##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088557_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4575011 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.79924288706628 31.0 31.0 34.0 30.0 34.0 2 31.941043857599468 31.0 31.0 34.0 30.0 34.0 3 32.06344050320316 33.0 31.0 34.0 30.0 34.0 4 35.70733250696009 37.0 35.0 37.0 35.0 37.0 5 35.64552850255442 37.0 35.0 37.0 33.0 37.0 6 35.71071566822462 37.0 35.0 37.0 33.0 37.0 7 35.56302247142138 37.0 35.0 37.0 33.0 37.0 8 35.611997872792 37.0 35.0 37.0 33.0 37.0 9 37.222807333140835 39.0 37.0 39.0 34.0 39.0 10 37.09046950925364 39.0 37.0 39.0 33.0 39.0 11 37.15730344692067 39.0 37.0 39.0 33.0 39.0 12 37.01299384853938 39.0 37.0 39.0 33.0 39.0 13 37.06911546223605 39.0 37.0 39.0 33.0 39.0 14 38.08532831942918 40.0 37.0 41.0 33.0 41.0 15 38.09453704045739 40.0 37.0 41.0 33.0 41.0 16 37.99012832974609 40.0 37.0 41.0 33.0 41.0 17 38.04770524049013 40.0 37.0 41.0 33.0 41.0 18 38.0289931543334 40.0 37.0 41.0 33.0 41.0 19 38.0984391075781 40.0 37.0 41.0 33.0 41.0 20 38.01180565467493 40.0 37.0 41.0 33.0 41.0 21 37.87887329669808 40.0 37.0 41.0 32.0 41.0 22 37.76125631173346 40.0 37.0 41.0 32.0 41.0 23 37.585685804908444 40.0 36.0 41.0 32.0 41.0 24 37.73113856994005 40.0 37.0 41.0 32.0 41.0 25 37.67183029723863 40.0 37.0 41.0 32.0 41.0 26 37.47116979609448 39.0 36.0 41.0 32.0 41.0 27 37.431343225185685 39.0 36.0 41.0 32.0 41.0 28 37.28173003299883 39.0 36.0 41.0 31.0 41.0 29 37.06536115432291 39.0 36.0 41.0 31.0 41.0 30 36.89675871817576 39.0 35.0 41.0 31.0 41.0 31 36.613254044635084 39.0 35.0 40.0 30.0 41.0 32 36.445304940250416 38.0 35.0 40.0 30.0 41.0 33 36.26034910079998 38.0 35.0 40.0 30.0 41.0 34 36.05581254340154 38.0 35.0 40.0 30.0 41.0 35 35.83531689869161 38.0 35.0 40.0 29.0 41.0 36 35.738878223462194 38.0 35.0 40.0 27.0 41.0 37 35.5726069292511 38.0 35.0 40.0 27.0 41.0 38 35.419096260096424 38.0 35.0 40.0 26.0 41.0 39 35.26431433716771 38.0 34.0 40.0 25.0 41.0 40 35.05629647666421 38.0 34.0 40.0 24.0 41.0 41 34.87763089531369 38.0 34.0 40.0 23.0 41.0 42 34.56121438833699 38.0 33.0 40.0 22.0 41.0 43 34.15883546509506 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 3.0 12 7.0 13 13.0 14 17.0 15 28.0 16 52.0 17 122.0 18 279.0 19 664.0 20 1446.0 21 2796.0 22 5259.0 23 9122.0 24 15126.0 25 23260.0 26 34705.0 27 49442.0 28 67672.0 29 88886.0 30 112542.0 31 138824.0 32 171072.0 33 212083.0 34 267509.0 35 333241.0 36 445587.0 37 672714.0 38 864291.0 39 1058245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.428663013050674 20.69706499066341 14.504030700691212 22.3702412955947 2 18.343300158185414 24.084860123833582 35.5444391281245 22.027400589856505 3 19.49175641326327 24.55183167865607 33.58149302810419 22.374918879976462 4 12.927772195520404 16.03185216385272 36.65752934801687 34.38284629261001 5 12.253456876934285 39.19535931170439 34.65703142571679 13.894152385644537 6 31.661606933841252 38.00137311145263 13.399552481950316 16.937467472755806 7 25.478146391342012 34.03937170861447 21.216473577877736 19.266008322165785 8 27.938796212730416 33.925557774615186 18.73425003786876 19.401395974785636 9 24.64262927455256 14.459615506935394 22.01745525857752 38.880299959934526 10 16.63766491490403 28.098205665516435 32.56223864816937 22.701890771410167 11 32.852336311322524 22.937627909528523 23.543724812902088 20.666310966246858 12 21.63409006011133 27.954971037228106 30.704647486093478 19.706291416567087 13 32.161299721465156 20.875578222653456 26.30596953755958 20.657152518321816 14 20.37693461283481 23.05657844319937 29.022465738333743 27.544021205632074 15 22.554437574029876 30.009720195208274 25.961183481307476 21.474658749454374 16 21.170156749349893 28.31105761275765 27.02609895364186 23.492686684250597 17 21.296211091077158 26.979913272339672 27.641310589198582 24.082565047384584 18 22.612645084350618 25.341141256272387 30.53972984982987 21.506483809547124 19 22.381891540807224 24.639853324942827 32.21218484502004 20.76607028922991 20 23.3105231878131 24.408028745723236 31.494372363257707 20.78707570320596 21 