##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088551_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3175654 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.72383389374283 31.0 31.0 34.0 30.0 34.0 2 31.877020922304506 31.0 31.0 34.0 30.0 34.0 3 31.991579057416203 33.0 31.0 34.0 30.0 34.0 4 35.66539301825703 37.0 35.0 37.0 33.0 37.0 5 35.58320805730095 37.0 35.0 37.0 33.0 37.0 6 35.63851162626659 37.0 35.0 37.0 33.0 37.0 7 35.48164378109202 37.0 35.0 37.0 33.0 37.0 8 35.531710948358985 37.0 35.0 37.0 33.0 37.0 9 37.12588399114009 39.0 37.0 39.0 33.0 39.0 10 36.98882560883522 39.0 37.0 39.0 33.0 39.0 11 37.04924906806598 39.0 37.0 39.0 33.0 39.0 12 36.89848232836449 39.0 37.0 39.0 33.0 39.0 13 36.95539753386232 39.0 37.0 39.0 33.0 39.0 14 37.95550428352711 40.0 37.0 41.0 33.0 41.0 15 37.96517882615675 40.0 37.0 41.0 33.0 41.0 16 37.86044197510182 40.0 37.0 41.0 32.0 41.0 17 37.91205402099851 40.0 37.0 41.0 33.0 41.0 18 37.89094403861378 40.0 37.0 41.0 33.0 41.0 19 37.960394614778565 40.0 37.0 41.0 33.0 41.0 20 37.862437469573194 40.0 37.0 41.0 32.0 41.0 21 37.7302476907119 40.0 37.0 41.0 32.0 41.0 22 37.61497285283598 40.0 37.0 41.0 32.0 41.0 23 37.43191953531461 39.0 36.0 41.0 32.0 41.0 24 37.57758275933083 39.0 36.0 41.0 32.0 41.0 25 37.52232264598096 39.0 36.0 41.0 32.0 41.0 26 37.29853504191578 39.0 36.0 41.0 31.0 41.0 27 37.253050237840775 39.0 36.0 41.0 31.0 41.0 28 37.094144072370604 39.0 36.0 41.0 31.0 41.0 29 36.86196418123637 39.0 35.0 41.0 30.0 41.0 30 36.70680873923922 39.0 35.0 41.0 30.0 41.0 31 36.4293647859622 38.0 35.0 40.0 30.0 41.0 32 36.25635003057638 38.0 35.0 40.0 30.0 41.0 33 36.07411166329833 38.0 35.0 40.0 30.0 41.0 34 35.866031689850345 38.0 35.0 40.0 29.0 41.0 35 35.661841308908336 38.0 35.0 40.0 27.0 41.0 36 35.56853013583974 38.0 35.0 40.0 27.0 41.0 37 35.39997335981817 38.0 34.0 40.0 26.0 41.0 38 35.24819013658289 38.0 34.0 40.0 25.0 41.0 39 35.099714578477375 38.0 34.0 40.0 24.0 41.0 40 34.897498279094634 38.0 34.0 40.0 24.0 41.0 41 34.738652888507374 38.0 34.0 40.0 23.0 41.0 42 34.42107263574684 38.0 33.0 40.0 21.0 41.0 43 34.013731974579095 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 9.0 13 2.0 14 15.0 15 16.0 16 36.0 17 80.0 18 214.0 19 513.0 20 1111.0 21 2208.0 22 4238.0 23 7328.0 24 11866.0 25 18199.0 26 26807.0 27 37690.0 28 50832.0 29 66880.0 30 83799.0 31 101827.0 32 125158.0 33 154629.0 34 190324.0 35 235413.0 36 309541.0 37 455126.0 38 580565.0 39 711224.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50801693131557 20.98005639153384 15.046318018272773 22.465608658877827 2 18.445901222236426 23.963032496613295 35.75317084291928 21.83789543823099 3 19.300150457197162 24.16544749522461 33.75408655980784 22.780315487770395 4 13.319366656443052 16.317363289577518 35.925954149916834 34.4373159040626 5 12.24251760424782 39.06949560625937 34.6125553980377 14.075431391455115 6 31.99511029854008 38.020672277269504 13.448096045727903 16.536121378462514 7 25.140900110654375 34.44682575620644 20.92337515359041 19.48889897954878 8 27.558701294284578 34.44622745425037 18.746752637409493 19.248318614055563 9 24.573835814607005 14.66781330711721 21.9454953215936 38.81285555668219 10 16.420397184328014 28.62525325492009 32.476271029526515 22.47807853122538 11 33.241971574988966 22.95476774232961 23.214241853803973 20.589018828877453 12 21.59315844862192 28.22876799550581 30.50461416766436 19.67345938820791 13 32.224133989408166 21.407842290123547 25.90830109325512 20.459722627213168 14 20.30495135805097 23.46672527926531 28.764972506450643 27.463350856233077 15 22.198640028164277 30.62178688232408 25.617179957262348 21.562393132249294 16 21.08617626479459 28.796556551815783 26.700925226740697 23.416341956648928 17 21.37336120370796 27.437781320005268 27.36050589894239 23.828351577344385 18 22.688397413572133 25.762126478514347 30.27152832141033 21.27794778650319 19 22.49102074722246 