##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088558_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4808429 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.788324419472556 31.0 31.0 34.0 30.0 34.0 2 31.932280792749566 31.0 31.0 34.0 30.0 34.0 3 32.05549546431901 33.0 31.0 34.0 30.0 34.0 4 35.70052339339938 37.0 35.0 37.0 35.0 37.0 5 35.639140767181964 37.0 35.0 37.0 33.0 37.0 6 35.702719536879925 37.0 35.0 37.0 33.0 37.0 7 35.55410072603755 37.0 35.0 37.0 33.0 37.0 8 35.605063940842214 37.0 35.0 37.0 33.0 37.0 9 37.21464723717455 39.0 37.0 39.0 33.0 39.0 10 37.08820261253727 39.0 37.0 39.0 33.0 39.0 11 37.14648817732361 39.0 37.0 39.0 33.0 39.0 12 37.00343708932793 39.0 37.0 39.0 33.0 39.0 13 37.0598667464987 39.0 37.0 39.0 33.0 39.0 14 38.083264201259915 40.0 37.0 41.0 33.0 41.0 15 38.08387250804785 40.0 37.0 41.0 33.0 41.0 16 37.983681988441546 40.0 37.0 41.0 33.0 41.0 17 38.03319296177608 40.0 37.0 41.0 33.0 41.0 18 38.00828753008519 40.0 37.0 41.0 33.0 41.0 19 38.07264451653544 40.0 37.0 41.0 33.0 41.0 20 37.9828894218881 40.0 37.0 41.0 33.0 41.0 21 37.846085280660276 40.0 37.0 41.0 32.0 41.0 22 37.73142038699126 40.0 37.0 41.0 32.0 41.0 23 37.54915649165247 39.0 36.0 41.0 32.0 41.0 24 37.6977310052826 40.0 37.0 41.0 32.0 41.0 25 37.640321818207156 40.0 37.0 41.0 32.0 41.0 26 37.44364011613772 39.0 36.0 41.0 32.0 41.0 27 37.408919212491234 39.0 36.0 41.0 32.0 41.0 28 37.2618884463096 39.0 36.0 41.0 31.0 41.0 29 37.04852645219468 39.0 36.0 41.0 31.0 41.0 30 36.88217253493813 39.0 35.0 41.0 31.0 41.0 31 36.596042283248856 39.0 35.0 40.0 30.0 41.0 32 36.43613724981694 38.0 35.0 40.0 30.0 41.0 33 36.254382876403085 38.0 35.0 40.0 30.0 41.0 34 36.047906291223185 38.0 35.0 40.0 30.0 41.0 35 35.8184951883453 38.0 35.0 40.0 29.0 41.0 36 35.734693181494414 38.0 35.0 40.0 27.0 41.0 37 35.564945640249654 38.0 35.0 40.0 27.0 41.0 38 35.41731031070647 38.0 35.0 40.0 26.0 41.0 39 35.27673133990332 38.0 34.0 40.0 25.0 41.0 40 35.069813654314125 38.0 34.0 40.0 24.0 41.0 41 34.90359512431191 38.0 34.0 40.0 23.0 41.0 42 34.57968309400014 38.0 33.0 40.0 22.0 41.0 43 34.19115952424378 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 6.0 13 16.0 14 18.0 15 36.0 16 38.0 17 112.0 18 276.0 19 691.0 20 1435.0 21 3030.0 22 5651.0 23 9717.0 24 16027.0 25 25187.0 26 37398.0 27 52900.0 28 72546.0 29 95446.0 30 119755.0 31 146636.0 32 178960.0 33 222387.0 34 277886.0 35 348818.0 36 464850.0 37 701543.0 38 915186.0 39 1111876.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.470877702467895 20.577427679601797 14.397924977159901 22.553769640770405 2 18.206528577213057 23.876488557905297 35.85118965050748 22.065793214374175 3 19.411745499413634 24.46994642116999 33.63649541253494 22.481812666881428 4 12.889698485721635 15.808531227143002 36.54807006612762 34.75370022100773 5 12.178634643456315 39.01319952940971 34.898695603075346 13.909470224058627 6 31.85608022911433 37.59379622741648 13.281323276271731 17.268800267197456 7 25.741546771305142 33.771154778410995 21.120474067517687 19.36682438276618 8 27.877837023277248 33.82574641322561 18.67842906695721 19.61798749653993 9 24.48244530594088 14.382452148092442 21.988741021235832 39.14636152473084 10 16.359917137177234 27.874197580956274 32.92994447874763 22.835940803118856 11 32.83332248432908 22.48129274654986 23.912862184301776 20.772522584819285 12 21.753944999499836 27.577364665257615 30.908182277413264 19.76050805782928 13 32.314837132876455 20.639318995871626 26.538335077839353 20.50750879341257 14 20.4961121397446 22.62678725213578 28.936561192855297 27.940539415264322 15 22.28330708428886 29.731581770262178 26.108839290337865 21.8762718551111 16 21.365647699071776 28.23772587678845 26.847770862375214 23.548855561764558 17 21.48107001267982 26.541059460376772 27.379774142448603 24.59809638449481 18 23.14545977490777 24.93375695055495 30.447200114632032 21.47358315990524 19 22.66998223328243 23.89377070972661 32.14758916061774 21.288657896373223 20 