##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088562_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3398669 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.681987860541877 31.0 31.0 34.0 30.0 34.0 2 31.838288459393958 31.0 31.0 34.0 30.0 34.0 3 31.959285237838696 31.0 31.0 34.0 30.0 34.0 4 35.640609014882 37.0 35.0 37.0 33.0 37.0 5 35.54985172136504 37.0 35.0 37.0 33.0 37.0 6 35.60867033535775 37.0 35.0 37.0 33.0 37.0 7 35.4639551542089 37.0 35.0 37.0 33.0 37.0 8 35.50191413167919 37.0 35.0 37.0 33.0 37.0 9 37.098736593648866 39.0 37.0 39.0 33.0 39.0 10 36.94838891342464 39.0 37.0 39.0 33.0 39.0 11 37.01484375206883 39.0 37.0 39.0 33.0 39.0 12 36.87140348177478 39.0 37.0 39.0 32.0 39.0 13 36.925662663825165 39.0 37.0 39.0 33.0 39.0 14 37.94068530945496 40.0 37.0 41.0 33.0 41.0 15 37.94902975252959 40.0 37.0 41.0 33.0 41.0 16 37.84054081171188 40.0 37.0 41.0 32.0 41.0 17 37.87651342334308 40.0 37.0 41.0 33.0 41.0 18 37.846765895707996 40.0 37.0 41.0 32.0 41.0 19 37.911567145844444 40.0 37.0 41.0 32.0 41.0 20 37.81644696791597 40.0 37.0 41.0 32.0 41.0 21 37.67453906220347 40.0 37.0 41.0 32.0 41.0 22 37.55859543839073 39.0 36.0 41.0 32.0 41.0 23 37.390879782644326 39.0 36.0 41.0 32.0 41.0 24 37.5318823339372 39.0 36.0 41.0 32.0 41.0 25 37.46880175739385 39.0 36.0 41.0 32.0 41.0 26 37.26632778890795 39.0 36.0 41.0 31.0 41.0 27 37.22227583798246 39.0 36.0 41.0 31.0 41.0 28 37.0723130143006 39.0 36.0 41.0 31.0 41.0 29 36.85295155250482 39.0 35.0 41.0 30.0 41.0 30 36.71404894092364 39.0 35.0 40.0 30.0 41.0 31 36.449533332019094 39.0 35.0 40.0 30.0 41.0 32 36.28889721240874 38.0 35.0 40.0 30.0 41.0 33 36.12147019906911 38.0 35.0 40.0 30.0 41.0 34 35.927051737018225 38.0 35.0 40.0 29.0 41.0 35 35.722383085849195 38.0 35.0 40.0 28.0 41.0 36 35.64904996632505 38.0 35.0 40.0 27.0 41.0 37 35.50592040590008 38.0 35.0 40.0 26.0 41.0 38 35.35761117072595 38.0 34.0 40.0 25.0 41.0 39 35.218600281463125 38.0 34.0 40.0 25.0 41.0 40 35.03695799738074 38.0 34.0 40.0 24.0 41.0 41 34.889152488812535 38.0 34.0 40.0 24.0 41.0 42 34.60416121722945 38.0 33.0 40.0 22.0 41.0 43 34.21415000990093 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 7.0 14 7.0 15 21.0 16 43.0 17 87.0 18 231.0 19 547.0 20 1158.0 21 2419.0 22 4371.0 23 7657.0 24 12549.0 25 19333.0 26 28106.0 27 39334.0 28 53708.0 29 70333.0 30 88680.0 31 108182.0 32 133268.0 33 164512.0 34 203985.0 35 253169.0 36 334089.0 37 486286.0 38 651210.0 39 735374.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.510838507662854 21.11314752922394 14.556698519332127 22.81931544378108 2 18.554557681256988 23.88879293629359 35.23635281929485 22.320296563154578 3 19.455145529029156 24.510124404583088 33.168719872397105 22.866010193990647 4 13.63775054293313 16.49277996768735 36.10884143174872 33.7606280576308 5 12.529552009919176 38.9489826752767 34.60516455118166 13.916300763622466 6 31.989699497067825 37.95562321602957 13.79772493290756 16.25695235399505 7 25.42565928014761 33.942640486614025 21.380664018767348 19.251036214471018 8 27.474873251852415 34.47764404241778 18.957597812555445 19.089884893174357 9 24.879268913801255 14.558051990352695 21.747896014586885 38.814783081259165 10 16.37747012139164 28.379080163440452 32.74443613073235 22.499013584435552 11 33.404753449070796 22.974788071447968 23.159860521869003 20.46059795761223 12 21.34126624275562 27.861612884337955 30.757040476727802 20.040080396178624 13 31.77149642992595 21.22881045491632 25.90914266732065 21.09055044783708 14 20.424348472887473 22.989999908787823 28.566388783373725 28.019262834950975 15 22.73972546311512 30.162219386471584 25.336977505017405 21.761077645395886 16 21.51918883539409 28.505188354617644 26.611652973561124 23.36396983642714 17 21.611519097623216 27.352737203887756 