25.220505760388257 31.831616416649926 20.45685707573936 20 23.261035364683934 24.93042378042444 31.098224176815233 20.71031667807639 21 22.049536882796424 25.702674157827015 31.854792745053462 20.392996214323098 22 20.808910542521318 26.24753830234654 31.29157017735559 21.651980977776546 23 21.76339109991202 26.282743649024738 31.76662193047479 20.18724332058845 24 21.391656647733033 26.43335829407108 30.192237567442803 21.982747490753084 25 21.398836271205866 26.55868680907933 31.191433323655538 20.851043596059267 26 20.738405380435022 27.69237454710116 31.161549715428695 20.40767035703512 27 19.861609608603455 27.388940986644013 30.93523412815124 21.814215276601292 28 20.499147577160485 27.230233520402415 30.7377944826483 21.532824419788806 29 20.59188438035126 27.079366958742984 30.068420552113047 22.26032810879271 30 20.700082565669938 27.41910800106057 31.8637672743945 20.01704215887499 31 21.61255602782923 27.18734471702522 31.284170126846313 19.915929128299243 32 20.835393276471557 27.140015883342457 30.57704019392541 21.44755064626058 33 20.506201242326778 26.864135702441132 31.208973017841362 21.420690037390724 34 19.70828685996648 27.203750786452176 32.03116586378742 21.056796489793914 35 19.312305433778366 29.053574476312594 30.90509860331132 20.72902148659772 36 21.447519156683946 26.98093054218123 30.790193138169336 20.781357162965485 37 20.542130849267583 27.687462173146066 30.66716336225546 21.10324361533089 38 20.16882191825684 26.150676364616547 32.15841524297042 21.52208647415619 39 19.670719795040643 26.011618394195335 32.94105718066263 21.37660463010139 40 18.511745926980712 26.25065577043343 32.94445805493923 22.293140247646626 41 19.570268045574235 25.452552450613325 33.15669780146074 21.820481702351703 42 18.74650072079641 27.184731082164493 32.27026621917879 21.798501977860308 43 18.567199071435365 27.103456484868943 31.876016719705607 22.453327723990082 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1329.0 1 1169.5 2 1010.0 3 2310.5 4 3611.0 5 3611.0 6 5483.5 7 7356.0 8 8191.5 9 9027.0 10 13427.5 11 17828.0 12 17828.0 13 31725.5 14 45623.0 15 77867.5 16 110112.0 17 99829.0 18 89546.0 19 89546.0 20 89551.0 21 89556.0 22 71044.5 23 52533.0 24 58573.0 25 64613.0 26 64613.0 27 70195.0 28 75777.0 29 79393.0 30 83009.0 31 89796.0 32 96583.0 33 96583.0 34 105320.0 35 114057.0 36 125217.0 37 136377.0 38 142352.0 39 148327.0 40 148327.0 41 152801.0 42 157275.0 43 164450.5 44 171626.0 45 186576.5 46 201527.0 47 201527.0 48 263926.0 49 326325.0 50 301336.5 51 276348.0 52 249105.5 53 221863.0 54 221863.0 55 198379.0 56 174895.0 57 151958.0 58 129021.0 59 116138.0 60 103255.0 61 103255.0 62 91558.0 63 79861.0 64 70226.0 65 60591.0 66 52071.5 67 43552.0 68 43552.0 69 37138.0 70 30724.0 71 25870.5 72 21017.0 73 17223.0 74 13429.0 75 13429.0 76 10734.5 77 8040.0 78 6334.5 79 4629.0 80 3659.0 81 2689.0 82 2689.0 83 2035.5 84 1382.0 85 1041.5 86 701.0 87 527.5 88 354.0 89 354.0 90 268.0 91 182.0 92 120.5 93 59.0 94 42.0 95 25.0 96 25.0 97 14.5 98 4.0 99 5.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3175654.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.05176132163102 #Duplication Level Percentage of deduplicated Percentage of total 1 77.51816313444063 36.47366109892957 2 12.227049723241443 11.506084504913419 3 4.2827825809353435 6.045373913718259 4 1.9083823052882138 3.5917099495538007 5 1.0501934578675276 2.4706725960560636 6 0.6194090671647444 1.7486572553213804 7 0.42004532306070635 1.3834710599443827 8 0.3010980940052392 1.1333756522826026 9 0.20979907019324298 0.8884274198609323 >10 1.2569044181439046 11.118185967376066 >50 0.12168211363685036 4.007117726518616 >100 0.07339870953323581 6.6247749165384135 >500 0.005646837630791412 1.7773324104893347 >1k 0.004638473767982955 4.4244636134745745 >5k 5.377940600559948E-4 1.847551448207143 >10k+ 2.688970300279974E-4 4.959140466815444 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 