23.59866392952875 23.7755408263281 31.638379187880282 20.987416056262866 21 22.283639833301063 24.768193520170517 32.47378717664335 20.474379469885072 22 20.663651267388996 25.32425871318886 31.900065489164962 22.11202453025718 23 22.021350424431763 25.37947425240136 32.71661076829876 19.88256455486813 24 21.588007226476673 25.506813140008934 30.275813576534038 22.629366056980356 25 21.707713683616834 25.65636302418108 31.556959663956775 21.07896362824532 26 21.30304929115102 26.69595412555743 31.440871852324324 20.560124730967225 27 19.950778102369817 26.79367835107891 31.21978093052845 22.035762616022822 28 20.75133063210458 26.123792199073755 31.202977105412184 21.92190006340948 29 21.075220201858027 26.171208933312727 30.320173179223403 22.43339768560584 30 20.91799629359194 26.503770774196727 32.25186438231697 20.326368549894365 31 22.06853839372485 26.225551006368192 31.841148117191707 19.86476248271525 32 21.447129613435074 26.061859289177402 30.668706972693162 21.822304124694362 33 20.945718445671133 26.08278088331969 31.46570324736 21.505797423649177 34 20.16887428305586 26.858002894500473 31.949312342971066 21.02381047947261 35 19.57319116077205 29.359256422419875 30.54284465882724 20.524707757980828 36 22.170006045633617 26.62501619551833 30.42590417785102 20.779073580997036 37 21.09524753303002 27.556630242434693 30.384830471657164 20.963291752878124 38 20.792196370165808 25.928967652428682 31.725185086438835 21.553650890966676 39 20.396037874324442 25.677409399202944 32.47609562291551 21.450457103557106 40 19.049693777323114 26.347815471539665 32.11974222765897 22.48274852347825 41 20.681598917234716 25.278776082583317 32.19502669166998 21.84459830851199 42 19.27781402200178 27.531986018718378 31.351487148921198 21.838712810358643 43 19.596545982066075 27.349327607831995 30.599827927167066 22.454298482934863 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 820.0 1 997.0 2 1174.0 3 3235.5 4 5297.0 5 5297.0 6 8133.0 7 10969.0 8 11678.5 9 12388.0 10 18544.0 11 24700.0 12 24700.0 13 45661.0 14 66622.0 15 113223.0 16 159824.0 17 144822.5 18 129821.0 19 129821.0 20 129358.5 21 128896.0 22 97537.5 23 66179.0 24 73192.5 25 80206.0 26 80206.0 27 89129.5 28 98053.0 29 105572.0 30 113091.0 31 120875.5 32 128660.0 33 128660.0 34 144060.0 35 159460.0 36 176054.5 37 192649.0 38 205301.0 39 217953.0 40 217953.0 41 230895.5 42 243838.0 43 261232.5 44 278627.0 45 300454.0 46 322281.0 47 322281.0 48 431580.0 49 540879.0 50 502532.5 51 464186.0 52 416974.0 53 369762.0 54 369762.0 55 324845.5 56 279929.0 57 235684.5 58 191440.0 59 170793.0 60 150146.0 61 150146.0 62 132659.5 63 115173.0 64 100148.0 65 85123.0 66 72075.0 67 59027.0 68 59027.0 69 50535.5 70 42044.0 71 35120.5 72 28197.0 73 22929.0 74 17661.0 75 17661.0 76 14120.5 77 10580.0 78 8263.5 79 5947.0 80 4657.5 81 3368.0 82 3368.0 83 2532.0 84 1696.0 85 1279.5 86 863.0 87 674.0 88 485.0 89 485.0 90 373.5 91 262.0 92 184.5 93 107.0 94 69.5 95 32.0 96 32.0 97 20.5 98 9.0 99 7.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4808429.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.768234692781355 #Duplication Level Percentage of deduplicated Percentage of total 1 74.28559026721703 28.056356075040473 2 12.965608402961712 9.79376282195512 3 4.852225535704878 5.497799784444258 4 2.3816651546109866 3.5980515407586857 5 1.3197778805373075 2.492284036723729 6 0.778461564011783 1.7640671429343995 7 0.5460686999423846 1.4436835572464188 8 0.4048675152728185 1.2232905069045639 9 0.29316827699479586 0.9965203461016003 >10 1.8119229130315895 13.299711400222597 >50 0.20217803949822197 5.320792721291383 >100 0.14025940014725338 9.886402207925485 >500 0.01084633627580772 2.7915978165327444 >1k 0.00603189100358393 4.827229710131025 >5k 7.747382940383025E-4 1.967663969537613 >10k+ 5.533844957416445E-4 7.040786362249868 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 87714 1.824171678525356 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 64166 1.334448319815058 