21.943597512661718 25.352572922775487 32.28689504790262 20.416934516660177 22 20.639032343310213 25.97475721916297 31.70827348830418 21.677936949222637 23 21.734832987286808 25.976768143289707 32.332075267141434 19.95632360228205 24 21.310134554867737 26.203456122837736 30.348823205015247 22.13758611727928 25 21.42539110834925 26.12614483331297 31.543115415460203 20.90534864287758 26 20.87997165471296 27.28019670335219 31.460623810521987 20.379207831412867 27 19.895711726157597 27.202710550859877 31.175793894266047 21.725783828716477 28 20.4779398344616 26.86944359259464 31.15483219603188 21.49778437691188 29 20.727731583596192 26.941552708835015 30.402855861985906 21.927859845582883 30 20.5904860119462 27.2541202633174 32.11806485274025 20.037328871996156 31 21.48276801957416 26.9705362457052 31.746502904583178 19.80019283013746 32 20.852015437777087 26.855716849642548 30.76047248848145 21.531795224098914 33 20.435251412510265 26.83005570915567 31.519443341229124 21.21524953710494 34 19.81315454760655 27.330098222714653 32.00744216789862 20.84930506178018 35 19.366882396566915 29.49147007515392 30.791904106897228 20.349743421381937 36 21.615226717487673 27.24824049603378 30.57395927572633 20.562573510752213 37 20.56060630236736 27.887670652595155 30.588844485838397 20.96287855919909 38 20.27437748237108 26.468395376535707 31.85813105148818 21.39909608960503 39 19.778007091130494 26.30559795375355 32.58916754517093 21.327227409945028 40 18.695955047976934 26.713902982965504 32.41970347175121 22.170438497306343 41 19.988979261470625 25.681883606400074 32.60171396309211 21.727423169037188 42 18.916850691725113 27.54942009975495 31.72847016105535 21.805259047464585 43 18.94646810685264 27.283191231671356 31.311028541789298 22.459312119686707 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1130.0 1 1171.0 2 1212.0 3 3400.0 4 5588.0 5 5588.0 6 8519.5 7 11451.0 8 12175.0 9 12899.0 10 19241.5 11 25584.0 12 25584.0 13 46366.0 14 67148.0 15 113964.0 16 160780.0 17 144350.5 18 127921.0 19 127921.0 20 127908.5 21 127896.0 22 97796.0 23 67696.0 24 74754.5 25 81813.0 26 81813.0 27 89694.0 28 97575.0 29 103882.0 30 110189.0 31 119178.0 32 128167.0 33 128167.0 34 142535.0 35 156903.0 36 174386.0 37 191869.0 38 202855.5 39 213842.0 40 213842.0 41 223124.0 42 232406.0 43 250891.5 44 269377.0 45 287658.0 46 305939.0 47 305939.0 48 395772.0 49 485605.0 50 454826.5 51 424048.0 52 382264.0 53 340480.0 54 340480.0 55 301349.5 56 262219.0 57 223176.0 58 184133.0 59 163434.5 60 142736.0 61 142736.0 62 125165.5 63 107595.0 64 92495.0 65 77395.0 66 65360.5 67 53326.0 68 53326.0 69 45622.5 70 37919.0 71 31757.0 72 25595.0 73 20715.5 74 15836.0 75 15836.0 76 12579.5 77 9323.0 78 7310.0 79 5297.0 80 4101.0 81 2905.0 82 2905.0 83 2197.0 84 1489.0 85 1142.5 86 796.0 87 624.0 88 452.0 89 452.0 90 376.5 91 301.0 92 202.0 93 103.0 94 76.5 95 50.0 96 50.0 97 31.0 98 12.0 99 11.5 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4575011.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.65097492753248 #Duplication Level Percentage of deduplicated Percentage of total 1 74.63831845719959 28.848437753224054 2 12.865364207860452 9.94517738863176 3 4.71628600974973 5.46867156941727 4 2.2991763579897246 3.554616310665451 5 1.264992529477209 2.4446597270169743 6 0.7985924936150536 1.8519827068818644 7 0.5391033563468185 1.4585809216656642 8 0.39216634965527897 1.2126089398358497 9 0.28846437528526325 1.0034486402973326 >10 1.8573273423298045 13.891974457400465 >50 0.19063029165506665 5.1221508511179366 >100 0.13119743916663212 9.46707140007475 >500 0.011175974006499988 2.8952656228768463 >1k 0.006240391519012356 5.034553346515592 >5k 3.9711582393714987E-4 1.046554720828565 >10k+ 5.673083199102141E-4 6.754245643549736 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 87252 1.9071429555032764 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 61733 1.3493519469133517 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 61106 1.335647061832201 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26511 0.5794740165652061 