##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088554_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1782791 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.702400337448417 31.0 31.0 34.0 30.0 34.0 2 31.851198485969473 31.0 31.0 34.0 30.0 34.0 3 31.975351008615142 33.0 31.0 34.0 30.0 34.0 4 35.64528876351743 37.0 35.0 37.0 33.0 37.0 5 35.56216124043704 37.0 35.0 37.0 33.0 37.0 6 35.61792380598735 37.0 35.0 37.0 33.0 37.0 7 35.46312327132008 37.0 35.0 37.0 33.0 37.0 8 35.51175488321402 37.0 35.0 37.0 33.0 37.0 9 37.10141906706956 39.0 37.0 39.0 33.0 39.0 10 36.9666657505002 39.0 37.0 39.0 33.0 39.0 11 37.03232459665771 39.0 37.0 39.0 33.0 39.0 12 36.87597424487784 39.0 37.0 39.0 32.0 39.0 13 36.93048035355799 39.0 37.0 39.0 33.0 39.0 14 37.916118602797525 40.0 37.0 41.0 33.0 41.0 15 37.933746580502145 40.0 37.0 41.0 33.0 41.0 16 37.82376677916817 40.0 37.0 41.0 32.0 41.0 17 37.87566798351573 40.0 37.0 41.0 33.0 41.0 18 37.856920412992885 40.0 37.0 41.0 32.0 41.0 19 37.927291533331726 40.0 37.0 41.0 32.0 41.0 20 37.83495429357676 40.0 37.0 41.0 32.0 41.0 21 37.69719838163868 40.0 37.0 41.0 32.0 41.0 22 37.58354568763248 39.0 37.0 41.0 32.0 41.0 23 37.39518990167664 39.0 36.0 41.0 31.0 41.0 24 37.54297054450017 39.0 36.0 41.0 32.0 41.0 25 37.48135255338399 39.0 36.0 41.0 32.0 41.0 26 37.26156571353569 39.0 36.0 41.0 31.0 41.0 27 37.218480461254295 39.0 36.0 41.0 31.0 41.0 28 37.052100891243 39.0 36.0 41.0 31.0 41.0 29 36.82681817442426 39.0 35.0 41.0 30.0 41.0 30 36.66833969882056 39.0 35.0 40.0 30.0 41.0 31 36.383950782789455 38.0 35.0 40.0 30.0 41.0 32 36.21229465484176 38.0 35.0 40.0 30.0 41.0 33 36.02810144318656 38.0 35.0 40.0 30.0 41.0 34 35.82157975892856 38.0 35.0 40.0 29.0 41.0 35 35.61349703919304 38.0 35.0 40.0 27.0 41.0 36 35.52209204556227 38.0 35.0 40.0 27.0 41.0 37 35.34991145905493 38.0 34.0 40.0 26.0 41.0 38 35.198526355585145 38.0 34.0 40.0 25.0 41.0 39 35.04488243434031 38.0 34.0 40.0 24.0 41.0 40 34.83880443641459 38.0 34.0 40.0 24.0 41.0 41 34.68272444722909 38.0 33.0 40.0 23.0 41.0 42 34.36759104123815 38.0 33.0 40.0 21.0 41.0 43 33.96040309828802 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 1.0 13 3.0 14 4.0 15 6.0 16 17.0 17 48.0 18 123.0 19 275.0 20 700.0 21 1243.0 22 2444.0 23 4227.0 24 6705.0 25 10585.0 26 15540.0 27 21482.0 28 29391.0 29 38677.0 30 47303.0 31 58060.0 32 70232.0 33 86925.0 34 107494.0 35 132521.0 36 174894.0 37 256278.0 38 328246.0 39 389363.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.72508162762769 20.99578694305726 14.780924965405367 22.49820646390968 2 18.42459379702949 24.131095568689766 35.43331775850338 22.01099287577736 3 19.38494192532944 24.555093670542423 33.42825939776451 22.631705006363617 4 13.283441525114274 16.295235953064605 36.33634004210252 34.0849824797186 5 12.189146119763898 39.15332756335431 34.67361008665626 13.98391623022553 6 31.753918434634233 38.21479915480839 13.457101813953514 16.574180596603863 7 25.08684416737576 34.23026030533024 21.312593568174844 19.370301959119157 8 27.594934010773 34.40880058290624 18.86121255940825 19.135052846912508 9 24.665706748575687 14.549938831865317 21.968250905462277 38.81610351409672 10 16.493576644710455 28.438835511285394 32.509194852341075 22.558392991663073 11 32.96925999738612 23.127108000881762 23.229812131652 20.673819870080116 12 21.34164913329717 28.23174449500811 30.676282301178322 19.7503240705164 13 31.9397506494031 21.37995984947198 25.999233785676505 20.68105571544842 14 20.256777154472957 23.280743508352913 28.93541643411931 27.527062903054816 15 22.452996453313933 30.37125495921844 25.75949732750502 21.41625125996261 16 21.079139394354133 28.691753548228593 26.83573116534692 23.393375892070356 