##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088553_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3204450 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.733892555664777 31.0 31.0 34.0 30.0 34.0 2 31.888758757353056 31.0 31.0 34.0 30.0 34.0 3 32.018592582190394 33.0 31.0 34.0 30.0 34.0 4 35.6882088970026 37.0 35.0 37.0 35.0 37.0 5 35.59431259654543 37.0 35.0 37.0 33.0 37.0 6 35.635852954485166 37.0 35.0 37.0 33.0 37.0 7 35.49579709466523 37.0 35.0 37.0 33.0 37.0 8 35.53001357487244 37.0 35.0 37.0 33.0 37.0 9 37.142996458050526 39.0 37.0 39.0 33.0 39.0 10 36.99796439326561 39.0 37.0 39.0 33.0 39.0 11 37.05726942220974 39.0 37.0 39.0 33.0 39.0 12 36.913112390581844 39.0 37.0 39.0 33.0 39.0 13 36.965008347766386 39.0 37.0 39.0 33.0 39.0 14 38.01342851347345 40.0 37.0 41.0 33.0 41.0 15 38.021731654418076 40.0 37.0 41.0 33.0 41.0 16 37.91820187551686 40.0 37.0 41.0 33.0 41.0 17 37.9318382249684 40.0 37.0 41.0 33.0 41.0 18 37.897742202249994 40.0 37.0 41.0 33.0 41.0 19 37.95813790198006 40.0 37.0 41.0 33.0 41.0 20 37.86098862519309 40.0 37.0 41.0 32.0 41.0 21 37.71693207882788 40.0 37.0 41.0 32.0 41.0 22 37.602696874658676 39.0 37.0 41.0 32.0 41.0 23 37.43284120519902 39.0 36.0 41.0 32.0 41.0 24 37.58496528265381 39.0 37.0 41.0 32.0 41.0 25 37.53117758117617 39.0 36.0 41.0 32.0 41.0 26 37.33049914962006 39.0 36.0 41.0 31.0 41.0 27 37.28853282154504 39.0 36.0 41.0 31.0 41.0 28 37.14311129835073 39.0 36.0 41.0 31.0 41.0 29 36.93498072992245 39.0 36.0 41.0 30.0 41.0 30 36.81562202562062 39.0 35.0 41.0 30.0 41.0 31 36.58412644915664 39.0 35.0 40.0 30.0 41.0 32 36.424909110767835 39.0 35.0 40.0 30.0 41.0 33 36.26572297898235 38.0 35.0 40.0 30.0 41.0 34 36.080114528234176 38.0 35.0 40.0 29.0 41.0 35 35.89329588540935 38.0 35.0 40.0 28.0 41.0 36 35.832069153832954 38.0 35.0 40.0 28.0 41.0 37 35.69975783675826 38.0 35.0 40.0 27.0 41.0 38 35.569903415562734 38.0 35.0 40.0 26.0 41.0 39 35.453734026119925 38.0 35.0 40.0 26.0 41.0 40 35.2917140226872 38.0 34.0 40.0 25.0 41.0 41 35.17763360327045 38.0 34.0 40.0 24.0 41.0 42 34.91795659161478 38.0 34.0 40.0 23.0 41.0 43 34.53862035606734 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 5.0 13 4.0 14 6.0 15 13.0 16 32.0 17 88.0 18 218.0 19 475.0 20 1041.0 21 2088.0 22 4017.0 23 6978.0 24 11061.0 25 17074.0 26 25216.0 27 35731.0 28 48716.0 29 63732.0 30 81243.0 31 99870.0 32 122622.0 33 150883.0 34 187224.0 35 233290.0 36 305621.0 37 442089.0 38 605687.0 39 759425.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5597996536067 20.9541731030286 14.19806831125466 23.287958932110033 2 18.294184649471827 23.50219226388304 35.63460188175818 22.569021204886955 3 19.17383638377881 24.586528109347938 32.8203903946075 23.419245112265756 4 13.446987782614803 16.496590678587587 36.54570987220896 33.51071166658865 5 12.608559971289926 38.74948899187068 34.84470033859164 13.797250698247748 6 31.953470954453962 38.12950740376664 14.178564184181372 15.73845745759803 7 25.80767370375571 33.48137745947042 21.7666058137902 18.944343022983663 8 26.99826803351589 34.84685359422054 19.239245424331788 18.915632947931783 9 24.92318494593456 14.624724991808266 21.569598527048324 38.88249153520885 10 16.27936151289613 28.225967014620295 33.168624881024826 22.326046591458752 11 33.5616096365991 22.922623227074848 23.180202530855528 20.33556460547052 12 21.16366303109738 27.595812073834825 30.93457535614536 20.305949538922434 13 31.252820296774797 21.253413222237825 25.981026385183103 21.512740095804272 14 20.53569255254412 22.62572360311442 28.335190126230707 28.503393718110754 15 22.85864969027446 30.00486823011749 