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 13559 0.29637087211375013 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13433 0.2936167803749543 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12016 0.2626441772489727 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11228 0.24542017494602747 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11019 0.24085187991897727 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10176 0.22242569471417664 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 8710 0.19038205591199672 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7776 0.16996680445139914 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 7455 0.16295042787875264 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6937 0.15162805073036983 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5906 0.1290925857883183 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5886 0.12865542836946184 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5059 0.11057896909974643 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4776 0.10439319162292725 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4610 0.10076478504641848 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1857870942823962E-5 2 2.1857870942823962E-5 0.0 0.0 0.0 2.1857870942823962E-5 3 2.1857870942823962E-5 0.0 0.0 0.0 2.1857870942823962E-5 4 2.1857870942823962E-5 0.0 0.0 0.0 2.1857870942823962E-5 5 2.1857870942823962E-5 0.0 0.0 0.0 2.1857870942823962E-5 6 4.3715741885647923E-5 0.0 0.0 0.0 2.1857870942823962E-5 7 4.3715741885647923E-5 0.0 0.0 2.1857870942823962E-5 2.1857870942823962E-5 8 4.3715741885647923E-5 0.0 0.0 4.3715741885647923E-5 2.1857870942823962E-5 9 6.557361282847189E-5 0.0 0.0 1.0928935471411982E-4 2.1857870942823962E-5 10 8.743148377129585E-5 0.0 0.0 1.748629675425917E-4 2.1857870942823962E-5 11 8.743148377129585E-5 0.0 0.0 2.1857870942823963E-4 2.1857870942823962E-5 12 8.743148377129585E-5 0.0 0.0 5.464467735705991E-4 2.1857870942823962E-5 13 8.743148377129585E-5 0.0 0.0 5.68304644513423E-4 2.1857870942823962E-5 14 8.743148377129585E-5 0.0 0.0 7.213097411131907E-4 2.1857870942823962E-5 15 8.743148377129585E-5 0.0 0.0 9.836041924270783E-4 2.1857870942823962E-5 16 8.743148377129585E-5 0.0 0.0 0.0014207616112835576 2.1857870942823962E-5 17 1.0928935471411982E-4 0.0 0.0 0.0020546398686254524 2.1857870942823962E-5 18 1.3114722565694378E-4 0.0 0.0 0.0025355130293675796 2.1857870942823962E-5 19 1.3114722565694378E-4 0.0 0.0 0.0032786806414235943 2.1857870942823962E-5 20 1.3114722565694378E-4 0.0 0.0 0.00590162515456247 2.1857870942823962E-5 21 1.5300509659976774E-4 0.0 0.0 0.010775930374812214 2.1857870942823962E-5 22 1.748629675425917E-4 0.0 0.0 0.018775911139885783 4.3715741885647923E-5 23 1.748629675425917E-4 0.0 0.0 0.022907048748079514 4.3715741885647923E-5 24 1.748629675425917E-4 0.0 0.0 0.029639272998469295 1.3114722565694378E-4 25 1.748629675425917E-4 0.0 0.0 0.03468844118626163 1.3114722565694378E-4 26 1.748629675425917E-4 0.0 0.0 0.042732137693220845 1.3114722565694378E-4 27 1.748629675425917E-4 0.0 0.0 0.08789049906109515 1.3114722565694378E-4 28 1.9672083848541568E-4 0.0 0.0 0.2033219155101485 1.3114722565694378E-4 29 1.9672083848541568E-4 0.0 0.0 0.3835400614337321 1.3114722565694378E-4 30 1.9672083848541568E-4 0.0 0.0 0.614009452654868 1.3114722565694378E-4 31 1.9672083848541568E-4 0.0 0.0 0.9340086832578107 1.3114722565694378E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23170 0.0 19.60984 1 GTATTGG 1865 0.0 18.74799 1 ATTGGAC 2015 0.0 17.260546 3 TTGGACC 2700 0.0 16.855556 4 GGACCCT 2540 0.0 16.824802 6 TGGACCC 2630 0.0 16.811787 5 ACGGACC 135 2.2240783E-8 16.444445 27 TATACCG 270 0.0 15.759259 5 TAATACT 985 0.0 15.588833 4 CTCTAAT 800 0.0 15.031251 1 GACCCTC 2850 0.0 14.799999 7 TCGGGTA 290 0.0 14.672414 25 TAGTACT 735 0.0 14.346938 4 TACTGGT 920 0.0 14.277174 7 TATACAC 2385 0.0 14.272537 37 AACGGAC 130 4.450647E-6 14.23077 26 TATTGGA 2460 0.0 14.213414 2 CTAATAC 1035 0.0 14.120773 3 TTATGCG 370 0.0 14.0 4 CGACGAA 555 0.0 13.666668 10 >>END_MODULE