58517 1.8426755559642203 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 40845 1.286191757666295 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 40584 1.2779729781644977 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16839 0.5302529809607721 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9752 0.3070863513468407 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8398 0.26444946458272844 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7781 0.24502039579878662 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7754 0.2441701772296352 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7331 0.23085008631292958 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6141 0.19337749011699637 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6043 0.19029151160674304 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5211 0.16409218384622506 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4841 0.15244104049118704 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 4214 0.1326970759408928 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3878 0.12211657819145286 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 3805 0.11981783909708048 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3768 0.11865272476157668 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3599 0.11333098631022145 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3266 0.10284495729068723 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 3.148957663523797E-5 0.0 8 0.0 0.0 0.0 3.148957663523797E-5 0.0 9 0.0 0.0 3.148957663523797E-5 1.889374598114278E-4 0.0 10 3.148957663523797E-5 0.0 3.148957663523797E-5 2.834061897171417E-4 0.0 11 3.148957663523797E-5 0.0 3.148957663523797E-5 5.353228027990455E-4 0.0 12 6.297915327047594E-5 0.0 3.148957663523797E-5 8.502185691514252E-4 0.0 13 6.297915327047594E-5 0.0 3.148957663523797E-5 9.446872990571391E-4 0.0 14 6.297915327047594E-5 0.0 3.148957663523797E-5 0.0012280934887742808 0.0 15 6.297915327047594E-5 0.0 3.148957663523797E-5 0.0014170309485857086 0.0 16 6.297915327047594E-5 0.0 3.148957663523797E-5 0.001983843328019992 0.0 17 6.297915327047594E-5 0.0 3.148957663523797E-5 0.0028025723205361793 0.0 18 6.297915327047594E-5 0.0 3.148957663523797E-5 0.0034638534298761766 0.0 19 9.44687299057139E-5 0.0 3.148957663523797E-5 0.004219603269121888 0.0 20 9.44687299057139E-5 0.0 3.148957663523797E-5 0.007179623472834257 0.0 21 1.2595830654095187E-4 0.0 3.148957663523797E-5 0.012784768113906615 0.0 22 1.2595830654095187E-4 0.0 3.148957663523797E-5 0.020090349893281824 0.0 23 1.5744788317618985E-4 0.0 3.148957663523797E-5 0.02465633850539133 0.0 24 1.5744788317618985E-4 0.0 3.148957663523797E-5 0.030387441453004642 0.0 25 1.5744788317618985E-4 0.0 3.148957663523797E-5 0.034953430065114144 0.0 26 1.889374598114278E-4 0.0 3.148957663523797E-5 0.04336114702672268 0.0 27 1.889374598114278E-4 0.0 3.148957663523797E-5 0.09912918724772912 0.0 28 1.889374598114278E-4 0.0 3.148957663523797E-5 0.24139909448573427 0.0 29 1.889374598114278E-4 0.0 3.148957663523797E-5 0.4696985250912096 0.0 30 2.204270364466658E-4 0.0 3.148957663523797E-5 0.7770997722044026 0.0 31 2.204270364466658E-4 0.0 3.148957663523797E-5 1.2269598640154122 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14390 0.0 21.701181 1 GTATTGG 900 0.0 20.761112 1 ATTGGAC 945 0.0 19.380953 3 GGACCCT 1330 0.0 18.221804 6 TTGGACC 1310 0.0 17.935116 4 AACCGTC 85 2.7255639E-5 17.411764 7 ACGTTTA 195 1.8189894E-12 16.128206 26 TGGACCC 1455 0.0 16.020618 5 GCCGTCA 225 0.0 15.622222 13 GACCCTC 1445 0.0 15.491349 7 TATACAC 1930 0.0 15.336788 37 CGCGAAT 85 5.3678494E-4 15.235294 35 TAGTACT 500 0.0 15.17 4 CCGTATA 160 1.0984877E-8 15.031251 2 TCACGTT 210 9.094947E-12 14.9761915 24 TATACTG 370 0.0 14.5 5 TATTGGA 1220 0.0 14.405737 2 CCCGTAT 155 1.2121927E-7 14.322581 1 CTAATAC 470 0.0 14.170214 3 CTAGGCA 395 0.0 14.050632 4 >>END_MODULE