Basic Statistics
Measure | Value |
---|---|
Filename | SRR2088562_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3398669 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 54423 | 1.6013033337462401 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 38207 | 1.124175375713257 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 37901 | 1.1151718510981798 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16145 | 0.4750389049360206 | No Hit |
TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG | 8621 | 0.25365812322412096 | No Hit |
ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA | 7024 | 0.20666914018399557 | No Hit |
GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG | 6877 | 0.20234391757479175 | No Hit |
GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA | 6797 | 0.19999005493032715 | No Hit |
TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA | 6006 | 0.17671623803318298 | No Hit |
GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG | 5823 | 0.17133177723397014 | No Hit |
ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA | 5417 | 0.15938592431331206 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5018 | 0.14764603437404467 | No Hit |
CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC | 4346 | 0.12787358816054167 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3605 | 0.10607093541618792 | No Hit |
TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT | 3471 | 0.10212821548670964 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14040 | 0.0 | 21.174858 | 1 |
GTATTGG | 1040 | 0.0 | 17.610577 | 1 |
ATTGGAC | 995 | 0.0 | 16.361809 | 3 |
TTGGACC | 1280 | 0.0 | 16.1875 | 4 |
TCTATAC | 220 | 1.8189894E-12 | 15.136364 | 3 |
CCGTTTA | 170 | 2.4414476E-8 | 14.147059 | 27 |
GGACCCT | 1425 | 0.0 | 14.021053 | 6 |
GACCCTC | 1390 | 0.0 | 13.97482 | 7 |
AATCGCG | 80 | 0.006301965 | 13.875001 | 23 |
GTATCAA | 21595 | 0.0 | 13.732577 | 2 |
TATACAC | 1950 | 0.0 | 13.282052 | 37 |
TCTACAC | 405 | 0.0 | 13.246914 | 3 |
TATACTG | 435 | 0.0 | 13.183908 | 5 |
GTAGCAC | 225 | 4.0745363E-10 | 13.155556 | 3 |
ATACACA | 1515 | 0.0 | 13.066007 | 37 |
TAACGCG | 85 | 0.009409681 | 13.058824 | 26 |
GAACCGT | 170 | 3.7374593E-7 | 13.058824 | 6 |
TATTGGA | 1265 | 0.0 | 13.015811 | 2 |
CGATAGA | 115 | 3.5803765E-4 | 12.869565 | 37 |
ATAGGCG | 145 | 1.3737332E-5 | 12.75862 | 32 |