##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088560_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2867645 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.75302730986576 31.0 31.0 34.0 30.0 34.0 2 31.891990117326237 31.0 31.0 34.0 30.0 34.0 3 31.992676917819324 33.0 31.0 34.0 30.0 34.0 4 35.65636436867185 37.0 35.0 37.0 33.0 37.0 5 35.606670630430195 37.0 35.0 37.0 33.0 37.0 6 35.68375618320957 37.0 35.0 37.0 33.0 37.0 7 35.509329083620884 37.0 35.0 37.0 33.0 37.0 8 35.58477461470998 37.0 35.0 37.0 33.0 37.0 9 37.16152313134994 39.0 37.0 39.0 33.0 39.0 10 37.05404748495717 39.0 37.0 39.0 33.0 39.0 11 37.114586359190206 39.0 37.0 39.0 33.0 39.0 12 36.956977589624934 39.0 37.0 39.0 33.0 39.0 13 37.01352503535131 39.0 37.0 39.0 33.0 39.0 14 37.952298837547886 40.0 37.0 41.0 33.0 41.0 15 37.9645695335371 40.0 37.0 41.0 33.0 41.0 16 37.86287877334886 40.0 37.0 41.0 32.0 41.0 17 37.97505653593802 40.0 37.0 41.0 33.0 41.0 18 37.97940435444415 40.0 37.0 41.0 33.0 41.0 19 38.069563352507025 40.0 37.0 41.0 33.0 41.0 20 37.982102387150434 40.0 37.0 41.0 33.0 41.0 21 37.85755559003991 40.0 37.0 41.0 32.0 41.0 22 37.75136252918335 40.0 37.0 41.0 32.0 41.0 23 37.557917036453254 40.0 36.0 41.0 32.0 41.0 24 37.67794967647669 40.0 37.0 41.0 32.0 41.0 25 37.60255819670845 40.0 36.0 41.0 32.0 41.0 26 37.381195022396426 39.0 36.0 41.0 32.0 41.0 27 37.3312244019047 39.0 36.0 41.0 32.0 41.0 28 37.14928416871684 39.0 35.0 41.0 31.0 41.0 29 36.9009856519897 39.0 35.0 41.0 31.0 41.0 30 36.68225216161694 39.0 35.0 40.0 30.0 41.0 31 36.3268664705708 38.0 35.0 40.0 30.0 41.0 32 36.147732372730935 38.0 35.0 40.0 30.0 41.0 33 35.94931834310035 38.0 35.0 40.0 30.0 41.0 34 35.71845050555421 38.0 35.0 40.0 29.0 41.0 35 35.48384545506853 38.0 35.0 40.0 27.0 41.0 36 35.34522962221614 38.0 35.0 40.0 26.0 41.0 37 35.132744813252685 38.0 34.0 40.0 25.0 41.0 38 34.9425179895001 38.0 34.0 40.0 24.0 41.0 39 34.74446069858717 38.0 34.0 40.0 23.0 41.0 40 34.47761141982358 38.0 33.0 40.0 22.0 41.0 41 34.24055104449818 38.0 33.0 40.0 21.0 41.0 42 33.85144256001004 38.0 33.0 40.0 18.0 41.0 43 33.398943732574985 37.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 4.0 14 11.0 15 16.0 16 31.0 17 67.0 18 198.0 19 401.0 20 915.0 21 1893.0 22 3552.0 23 6383.0 24 10614.0 25 16513.0 26 24243.0 27 34468.0 28 47405.0 29 61949.0 30 76959.0 31 93669.0 32 114200.0 33 141086.0 34 175055.0 35 216743.0 36 286008.0 37 435479.0 38 510636.0 39 609145.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.88157878677451 21.126429526667355 15.965435052107216 21.026556634450916 2 18.468359926001998 24.851786047436136 35.8223559750248 20.857498051537064 3 19.45282627382399 24.251014334061573 35.077842619989575 21.21831677212486 4 12.82170561558352 16.14188646084156 35.809558017118576 35.226849906456344 5 11.422613329055723 39.864174261458444 34.450463708025225 14.262748701460607 6 31.196643936052055 38.36810344376658 12.48393716795489 17.95131545222648 7 23.817418125325833 35.67526663865297 20.463725461136228 20.043589774884968 8 28.15334534086332 33.93878949451554 18.169368942111035 19.738496222510108 9 23.93082128366656 14.500574513232984 22.76174352125176 38.80686068184869 10 16.766196652654006 28.871146881849043 31.50797954419044 22.854676921306506 11 32.307171912841376 23.160990987378145 23.5356189486495 20.99621815113098 12 21.964015769036962 29.34697286449334 30.094485196040655 18.594526170429045 13 33.22600949559656 21.51737749965564 26.214681384899457 19.04193161984834 14 19.846424505125285 24.245888176535104 29.76853829536083 26.139149022978785 15 21.569824716797232 31.276639890920947 26.65493811123762 20.4985972810442 16 20.084599035096744 29.04585469958799 27.48987409529422 23.379672170021045 17 20.80627134809225 27.3708217021284 27.633859839694242 24.189047110085106 18 22.706436814877716 25.076534926743026 31.62190577982979 20.59512247854947 19 22.16139026971609 24.361592874989757 33.75804885193251 19.718968003361642 20 23.031477048239932 24.18950044374391 32.95836827780287 19.820654230213293 21 21.42827999979077 25.174978074343237 34.16796709495073 19.228774830915263 22 19.502169898993774 25.994605329460235 33.3162926373383 21.186932134207687 23 21.101949509091956 25.983097628890604 34.210824561617635 18.704128300399805 24 20.548115265313523 26.166662888886176 31.755116131878246 21.53010571392205 25 20.458390072690307 26.366304057859324 33.23413462963512 19.94117123981525 26 19.744529047354188 27.967757515313085 33.0910206807328 