17 21.33906890936739 27.286428975690363 27.614061322948118 23.760440791994125 18 22.530571446681076 25.785299566802838 30.309273493079107 21.374855493436975 19 22.400382321876204 25.16408260979554 31.916753001333305 20.51878206699495 20 23.136138784636 25.005567113587627 31.17084391832806 20.687450183448313 21 21.784101445430228 25.862145366450694 31.89420408785999 20.45954910025909 22 20.70713841386904 26.36680351202132 31.31471944832569 21.611338625783954 23 21.59114556894218 26.19600390623466 31.9684135717535 20.244436953069652 24 21.363861495823123 26.50456503314185 30.21318819760701 21.91838527342801 25 21.386298225647312 26.448304933107696 31.262666235133562 20.902730606111426 26 20.821790103270658 27.59796296929926 31.13315021222342 20.447096715206662 27 20.032465948055606 27.399397910355166 30.89896684468342 21.669169296905807 28 20.513845986433633 27.17934968260441 30.900144772999187 21.40665955796277 29 20.58766282755522 27.08433013179896 30.2096544126597 22.11835262798612 30 20.71314023909701 27.35424399158398 31.870252878772664 20.06236289054634 31 21.44009028540081 27.049441016922344 31.517267026813574 19.99320167086327 32 20.767437125271552 27.04175643695756 30.675384831985355 21.515421605785534 33 20.46465345629409 26.796859530926508 31.41175830481531 21.326728707964087 34 19.736693757148203 27.12987669334207 32.09669557452332 21.03673397498641 35 19.367048633294647 28.905126848856654 30.994771681032717 20.733052836815983 36 21.367002637998507 26.927777849450663 30.832834583526612 20.87238492902421 37 20.485239155907784 27.5277920967741 30.795757887492144 21.191210859825972 38 20.19143017886 26.117587535499116 32.0291610177525 21.661821267888385 39 19.60639244869421 25.959689049361366 32.88972179015936 21.54419671178506 40 18.673585406253455 26.213785014620335 32.820560570476296 22.29206900864992 41 19.687725594306904 25.434052561405124 32.93846558570242 21.939756258585554 42 18.8221165576896 27.149060097341753 32.118571386101905 21.910251958866745 43 18.728891945270085 27.047870445834647 31.62529988091706 22.59793772797821 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 701.0 1 617.0 2 533.0 3 1314.0 4 2095.0 5 2095.0 6 3194.5 7 4294.0 8 4611.0 9 4928.0 10 7453.5 11 9979.0 12 9979.0 13 17926.5 14 25874.0 15 43933.5 16 61993.0 17 55448.0 18 48903.0 19 48903.0 20 48859.5 21 48816.0 22 38209.5 23 27603.0 24 30246.0 25 32889.0 26 32889.0 27 36068.0 28 39247.0 29 42015.0 30 44783.0 31 48601.0 32 52419.0 33 52419.0 34 58329.5 35 64240.0 36 70526.5 37 76813.0 38 81382.0 39 85951.0 40 85951.0 41 89553.0 42 93155.0 43 98870.0 44 104585.0 45 111486.5 46 118388.0 47 118388.0 48 151867.0 49 185346.0 50 171219.0 51 157092.0 52 141325.5 53 125559.0 54 125559.0 55 112537.5 56 99516.0 57 85859.0 58 72202.0 59 64454.5 60 56707.0 61 56707.0 62 49555.0 63 42403.0 64 37109.0 65 31815.0 66 27112.5 67 22410.0 68 22410.0 69 19047.0 70 15684.0 71 13179.5 72 10675.0 73 8616.5 74 6558.0 75 6558.0 76 5265.0 77 3972.0 78 3073.5 79 2175.0 80 1692.5 81 1210.0 82 1210.0 83 920.0 84 630.0 85 471.5 86 313.0 87 239.5 88 166.0 89 166.0 90 136.0 91 106.0 92 71.5 93 37.0 94 27.0 95 17.0 96 17.0 97 12.5 98 8.0 99 4.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1782791.