25.16434957637036 21.972132503237685 16 21.81616189985801 28.36299520978639 26.40846323081964 23.412379659535958 17 21.664092121892992 27.333083680506796 27.419588384902244 23.583235812697968 18 22.56337280968653 26.106414517311865 29.611290549080188 21.718922123921423 19 22.77807424050929 25.398586340869727 30.76409368222316 21.059245736397823 20 23.316544180748647 25.358017756557288 30.107163475791477 21.218274586902588 21 22.275055001638346 26.01535364883209 30.59039772815928 21.119193621370282 22 21.445895551498698 26.433054034233646 30.15578336375977 21.965267050507887 23 22.033110206119616 26.35129273354242 30.744589555149872 20.871007505188096 24 21.930222034982602 26.437859851144502 29.272574076674623 22.35934403719827 25 21.995662282138902 26.37607077657632 30.12545054533539 21.502816395949385 26 21.44870414579725 27.26068436081075 30.1520385713617 21.138572922030303 27 20.86632651469051 27.184290595890094 29.83463620902183 22.114746680397573 28 21.13208194854031 27.01096912106602 29.954063879916994 21.90288505047668 29 21.433943422428186 26.918535162040286 29.42841985364103 22.219101561890493 30 21.41440808875158 27.086177035060622 30.59361200830096 20.905802867886845 31 21.85538860022781 26.873535240056796 30.405935495950942 20.865140663764453 32 21.248763438343556 26.91107678384746 29.740048994367207 22.100110783441774 33 21.14830938226529 26.590148075332742 30.426563060743657 21.83497948165832 34 20.738192201469833 26.71497448860179 30.93432570331882 21.612507606609558 35 20.49659067858759 28.068186428248215 30.03105057030068 21.40417232286352 36 21.94061383388725 26.496746711604175 29.980277426703488 21.582362027805083 37 21.015774937976875 26.880806378629718 30.10550952581566 21.997909157577745 38 20.7847836602225 25.815381734775077 31.20011234377194 22.199722261230477 39 20.334347547941146 25.66949086426688 31.867933654761348 22.12822793303063 40 19.592941066329637 25.955124904429777 31.929847555742796 22.522086473497794 41 20.221192404312752 25.180046497838944 32.07498946777138 22.523771630076926 42 19.354397790572484 26.655900388522213 31.49985176863424 22.48985005227106 43 19.462466257860164 26.30473248139306 31.16949866591771 23.063302594829064 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1223.0 1 1117.5 2 1012.0 3 2324.5 4 3637.0 5 3637.0 6 5272.5 7 6908.0 8 7328.0 9 7748.0 10 11450.5 11 15153.0 12 15153.0 13 26490.0 14 37827.0 15 61850.0 16 85873.0 17 78838.0 18 71803.0 19 71803.0 20 72265.5 21 72728.0 22 58732.5 23 44737.0 24 50536.0 25 56335.0 26 56335.0 27 63864.5 28 71394.0 29 77574.0 30 83754.0 31 92461.5 32 101169.0 33 101169.0 34 113263.5 35 125358.0 36 136232.0 37 147106.0 38 156379.0 39 165652.0 40 165652.0 41 172911.0 42 180170.0 43 189643.0 44 199116.0 45 207723.0 46 216330.0 47 216330.0 48 260342.5 49 304355.0 50 286082.0 51 267809.0 52 245371.5 53 222934.0 54 222934.0 55 201933.5 56 180933.0 57 159437.0 58 137941.0 59 125154.0 60 112367.0 61 112367.0 62 99549.0 63 86731.0 64 75106.0 65 63481.0 66 54231.5 67 44982.0 68 44982.0 69 38416.0 70 31850.0 71 27333.5 72 22817.0 73 18498.5 74 14180.0 75 14180.0 76 11382.0 77 8584.0 78 6667.0 79 4750.0 80 3768.5 81 2787.0 82 2787.0 83 2124.5 84 1462.0 85 1092.0 86 722.0 87 532.5 88 343.0 89 343.0 90 296.5 91 250.0 92 167.0 93 84.0 94 59.0 95 34.0 96 34.0 97 24.5 98 15.0 99 10.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3204450.