19.19669275659993 27 18.39247884588225 27.528825918131428 32.77748814794021 21.301207088046116 28 19.34960568689639 27.15726667701197 32.55908593985657 20.934041696235063 29 19.57951559554966 26.989812197813883 31.399737415196093 22.030934791440362 30 19.62802229704165 27.38944325395926 34.17166350786098 18.81087094113811 31 20.854010869546265 27.159149755287004 33.57929590308424 18.407543472082494 32 19.832719879901454 27.166368222007954 32.21783031023715 20.783081587853445 33 19.401006749440743 26.838573114873004 33.205923327329565 20.554496808356685 34 18.26223259852597 27.655131649838104 34.12005321439718 19.96258253723874 35 17.55224234519963 30.414852605535202 32.41747147921029 19.615433570054872 36 20.870017034884025 27.446493551328704 32.004484516040165 19.679004897747106 37 19.59137201431837 28.68301341344553 31.880829042646493 19.84478552958961 38 19.14602400227364 26.57281497535434 33.72139856920923 20.559762453162786 39 18.582844110759876 26.314310174376537 34.64459512945292 20.458250585410674 40 17.04555480193678 26.644511437085132 34.464238076888876 21.845695684089208 41 18.632083120469932 25.730346678197613 34.6922300354472 20.94534016588525 42 17.670457814687662 28.036420128711885 33.48964045410084 20.803481602499613 43 17.55475311623301 28.11108069513486 32.69731783397178 21.63684835466036 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 757.0 1 813.0 2 869.0 3 2288.5 4 3708.0 5 3708.0 6 5757.5 7 7807.0 8 8750.5 9 9694.0 10 15134.5 11 20575.0 12 20575.0 13 37651.5 14 54728.0 15 94558.0 16 134388.0 17 120058.5 18 105729.0 19 105729.0 20 103584.5 21 101440.0 22 75510.5 23 49581.0 24 53271.5 25 56962.0 26 56962.0 27 60539.5 28 64117.0 29 65616.0 30 67115.0 31 70238.0 32 73361.0 33 73361.0 34 81164.5 35 88968.0 36 97953.0 37 106938.0 38 113185.5 39 119433.0 40 119433.0 41 124665.5 42 129898.0 43 139962.5 44 150027.0 45 167346.0 46 184665.0 47 184665.0 48 265518.0 49 346371.0 50 314910.0 51 283449.0 52 248458.5 53 213468.0 54 213468.0 55 182922.5 56 152377.0 57 125612.0 58 98847.0 59 85991.0 60 73135.0 61 73135.0 62 63379.0 63 53623.0 64 46141.0 65 38659.0 66 32816.5 67 26974.0 68 26974.0 69 22833.5 70 18693.0 71 15599.0 72 12505.0 73 10268.5 74 8032.0 75 8032.0 76 6402.5 77 4773.0 78 3768.5 79 2764.0 80 2163.5 81 1563.0 82 1563.0 83 1182.5 84 802.0 85 635.0 86 468.0 87 329.5 88 191.0 89 191.0 90 160.0 91 129.0 92 82.5 93 36.0 94 27.5 95 19.0 96 19.0 97 11.5 98 4.0 99 3.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2867645.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.58004565298246 #Duplication Level Percentage of deduplicated Percentage of total 1 77.16244060348058 30.54092921781309 2 11.983632873634539 9.48625472454073 3 4.23582393880358 5.02962314627525 4 1.9019232465835627 3.0111283571298415 5 1.083520533982914 2.1442896100493836 6 0.659824613716813 1.5669533000323783 7 0.481388766991561 1.3337372562051246 8 0.3346925462418081 1.0597717007970968 9 0.2582726427981714 0.920019869358125 >10 1.5868623059951188 12.118531237445255 >50 0.18044604204809103 4.96385097423152 >100 0.11369143075362685 8.597922605187923 >500 0.008563657232580561 2.334701193118634 >1k 0.007592520845380568 6.690417636130949 >5k 6.179958827635347E-4 1.741119471211432 >10k+ 7.06281008872611E-4 8.460749700473269 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 72982 2.545015160523705 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 51086 1.781461791818722 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 51009 1.7787766616858085 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21103 0.7359000155179598 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 13248 0.4619818701408298 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11415 0.3980618242495148 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10685 0.3726053957166944 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10600 0.3696412910245166 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 9507 0.33152639186510185 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8725 0.30425662869706677 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8096 0.2823222539749516 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6452 0.22499298204624352 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6198 0.21613553978961833 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5477 0.19099295763596957 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5372 0.18733141654563237 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4931 