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.88075962971204 #Duplication Level Percentage of deduplicated Percentage of total 1 81.19925284545069 41.31479666141587 2 10.35491822780302 10.537322106683384 3 3.3273307598933632 5.078913498080439 4 1.4763434936330095 3.004699137217218 5 0.786076713317097 1.9998090150400636 6 0.550747834716766 1.6813480916884886 7 0.3625402612275331 1.2912426721327783 8 0.2680139781092666 1.0909403838064398 9 0.21684832406003285 0.9930066707343989 >10 1.2777209430512235 12.168582999940448 >50 0.10821388146938354 3.8197034716748757 >100 0.062482479777313166 5.952865928260369 >500 0.004533959966781449 1.6222101599200307 >1k 0.004423375577347755 4.226433913578894 >5k 2.2116877886738776E-4 0.8259874838758992 >10k+ 3.3175316830108163E-4 4.392137805950456 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32754 1.8372316216539124 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22726 1.274742804961434 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22580 1.2665533985756043 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9552 0.5357891082016905 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5128 0.28763887634613367 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4222 0.23681968329434017 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4203 0.23575393862769106 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4181 0.23451991848736056 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3727 0.2090542301369033 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3558 0.19957471178618244 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3491 0.1958165595406304 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3004 0.16849984097967735 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2733 0.1532989565237877 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2069 0.11605398501563 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2064 0.11577352589282759 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2006 0.11252020006831984 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1984 0.11128617992798931 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1851 0.10382596726144566 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.6827547368143545E-4 0.0 10 0.0 0.0 0.0 1.6827547368143545E-4 0.0 11 0.0 0.0 0.0 3.926427719233494E-4 0.0 12 0.0 0.0 0.0 6.170100701652633E-4 0.0 13 0.0 0.0 0.0 8.413773684071773E-4 0.0 14 5.6091824560478485E-5 0.0 0.0 0.0011218364912095697 0.0 15 5.6091824560478485E-5 0.0 0.0 0.0014022956140119622 0.0 16 5.6091824560478485E-5 0.0 0.0 0.002411948456100575 0.0 17 5.6091824560478485E-5 0.0 0.0 0.003814244070112537 0.0 18 5.6091824560478485E-5 0.0 0.0 0.004767805087640672 0.0 19 5.6091824560478485E-5 0.0 0.0 0.006282284350773591 0.0 20 5.6091824560478485E-5 0.0 0.0 0.009759977473523257 0.0 21 5.6091824560478485E-5 0.0 0.0 0.01626662912253876 0.0 22 5.6091824560478485E-5 0.0 0.0 0.026755800315348237 0.0 23 5.6091824560478485E-5 0.0 0.0 0.032084523648593696 0.0 24 5.6091824560478485E-5 0.0 0.0 0.04234932754316126 0.0 25 5.6091824560478485E-5 0.0 0.0 0.04846333642025341 0.0 26 5.6091824560478485E-5 0.0 0.0 0.05878423213938145 0.0 27 5.6091824560478485E-5 0.0 0.0 0.11515651582266233 0.0 28 5.6091824560478485E-5 0.0 0.0 0.25779802567995913 0.0 29 5.6091824560478485E-5 0.0 0.0 0.4807630283078611 0.0 30 1.1218364912095697E-4 0.0 0.0 0.7811908406537839 0.0 31 1.1218364912095697E-4 0.0 0.0 1.2003650455942396 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGA 45 1.3236121E-4 24.666666 5 TATACCG 130 1.8189894E-12 21.346153 5 GGTATCA 8140 0.0 20.431818 1 GTATTGG 580 0.0 19.137932 1 CATTACG 60 9.239535E-4 18.5 4 ATTGGAC 625 0.0 17.168 3 ACCGTTA 110 7.813542E-7 16.818182 8 GGACCCT 815 0.0 16.57055 6 TTAGACG 80 3.3838736E-4 16.1875 15 CCGACCG 150 4.6748028E-9 16.033333 9 TTGGACC 885 0.0 15.887005 4 TTACGAT 70 0.002593245 15.857143 6 TGGACCC 875 0.0 15.645715 5 GACCGTT 145 5.3503754E-8 15.310346 7 CGGTATA 115 2.2110838E-5 14.478261 26 TAGACGT 90 8.277169E-4 14.388888 16 TTATGCG 155 1.2111741E-7 14.32258 4 TATACGC 105 1.6564388E-4 14.095238 3 CCGTTTA 105 1.6564388E-4 14.095238 27 ACACCCG 160 1.7848652E-7 13.875 5 >>END_MODULE