 35.0 37.0 33.0 37.0 6 35.586437053196356 37.0 35.0 37.0 33.0 37.0 7 35.45173162356044 37.0 35.0 37.0 33.0 37.0 8 35.48563393857499 37.0 35.0 37.0 33.0 37.0 9 37.09182600625723 39.0 37.0 39.0 33.0 39.0 10 36.9399653375981 39.0 37.0 39.0 33.0 39.0 11 37.006657194335745 39.0 37.0 39.0 33.0 39.0 12 36.86152826076223 39.0 37.0 39.0 32.0 39.0 13 36.91340824138545 39.0 37.0 39.0 33.0 39.0 14 37.94553320752278 40.0 37.0 41.0 33.0 41.0 15 37.950878408404385 40.0 37.0 41.0 33.0 41.0 16 37.84373113246844 40.0 37.0 41.0 32.0 41.0 17 37.86395950931216 40.0 37.0 41.0 32.0 41.0 18 37.829741873580794 40.0 37.0 41.0 32.0 41.0 19 37.88661722829277 40.0 37.0 41.0 32.0 41.0 20 37.785337891694006 40.0 37.0 41.0 32.0 41.0 21 37.64703868283635 40.0 37.0 41.0 32.0 41.0 22 37.528728595985896 39.0 36.0 41.0 32.0 41.0 23 37.36717229188785 39.0 36.0 41.0 31.0 41.0 24 37.52165771002047 39.0 36.0 41.0 32.0 41.0 25 37.47588358908182 39.0 36.0 41.0 32.0 41.0 26 37.27382897149207 39.0 36.0 41.0 31.0 41.0 27 37.23113447017827 39.0 36.0 41.0 31.0 41.0 28 37.08803586649237 39.0 36.0 41.0 31.0 41.0 29 36.877614383352594 39.0 36.0 41.0 30.0 41.0 30 36.74695722180715 39.0 35.0 41.0 30.0 41.0 31 36.53416606725863 39.0 35.0 40.0 30.0 41.0 32 36.38202649037176 38.0 35.0 40.0 30.0 41.0 33 36.22634422613262 38.0 35.0 40.0 30.0 41.0 34 36.04351464020362 38.0 35.0 40.0 29.0 41.0 35 35.853147097114395 38.0 35.0 40.0 28.0 41.0 36 35.79668829365166 38.0 35.0 40.0 27.0 41.0 37 35.667067267593474 38.0 35.0 40.0 27.0 41.0 38 35.52876348334453 38.0 35.0 40.0 26.0 41.0 39 35.4023370336175 38.0 34.0 40.0 26.0 41.0 40 35.239414975217585 38.0 34.0 40.0 25.0 41.0 41 35.12431414407869 38.0 34.0 40.0 24.0 41.0 42 34.86447347826775 38.0 34.0 40.0 23.0 41.0 43 34.498950614942125 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 5.0 13 9.0 14 17.0 15 29.0 16 78.0 17 198.0 18 382.0 19 848.0 20 1830.0 21 3608.0 22 6742.0 23 11580.0 24 18729.0 25 28804.0 26 41924.0 27 59006.0 28 80403.0 29 105340.0 30 134457.0 31 165539.0 32 204552.0 33 252410.0 34 312242.0 35 389348.0 36 510461.0 37 735916.0 38 1006547.0 39 1174446.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.71597762862426 20.951974977185 13.959213818139254 23.372833576051487 2 18.485858132748497 23.60985790931689 35.179668943749945 22.724615014184664 3 19.30994329755695 24.488809641417053 32.96977401189182 23.231473049134173 4 13.377319365934648 16.385810720256192 36.789310665828104 33.44755924798106 5 12.56787545327353 38.81069947628927 34.932426236590054 13.688998833847144 6 31.99643577018038 38.171364799188936 13.960662692049667 15.871536738581016 7 26.10228325370564 33.48713638269183 21.49680875989166 18.91377160371087 8 27.405850362208945 34.42417652012133 19.09335571208054 19.076617405589182 9 25.022033368710005 14.409241680365833 21.458127639309705 39.110597311614455 10 16.203195415152898 28.124987489164425 33.2149959212293 22.456821174453378 11 33.64033573458765 22.77225627605471 23.21366715134041 20.37374083801723 12 21.339091209090995 27.459382440372643 30.80016158756927 20.401364762967088 13 31.38249451477308 20.944520902198533 26.039543200558658 21.63344138246973 14 20.60538908650978 22.50553002762583 28.276528261715434 28.61255262414895 15 22.925417499689733 29.79559630026234 25.202360978165277 22.076625221882647 16 21.872734347252752 28.364909570250653 26.314009485930008 23.448346596566587 17 21.676335675870128 27.136550456176046 27.296250676538325 23.890863191415498 18 22.70475019030768 25.86438197044183 29.587053777814802 21.843814061435683 19 22.844299624836978 25.089768224021835 