0.1719529439662162 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 4872 0.16989550659164576 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4543 0.15842267784192254 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 4298 0.14987908196446909 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4207 0.14670574635284353 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 4198 0.14639189997367177 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 4146 0.14457856533845717 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 3867 0.13484932758413262 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3836 0.13376830116698546 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 3764 0.13125753013361136 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3752 0.1308390682947157 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3738 0.13035086281600408 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 3534 0.12323701155477754 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3416 0.11912213680563667 No Hit GAGTACGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA 3320 0.11577444209447126 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3263 0.11378674835971676 No Hit GTACGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAAAA 3164 0.1103344381888274 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3105 0.108277000814257 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2991 0.10430161334474804 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAAAAAAA 2980 0.10391802332576033 No Hit GGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2937 0.10241853506971749 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2908 0.10140725229238626 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.487181990797327E-5 0.0 2 0.0 0.0 0.0 3.487181990797327E-5 0.0 3 0.0 0.0 0.0 3.487181990797327E-5 0.0 4 0.0 0.0 0.0 3.487181990797327E-5 0.0 5 0.0 0.0 0.0 3.487181990797327E-5 0.0 6 0.0 0.0 0.0 3.487181990797327E-5 0.0 7 0.0 0.0 0.0 3.487181990797327E-5 0.0 8 0.0 0.0 0.0 3.487181990797327E-5 0.0 9 0.0 0.0 0.0 6.974363981594653E-5 0.0 10 6.974363981594653E-5 0.0 0.0 1.7435909953986633E-4 0.0 11 6.974363981594653E-5 0.0 0.0 5.579491185275723E-4 0.0 12 6.974363981594653E-5 0.0 3.487181990797327E-5 9.764109574232515E-4 0.0 13 6.974363981594653E-5 0.0 3.487181990797327E-5 0.0010112827773312248 0.0 14 1.3948727963189307E-4 0.0 3.487181990797327E-5 0.0013251291565029842 0.0 15 1.3948727963189307E-4 0.0 3.487181990797327E-5 0.001848206455122583 0.0 16 1.3948727963189307E-4 0.0 3.487181990797327E-5 0.0028594892324538077 0.0 17 1.3948727963189307E-4 0.0 3.487181990797327E-5 0.004254362028772739 0.0 18 1.3948727963189307E-4 0.0 3.487181990797327E-5 0.004916926607024231 0.0 19 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.006137440303803295 0.0 20 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.010984623271011578 0.0 21 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.019144629129477325 0.0 22 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.03019899604030485 0.0 23 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.036894385462635716 0.0 24 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.04554259679981309 0.0 25 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.05007593338784961 0.0 26 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.05980517114217415 0.0 27 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.11755290490977788 0.0 28 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.2786955847045223 0.0 29 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.5524742428020205 0.0 30 2.0923091944783962E-4 0.0 3.487181990797327E-5 0.9219760465469052 0.0 31 2.0923091944783962E-4 0.0 3.487181990797327E-5 1.3856317640433178 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTGG 1145 0.0 23.266375 1 ATTGGAC 1210 0.0 22.475206 3 GGTATCA 18000 0.0 21.439444 1 CCGTATA 130 3.274181E-11 19.923077 2 TTGGACC 1910 0.0 19.759163 4 TATTGGA 1365 0.0 19.652014 2 GGACCCT 1930 0.0 19.26684 6 CAATGCG 135 5.638867E-11 19.185186 19 TGGACCC 1965 0.0 18.735369 5 GTATAAC 120 5.182301E-9 18.5 1 GACCCTC 2050 0.0 17.417074 7 CGTATAC 130 1.3955287E-8 17.076923 3 ACGTTTA 90 4.4496875E-5 16.444445 26 CGTGCTA 80 3.3847717E-4 16.1875 10 TATACTG 255 0.0 15.960786 5 TCTATAC 255 0.0 15.960786 3 CGAATTA 140 3.4788172E-8 15.857142 15 ACTCTGT 1550 0.0 15.635485 37 TATACAC 1780 0.0 15.382023 37 TACGTTA 135 3.9778752E-7 15.074075 19 >>END_MODULE