##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088550_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6079753 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74647572031298 31.0 31.0 34.0 30.0 34.0 2 31.905193187946946 31.0 31.0 34.0 30.0 34.0 3 32.04569659326621 33.0 31.0 34.0 30.0 34.0 4 35.711920533613785 37.0 35.0 37.0 35.0 37.0 5 35.61163636088506 37.0 35.0 37.0 33.0 37.0 6 35.647037305627386 37.0 35.0 37.0 33.0 37.0 7 35.52398362236097 37.0 35.0 37.0 33.0 37.0 8 35.539569617384124 37.0 35.0 37.0 33.0 37.0 9 37.16662634156355 39.0 37.0 39.0 33.0 39.0 10 37.01151230979285 39.0 37.0 39.0 33.0 39.0 11 37.071110454651695 39.0 37.0 39.0 33.0 39.0 12 36.936191486726514 39.0 37.0 39.0 33.0 39.0 13 36.994081667462474 39.0 37.0 39.0 33.0 39.0 14 38.080656566146686 40.0 37.0 41.0 33.0 41.0 15 38.07847045759918 40.0 37.0 41.0 33.0 41.0 16 37.97223308249529 40.0 37.0 41.0 33.0 41.0 17 37.958634339256875 40.0 37.0 41.0 33.0 41.0 18 37.91941087080347 40.0 37.0 41.0 33.0 41.0 19 37.973964896271276 40.0 37.0 41.0 33.0 41.0 20 37.868840724286 40.0 37.0 41.0 32.0 41.0 21 37.72527502350836 40.0 37.0 41.0 32.0 41.0 22 37.600271096539615 39.0 37.0 41.0 32.0 41.0 23 37.45488854563664 39.0 36.0 41.0 32.0 41.0 24 37.6386818675035 39.0 37.0 41.0 32.0 41.0 25 37.58463148091707 39.0 37.0 41.0 32.0 41.0 26 37.4155400721049 39.0 36.0 41.0 32.0 41.0 27 37.376056724672864 39.0 36.0 41.0 31.0 41.0 28 37.26094415348781 39.0 36.0 41.0 31.0 41.0 29 37.07433377638861 39.0 36.0 41.0 31.0 41.0 30 36.991035820040715 39.0 36.0 41.0 31.0 41.0 31 36.810849388124815 39.0 35.0 41.0 30.0 41.0 32 36.664277150732936 39.0 35.0 40.0 30.0 41.0 33 36.53306705058577 39.0 35.0 40.0 30.0 41.0 34 36.37685330308649 39.0 35.0 40.0 30.0 41.0 35 36.19779487752216 38.0 35.0 40.0 30.0 41.0 36 36.16629507810597 39.0 35.0 40.0 29.0 41.0 37 36.073497393726356 39.0 35.0 40.0 29.0 41.0 38 35.95927811541028 38.0 35.0 40.0 28.0 41.0 39 35.88395729234395 39.0 35.0 40.0 27.0 41.0 40 35.756085814670435 38.0 35.0 40.0 27.0 41.0 41 35.67582613964745 38.0 35.0 40.0 27.0 41.0 42 35.458135881507026 38.0 35.0 40.0 26.0 41.0 43 35.10875227990348 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 8.0 14 8.0 15 30.0 16 63.0 17 149.0 18 344.0 19 765.0 20 1703.0 21 3483.0 22 6504.0 23 11534.0 24 18661.0 25 28918.0 26 42586.0 27 60861.0 28 84107.0 29 111005.0 30 143451.0 31 179583.0 32 222384.0 33 276096.0 34 345678.0 35 433833.0 36 571956.0 37 823656.0 38 1204369.0 39 1508016.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50232747942228 21.05057557436955 13.367977284603501 24.079119661604672 2 18.171182283227623 23.17390196608316 35.884155162224516 22.770760588464693 3 18.67028150650199 24.733060701643637 32.57796821680091 24.018689575053457 4 13.010166695916759 16.588831816029366 37.828313091008795 32.57268839704508 5 12.490639011157196 38.57117221702921 35.65306024767783 13.285128524135766 6 31.552021932469955 39.0478856624603 14.52049121074491 14.879601194324835 7 26.517261474273706 32.93832825116415 22.09652267123352 18.44788760332862 8 26.466206768597345 35.156707846519424 19.673463708147352 18.703621676735878 9 25.193868895660724 14.45703468545515 21.2839732140434 39.065123204840724 10 15.733172054851572 28.078163701716168 34.29126150355121 21.897402739881045 11 33.54075404050131 22.946162451007467 