30.725373004009377 21.34055914713181 20 23.45681107046427 25.086927668592207 30.137320837685515 21.31894042325801 21 22.435659989709183 25.76934728039695 30.572783704286362 21.222209025607512 22 21.52662505983754 26.189234752460845 30.254622432037802 22.02951775566381 23 22.18449007168685 26.159170618819765 30.756866947430474 20.899472362062916 24 22.00444842418758 26.290103066408182 29.089194012414183 22.61625449699006 25 22.072126087108206 26.2384964654149 30.16057907677373 21.528798370703157 26 21.614510700982358 27.078690820411506 30.053743690011135 21.253054788594998 27 20.90135971097253 27.072151823684248 29.797998380692764 22.228490084650456 28 21.293413552652176 26.83261102520602 29.90290829028494 21.971067131856866 29 21.54498381741291 26.858023511029455 29.32356843155396 22.273424240003674 30 21.45563023822728 27.100881468197315 30.50720309570975 20.936285197865658 31 22.039888642601507 26.876134434909627 30.27894826242843 20.805028660060437 32 21.44177061542635 26.800392644829724 29.613114444071847 22.144722295672082 33 21.265465537485515 26.63344805491537 30.262171827676276 21.83891457992284 34 20.815818957866938 26.91300446310357 30.678894654093746 21.59228192493575 35 20.432934962909783 28.573585541610992 29.769878788352504 21.223600707126725 36 22.192954545584527 26.878955926208853 29.526868318141446 21.401221210065174 37 21.23723156036285 27.269865920064483 29.699036479785445 21.793866039787222 38 21.032578120516952 26.14477720036763 30.782012535428304 22.040632143687112 39 20.651714923382215 26.02166104624329 31.35578566808243 21.970838362292064 40 19.84722768462514 26.332597013070174 31.274133997578474 22.54604130472621 41 20.658482689674276 25.38856033978381 31.52145296125997 22.431504009281944 42 19.821395787932904 26.924423877213272 30.843780317924878 22.410400016928946 43 19.825075165100138 26.50939775840142 30.641262060683793 23.02426501581465 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1401.0 1 1356.0 2 1311.0 3 3149.0 4 4987.0 5 4987.0 6 7647.5 7 10308.0 8 10899.0 9 11490.0 10 16925.0 11 22360.0 12 22360.0 13 40164.0 14 57968.0 15 97826.5 16 137685.0 17 125998.5 18 114312.0 19 114312.0 20 117100.0 21 119888.0 22 97431.5 23 74975.0 24 84788.5 25 94602.0 26 94602.0 27 105924.0 28 117246.0 29 126481.5 30 135717.0 31 150704.0 32 165691.0 33 165691.0 34 185216.0 35 204741.0 36 222954.5 37 241168.0 38 255372.5 39 269577.0 40 269577.0 41 280297.0 42 291017.0 43 306216.0 44 321415.0 45 334586.0 46 347757.0 47 347757.0 48 422179.5 49 496602.0 50 468888.5 51 441175.0 52 404692.5 53 368210.0 54 368210.0 55 334491.0 56 300772.0 57 265984.0 58 231196.0 59 209449.5 60 187703.0 61 187703.0 62 165214.5 63 142726.0 64 124305.0 65 105884.0 66 90878.5 67 75873.0 68 75873.0 69 65114.0 70 54355.0 71 46115.5 72 37876.0 73 31328.0 74 24780.0 75 24780.0 76 19703.0 77 14626.0 78 11388.0 79 8150.0 80 6468.0 81 4786.0 82 4786.0 83 3632.0 84 2478.0 85 1839.0 86 1200.0 87 916.5 88 633.0 89 633.0 90 588.5 91 544.0 92 347.0 93 150.0 94 110.5 95 71.0 96 71.0 97 50.0 98 29.0 99 23.5 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5245453.