27.396195392961186 23.639548305527843 18 22.759291946347233 25.812987378294267 29.839416548066318 21.588304127292187 19 22.653897746441327 25.314910042725547 31.24643794379506 20.784754267038068 20 23.29809110566519 25.17023575994014 30.4938492097936 21.03782392460107 21 22.053456809121453 25.91679272091516 31.199978579849937 20.829771890113452 22 21.191178075887944 26.315242820056913 30.68877846003833 21.80480064401682 23 21.98095783967194 26.234152251955106 31.06469032435933 20.720199584013624 24 21.720856017458598 26.418489120299743 29.6838262272672 22.17682863497446 25 21.791354203660315 26.392272975097015 30.562464305879743 21.253908515362927 26 21.192708086606846 27.434681047198183 30.5559029137583 20.816707952436676 27 20.524299365428053 27.249255517380483 30.354824197354908 21.87162091983656 28 20.94546423908889 27.132768739762536 30.23189372074774 21.689873300400834 29 21.079546139974205 26.988653499355188 29.733169072951792 22.198631287718808 30 21.15001490289287 27.26941046627371 31.09537880858654 20.485195822246887 31 21.735979584949284 26.976648799868418 30.774959256108787 20.512412359073508 32 21.187647281921247 27.007131321114237 29.994241863505977 21.81097953345854 33 20.90483068518882 26.72669801030933 30.6982527571823 21.670218547319553 34 20.375476399731777 26.955169803237677 31.309344922968375 21.36000887406217 35 19.95584153678984 28.492094993657812 30.448184274490984 21.103879195061364 36 21.689020025192214 26.80137430270497 30.275381333104225 21.23422433899859 37 20.87976204802527 27.178698484612653 30.346350291834835 21.595189175527242 38 20.499230728264507 26.0198330581766 31.54949775926988 21.93143845428902 39 20.06367786918938 25.861535795336348 32.315356393929505 21.759429941544763 40 19.223525444813838 26.127463427594744 32.19242591732234 22.45658521026908 41 19.976879184174745 25.349188167485565 32.37976396053867 22.29416868780102 42 19.179831869475965 26.928012112977168 31.65139058849214 22.240765429054726 43 19.14019870719979 26.645578018924464 31.319996151434577 22.89422712244117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1155.0 1 1063.0 2 971.0 3 2295.5 4 3620.0 5 3620.0 6 5515.5 7 7411.0 8 8108.0 9 8805.0 10 12979.5 11 17154.0 12 17154.0 13 30414.5 14 43675.0 15 73956.0 16 104237.0 17 94645.0 18 85053.0 19 85053.0 20 85874.0 21 86695.0 22 68974.5 23 51254.0 24 57518.0 25 63782.0 26 63782.0 27 70501.5 28 77221.0 29 81755.0 30 86289.0 31 93499.5 32 100710.0 33 100710.0 34 112025.5 35 123341.0 36 135088.0 37 146835.0 38 156284.0 39 165733.0 40 165733.0 41 172785.5 42 179838.0 43 190869.0 44 201900.0 45 214930.0 46 227960.0 47 227960.0 48 283752.5 49 339545.0 50 315958.0 51 292371.0 52 265402.5 53 238434.0 54 238434.0 55 215967.0 56 193500.0 57 169478.0 58 145456.0 59 131493.5 60 117531.0 61 117531.0 62 103274.5 63 89018.0 64 77023.0 65 65028.0 66 55537.5 67 46047.0 68 46047.0 69 39393.5 70 32740.0 71 27577.5 72 22415.0 73 18292.5 74 14170.0 75 14170.0 76 11405.0 77 8640.0 78 6671.0 79 4702.0 80 3727.5 81 2753.0 82 2753.0 83 2010.0 84 1267.0 85 1013.5 86 760.0 87 539.5 88 319.0 89 319.0 90 261.0 91 203.0 92 140.0 93 77.0 94 58.0 95 39.0 96 39.0 97 25.0 98 11.0 99 7.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3398669.