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 64151 1.3341363676161173 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27426 0.570373400543088 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 18181 0.37810686192933285 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 17831 0.3708279772873843 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 16759 0.34853379346975905 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 13978 0.29069785578616214 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 13750 0.2859561823622643 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12918 0.26865323372768946 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 9863 0.20511896921011 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 9101 0.18927179750392487 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 8479 0.17633617965451917 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7928 0.16487713554676592 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7926 0.16483554192024047 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 6305 0.13112390762138737 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6221 0.1293769753073197 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 6063 0.1260910788118115 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6020 0.12519681584151496 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5413 0.11257315019104994 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5388 0.11205322985948217 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 5207 0.10828900665893162 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 5180 0.10772749270083845 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5051 0.10504470378994886 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 2.0796813262710128E-5 0.0 0.0 0.0 0.0 9 4.1593626525420255E-5 0.0 0.0 2.0796813262710128E-5 0.0 10 8.318725305084051E-5 0.0 0.0 8.318725305084051E-5 0.0 11 8.318725305084051E-5 0.0 0.0 2.4956175915252153E-4 0.0 12 8.318725305084051E-5 0.0 0.0 4.1593626525420255E-4 0.0 13 8.318725305084051E-5 0.0 0.0 4.367330785169127E-4 0.0 14 1.0398406631355064E-4 0.0 0.0 4.7832670504233295E-4 0.0 15 1.0398406631355064E-4 0.0 0.0 6.44701211144014E-4 0.0 16 1.2478087957626077E-4 0.0 0.0 0.0010814342896609266 0.0 17 1.2478087957626077E-4 0.0 0.0 0.0017053386875422304 0.0 18 1.2478087957626077E-4 0.0 0.0 0.0020796813262710127 0.0 19 1.6637450610168102E-4 0.0 0.0 0.0032858964955082004 0.0 20 1.6637450610168102E-4 0.0 0.0 0.0055735459544063145 0.0 21 1.8717131936439116E-4 0.0 0.0 0.011001514215973658 8.318725305084051E-5 22 1.8717131936439116E-4 0.0 0.0 0.018384382924235755 8.318725305084051E-5 23 2.0796813262710128E-4 0.0 0.0 0.022502151950252357 8.318725305084051E-5 24 2.0796813262710128E-4 0.0 0.0 0.03028016011050595 8.318725305084051E-5 25 2.2876494588981142E-4 0.0 0.0 0.03527139529355638 8.318725305084051E-5 26 2.2876494588981142E-4 0.0 0.0 0.04423482180978444 8.318725305084051E-5 27 2.2876494588981142E-4 0.0 0.0 0.08308326898452696 8.318725305084051E-5 28 2.2876494588981142E-4 0.0 0.0 0.18814876958773852 8.318725305084051E-5 29 2.4956175915252153E-4 0.0 0.0 0.3468492515954795 8.318725305084051E-5 30 3.119521989406519E-4 0.0 0.0 0.5604117269902499 8.318725305084051E-5 31 3.119521989406519E-4 0.0 0.0 0.8428948415376415 8.318725305084051E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTGG 2025 0.0 21.560492 1 GGTATCA 22805 0.0 21.270336 1 TATAGCG 50 0.00703806 18.5 5 ATTGGAC 2380 0.0 18.189075 3 TTGGACC 3095 0.0 17.573507 4 TGGACCC 3220 0.0 16.48913 5 GGACCCT 3155 0.0 16.47702 6 TATTGGA 2585 0.0 16.245647 2 ACCGTTA 285 0.0 15.578948 8 CGGTATA 205 5.456968E-12 15.341463 28 CGTTTAT 300 0.0 14.8 1 GACCCTC 3590 0.0 14.171309 7 TTTTTAC 3435 0.0 14.056768 1 GACGTAT 265 0.0 13.962264 28 ATCGTAC 120 3.304657E-5 13.874999 25 TCTATAC 375 0.0 13.813334 3 TCTAACG 255 1.8189894E-12 13.784313 2 GTATCAA 35160 0.0 13.775029 2 CTCTAAT 730 0.0 13.684932 1 GATACTG 1985 0.0 13.513854 36 >>END_MODULE