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.9373357335468 #Duplication Level Percentage of deduplicated Percentage of total 1 74.81321461613139 32.122801132787245 2 12.862143759052064 11.045323696711245 3 4.869810066398645 6.272900093386935 4 2.301688998095109 3.9531357306168267 5 1.2613591725266209 2.7079701135682153 6 0.8199355486188263 2.112350875854986 7 0.5323371587201036 1.5999997515185236 8 0.3832428813507352 1.3164342611238689 9 0.27675390833189273 1.0694767929855944 >10 1.6151175019061608 12.984090891090217 >50 0.14632038238703815 4.381239297355354 >100 0.10417314598703703 8.58233757634782 >500 0.008511047406705415 2.464148288038431 >1k 0.00476796694544297 3.924363867478918 >5k 3.119230711971097E-4 1.0267950763354567 >10k+ 3.119230711971097E-4 4.43663255479996 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 72809 1.388040270306492 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 52655 1.0038217862213235 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 51073 0.9736623319282434 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22235 0.4238909394479371 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 11737 0.22375569850687826 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11200 0.21351826048198316 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10174 0.1939584626914015 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9742 0.185722758358525 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 9527 0.18162397032248692 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8721 0.1662582812199442 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7245 0.13811962474928285 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6638 0.12654769759637538 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6235 0.11886485304510401 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5558 0.10595843676418414 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 1.906413040017707E-5 0.0 0.0 0.0 0.0 6 1.906413040017707E-5 0.0 0.0 0.0 0.0 7 3.812826080035414E-5 0.0 0.0 0.0 0.0 8 3.812826080035414E-5 0.0 0.0 1.906413040017707E-5 0.0 9 3.812826080035414E-5 0.0 0.0 5.71923912005312E-5 0.0 10 3.812826080035414E-5 0.0 0.0 9.532065200088534E-5 0.0 11 3.812826080035414E-5 0.0 0.0 1.906413040017707E-4 0.0 12 3.812826080035414E-5 0.0 0.0 2.0970543440194773E-4 0.0 13 3.812826080035414E-5 0.0 0.0 2.478336952023019E-4 0.0 14 7.625652160070827E-5 0.0 0.0 2.6689782560247895E-4 0.0 15 7.625652160070827E-5 0.0 0.0 3.4315434720318724E-4 0.0 16 7.625652160070827E-5 0.0 0.0 6.863086944063745E-4 0.0 17 7.625652160070827E-5 0.0 0.0 9.913347808092076E-4 0.0 18 9.532065200088534E-5 0.0 0.0 0.0011819760848109783 0.0 19 9.532065200088534E-5 0.0 0.0 0.0015632586928145196 0.0 20 9.532065200088534E-5 0.0 0.0 0.002783363038425852 0.0 21 9.532065200088534E-5 0.0 0.0 0.005757367380853475 0.0 22 9.532065200088534E-5 0.0 0.0 0.009017333679283753 0.0 23 9.532065200088534E-5 0.0 0.0 0.011743504326509073 0.0 24 9.532065200088534E-5 0.0 0.0 0.01591854888414785 0.0 25 9.532065200088534E-5 0.0 0.0 0.018759104313774234 0.0 26 9.532065200088534E-5 0.0 0.0 0.02478336952023019 0.0 27 9.532065200088534E-5 0.0 0.0 0.06439863249179814 0.0 28 9.532065200088534E-5 0.0 0.0 0.16418029100632492 0.0 29 9.532065200088534E-5 0.0 0.0 0.30796196248446034 0.0 30 9.532065200088534E-5 0.0 0.0 0.4971925208366179 0.0 31 9.532065200088534E-5 0.0 0.0 0.7695808159943479 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18470 0.0 21.144289 1 GTATTGG 1615 0.0 20.04644 1 ATTGGAC 1760 0.0 18.710228 3 TTGGACC 2275 0.0 18.052748 4 TGGACCC 2205 0.0 17.954649 5 GGACCCT 2200 0.0 17.65909 6 GACCCTC 2335 0.0 16.004284 7 TAGGAGT 550 0.0 14.799999 4 TAGTACT 750 0.0 14.553332 4 CCCTCGC 2460 0.0 14.514228 9 ACCGTTA 370 0.0 14.5 8 ACCCTCG 2665 0.0 14.300188 8 GTCGTAC 185 4.9112714E-9 14.0 1 TCGCATG 2590 0.0 13.928572 12 GTATTAG 1090 0.0 13.917431 1 CTAATAC 1295 0.0 13.857142 3 CCTCGCA 2570 0.0 13.749026 10 GTATCAA 28605 0.0 13.613879 2 TATACCG 340 0.0 13.6029415 5 CTCGCAT 2625 0.0 13.531428 11 >>END_MODULE