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.50036079754973 #Duplication Level Percentage of deduplicated Percentage of total 1 77.7242249275713 36.91928726769545 2 11.96419093273927 11.366067719117765 3 4.006752059639306 5.709665053775775 4 1.872187938241994 3.5571841018926196 5 1.016957940178658 2.4152934537209623 6 0.6575413040358689 1.8740069508597066 7 0.42771723143717777 1.4221705968816518 8 0.3315395902215618 1.2598600123356782 9 0.2412850751302951 1.031501531137762 >10 1.528493683378155 13.648143604273594 >50 0.14326839936482122 4.687648143137834 >100 0.07674903489894315 6.825267148888026 >500 0.005336540117441904 1.7118235407273121 >1k 0.003228277354779002 3.024670146732312 >5k 2.635328452880818E-4 0.732610403772371 >10k+ 2.635328452880818E-4 3.8148003250511855 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 44727 1.3957777465711745 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31655 0.9878450280079264 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31643 0.9874705487681193 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13874 0.4329604144236921 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6807 0.21242334878060196 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5541 0.17291578898094837 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5535 0.1727285493610448 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5527 0.1724788965345067 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4927 0.15375493454414954 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4627 0.14439295354897097 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4485 0.13996161587791978 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4040 0.12607467740173822 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3452 0.10772519465118818 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3313 0.10338747679008878 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 6.241320663452386E-5 0.0 10 3.120660331726193E-5 0.0 0.0 1.872396199035716E-4 0.0 11 3.120660331726193E-5 0.0 0.0 3.744792398071432E-4 0.0 12 3.120660331726193E-5 0.0 0.0 6.553386696625006E-4 0.0 13 3.120660331726193E-5 0.0 0.0 7.177518762970244E-4 0.0 14 3.120660331726193E-5 0.0 0.0 7.801650829315483E-4 0.0 15 3.120660331726193E-5 0.0 0.0 0.0011858509260559535 0.0 16 6.241320663452386E-5 0.0 0.0 0.0016539499758148825 0.0 17 9.36198099517858E-5 0.0 0.0 0.002215668835525597 0.0 18 9.36198099517858E-5 0.0 0.0 0.0025901480753327405 0.0 19 1.2482641326904773E-4 0.0 0.0 0.003339106554947027 0.0 20 1.2482641326904773E-4 0.0 0.0 0.005866841423645243 0.0 21 1.5603301658630967E-4 0.0 0.0 0.010610245127869056 0.0 22 1.5603301658630967E-4 0.0 0.0 0.01697639220459049 0.0 23 1.5603301658630967E-4 0.0 0.0 0.020533944982758352 0.0 24 1.5603301658630967E-4 0.0 0.0 0.026244753389817285 0.0 25 1.5603301658630967E-4 0.0 0.0 0.02998954578788872 0.0 26 1.5603301658630967E-4 0.0 0.0 0.03891463433662563 0.0 27 1.5603301658630967E-4 0.0 0.0 0.0883771005944858 0.0 28 1.5603301658630967E-4 0.0 0.0 0.22696562592644604 0.0 29 1.5603301658630967E-4 0.0 0.0 0.42369205323846526 0.0 30 1.872396199035716E-4 0.0 0.0 0.6840175381110642 0.0 31 1.872396199035716E-4 0.0 0.0 1.1113919705409665 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10725 0.0 20.13007 1 ATATTCG 65 0.0015807679 17.076923 8 ATTGGAC 980 0.0 16.80102 3 GTATTGG 1040 0.0 16.721153 1 TTGGACC 1255 0.0 15.920319 4 TAGGTCG 210 0.0 15.857142 21 GGACCCT 1280 0.0 15.464844 6 GGTAAAC 500 0.0 15.17 35 TGGACCC 1335 0.0 15.104869 5 GACCCTC 1330 0.0 14.605263 7 TCTAATA 800 0.0 14.568749 2 CGCGATA 90 8.279709E-4 14.388888 14 CTAATAC 905 0.0 13.900553 3 TAATACT 880 0.0 13.875 4 CGAACTA 335 0.0 13.80597 24 ATTAGAC 255 1.8189894E-12 13.784313 3 TCTAGAC 215 1.9826984E-10 13.767442 3 CTAGTAC 430 0.0 13.767442 3 GTATTAG 735 0.0 13.591837 1 ACGTTTA 195 1.0279109E-8 13.282052 26 >>END_MODULE