23.310289085757265 20.202794422733948 12 20.989273741877344 27.59256831650891 30.927440637802228 20.490717303811522 13 30.332630289421296 21.1490499696287 26.00901714263721 22.509302598312793 14 20.610343874167256 22.36636916006292 28.18482921921335 28.83845774655648 15 23.120462295096527 29.618472987307214 25.17788140406362 22.08318331353264 16 21.972701851539036 28.57227916989391 26.176836460296986 23.278182518270068 17 21.522782257766064 27.432315095695497 27.4836165219212 23.561286124617233 18 22.054086736747365 26.62636130119102 29.402691194856107 21.91686076720551 19 22.790843641180818 25.640630466402172 30.21311885532192 21.35540703709509 20 23.162075827751554 25.944919143919172 29.780420355892744 21.11258467243653 21 22.393080771537925 26.35235345909612 29.845735509320853 21.408830260045104 22 21.593179854510534 26.909185290915598 29.749975040104427 21.747659814469436 23 22.17169019859853 26.752813806745106 30.056484202565464 21.019011792090897 24 22.233501920226033 26.75722188055995 28.628005117971078 22.38127108124294 25 22.273585785475166 26.633335268718977 29.513222000959576 21.57985694484628 26 21.66773880452051 27.29997419303054 29.4256691020178 21.606617900431154 27 21.194134038011082 27.362493180232818 29.32591175990209 22.117461021854012 28 21.504656521408023 27.086429333560098 29.470325521447993 21.938588623583886 29 21.82435700924034 27.257949459459947 29.20414694478542 21.713546586514287 30 21.793763661122416 27.30620799891048 29.807214207550864 21.092814132416233 31 22.050353032434046 27.34277198432239 29.546693755486448 21.060181227757113 32 21.35111409953661 27.069767472461464 29.392082211234566 22.187036216767357 33 21.184988929648952 26.858640474374536 30.027404073816815 21.928966522159698 34 21.238823353514526 26.881338764913643 30.390280657783304 21.489557223788534 35 20.976444273311763 28.223070904360753 29.378282308508258 21.42220251381923 36 22.26588810433582 27.204443996326827 29.014073433575344 21.515594465762014 37 21.408188786616826 27.077859906479752 29.449222690461273 22.064728616442146 38 21.18362374260928 26.440580727539427 30.261936628017615 22.113858901833677 39 20.72855591337345 26.485533211628827 30.86944486067115 21.91646601432657 40 20.144667061309892 26.60502819769158 30.917275751169498 22.333028989829025 41 20.881473309853213 25.603359215415495 31.092792749968623 22.422374724762665 42 19.978163586579914 26.971950998667214 30.642116546511016 22.407768868241853 43 20.168878571218272 26.16872757824208 30.49697907135372 23.16541477918593 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2811.0 1 2296.5 2 1782.0 3 3755.5 4 5729.0 5 5729.0 6 8198.0 7 10667.0 8 11182.5 9 11698.0 10 16881.5 11 22065.0 12 22065.0 13 38962.5 14 55860.0 15 90022.0 16 124184.0 17 116301.0 18 108418.0 19 108418.0 20 113661.5 21 118905.0 22 103329.0 23 87753.0 24 101702.5 25 115652.0 26 115652.0 27 131136.5 28 146621.0 29 161426.0 30 176231.0 31 197565.5 32 218900.0 33 218900.0 34 245508.0 35 272116.0 36 294500.0 37 316884.0 38 333388.5 39 349893.0 40 349893.0 41 359322.5 42 368752.0 43 387146.0 44 405540.0 45 405199.5 46 404859.0 47 404859.0 48 455562.0 49 506265.0 50 486174.5 51 466084.0 52 436409.0 53 406734.0 54 406734.0 55 378294.5 56 349855.0 57 311393.5 58 272932.0 59 248120.0 60 223308.0 61 223308.0 62 196560.5 63 169813.0 64 144968.5 65 120124.0 66 102267.5 67 84411.0 68 84411.0 69 70886.0 70 57361.0 71 48088.0 72 38815.0 73 31624.0 74 24433.0 75 24433.0 76 19726.5 77 15020.0 78 11775.5 79 8531.0 80 6932.5 81 5334.0 82 5334.0 83 4027.5 84 2721.0 85 2090.5 86 1460.0 87 1044.5 88 629.0 89 629.0 90 511.0 91 393.0 92 258.0 93 123.0 94 89.5 95 56.0 96 56.0 97 38.5 98 21.0 99 15.