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.154384067299084 #Duplication Level Percentage of deduplicated Percentage of total 1 77.15251034682998 35.60926594303858 2 12.16403292177743 11.228468945579717 3 4.22426738089661 5.849053773025973 4 1.98506195415406 3.6647724731763898 5 1.0407262082445827 2.401703856211218 6 0.6425690259539835 1.7794426568178257 7 0.45654518029582153 1.475009311681336 8 0.3373346765101533 1.2455579375094168 9 0.24292624218847123 1.0090899973793175 >10 1.5232835665673377 13.20516575653954 >50 0.1380275679251285 4.414851631130318 >100 0.08267170014609175 7.196785891293874 >500 0.0055013863183190825 1.7287053190737374 >1k 0.0037742068921011915 3.338573403311582 >5k 5.117568667255853E-4 1.522976660709263 >10k+ 2.5587843336279266E-4 4.330576443521933 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 54423 1.6013033337462401 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38207 1.124175375713257 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 37901 1.1151718510981798 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16145 0.4750389049360206 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8621 0.25365812322412096 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7024 0.20666914018399557 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6877 0.20234391757479175 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6797 0.19999005493032715 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6006 0.17671623803318298 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5823 0.17133177723397014 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5417 0.15938592431331206 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5018 0.14764603437404467 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4346 0.12787358816054167 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3605 0.10607093541618792 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 3471 0.10212821548670964 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.9423283055808023E-5 0.0 0.0 0.0 0.0 3 5.8846566111616046E-5 0.0 0.0 0.0 0.0 4 5.8846566111616046E-5 0.0 0.0 0.0 0.0 5 5.8846566111616046E-5 0.0 0.0 0.0 0.0 6 5.8846566111616046E-5 0.0 0.0 0.0 0.0 7 5.8846566111616046E-5 0.0 0.0 0.0 0.0 8 5.8846566111616046E-5 0.0 0.0 0.0 0.0 9 5.8846566111616046E-5 0.0 0.0 8.826984916742407E-5 0.0 10 5.8846566111616046E-5 0.0 0.0 1.7653969833484814E-4 0.0 11 5.8846566111616046E-5 0.0 0.0 4.4134924583712036E-4 0.0 12 5.8846566111616046E-5 0.0 0.0 7.061587933393926E-4 0.0 13 5.8846566111616046E-5 0.0 0.0 7.061587933393926E-4 0.0 14 8.826984916742407E-5 0.0 0.0 7.944286425068166E-4 0.0 15 8.826984916742407E-5 0.0 0.0 0.001029814906953281 0.0 16 8.826984916742407E-5 0.0 0.0 0.0016477038511252494 0.0 17 8.826984916742407E-5 0.0 0.0 0.00223616951224141 0.0 18 8.826984916742407E-5 0.0 0.0 0.0026775187580785303 0.0 19 1.1769313222323209E-4 0.0 0.0 0.003442524117529539 0.0 20 1.1769313222323209E-4 0.0 0.0 0.005825810045049989 0.0 21 1.1769313222323209E-4 0.0 0.0 0.011622196807044169 0.0 22 1.471164152790401E-4 0.0 0.0 0.017624546550429006 0.0 23 1.471164152790401E-4 0.0 0.0 0.02247938825463733 0.0 24 1.471164152790401E-4 0.0 0.0 0.029717515886366105 0.0 25 1.471164152790401E-4 0.0 0.0 0.03363081253278857 0.0 26 1.471164152790401E-4 0.0 0.0 0.04195760163758224 0.0 27 1.471164152790401E-4 0.0 0.0 0.09418392906164148 0.0 28 1.471164152790401E-4 0.0 0.0 0.23206143346115787 0.0 29 1.471164152790401E-4 0.0 0.0 0.4425556004424085 0.0 30 1.471164152790401E-4 0.0 0.0 0.71881080505339 0.0 31 1.471164152790401E-4 0.0 0.0 1.1329140907808322 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14040 0.0 21.174858 1 GTATTGG 1040 0.0 17.610577 1 ATTGGAC 995 0.0 16.361809 3 TTGGACC 1280 0.0 16.1875 4 TCTATAC 220 1.8189894E-12 15.136364 3 CCGTTTA 170 2.4414476E-8 14.147059 27 GGACCCT 1425 0.0 14.021053 6 GACCCTC 1390 0.0 13.97482 7 AATCGCG 80 0.006301965 13.875001 23 GTATCAA 21595 0.0 13.732577 2 TATACAC 1950 0.0 13.282052 37 TCTACAC 405 0.0 13.246914 3 TATACTG 435 0.0 13.183908 5 GTAGCAC 225 4.0745363E-10 13.155556 3 ATACACA 1515 0.0 13.066007 37 TAACGCG 85 0.009409681 13.058824 26 GAACCGT 170 3.7374593E-7 13.058824 6 TATTGGA 1265 0.0 13.015811 2 CGATAGA 115 3.5803765E-4 12.869565 37 ATAGGCG 145 1.3737332E-5 12.75862 32 >>END_MODULE