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 6079753.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.20031641569554 #Duplication Level Percentage of deduplicated Percentage of total 1 73.41885034860717 30.248798652392146 2 13.496809366308945 11.121456329885039 3 5.11963735475461 6.327920368485134 4 2.4811051043914447 4.0888926144609945 5 1.4115734674875422 2.9078636752243634 6 0.8329079085691717 2.0589641626911055 7 0.5790303277976175 1.6699362903682027 8 0.3849753262505672 1.2688884203007191 9 0.30589628680627984 1.1342721426124576 >10 1.664260361939202 12.954984044705997 >50 0.16779236895349472 4.833196686491528 >100 0.11957879735029853 9.477033868300664 >500 0.010413620548207754 2.999580197340739 >1k 0.006688732733881035 5.015534373665555 >5k 3.204183345536728E-4 0.9740441318298152 >10k+ 1.602091672768364E-4 2.9186340412456606 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 63790 1.0492202561518535 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 46685 0.7678765897232996 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 46052 0.7574649825412315 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20342 0.3345859609757173 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8869 0.14587763680531102 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8810 0.14490720264458112 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8389 0.1379825792264916 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7400 0.12171547100679912 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7240 0.11908378514719266 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6595 0.10847480152565409 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.6448036622540422E-4 0.0 10 0.0 0.0 0.0 2.3027251271556592E-4 0.0 11 0.0 0.0 0.0 2.7961662258318715E-4 0.0 12 0.0 0.0 0.0 3.2896073245080844E-4 0.0 13 1.644803662254042E-5 0.0 0.0 3.2896073245080844E-4 0.0 14 1.644803662254042E-5 0.0 0.0 3.7830484231842973E-4 0.0 15 1.644803662254042E-5 0.0 0.0 4.4409698880859143E-4 0.0 16 3.289607324508084E-5 0.0 0.0 6.085773550339956E-4 0.0 17 3.289607324508084E-5 0.0 0.0 8.388498677495616E-4 0.0 18 3.289607324508084E-5 0.0 0.0 0.0010033302339749657 0.0 19 3.289607324508084E-5 0.0 0.0 0.0012500507833130721 0.0 20 3.289607324508084E-5 0.0 0.0 0.0022862770905331185 0.0 21 3.289607324508084E-5 0.0 0.0 0.004457417924708455 0.0 22 3.289607324508084E-5 0.0 0.0 0.0074509605900108114 0.0 23 3.289607324508084E-5 0.0 0.0 0.009013524069152151 0.0 24 3.289607324508084E-5 0.0 0.0 0.011793242258361482 0.0 25 3.289607324508084E-5 0.0 0.0 0.013915038982669197 0.0 26 3.289607324508084E-5 0.0 0.0 0.01756650311287317 0.0 27 3.289607324508084E-5 0.0 0.0 0.04692624848410783 0.0 28 3.289607324508084E-5 0.0 0.0 0.12872233460800134 0.0 29 3.289607324508084E-5 0.0 0.0 0.24683568559446412 0.0 30 3.289607324508084E-5 0.0 0.0 0.3966444031525623 0.0 31 3.289607324508084E-5 0.0 0.0 0.6538423518192269 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16100 0.0 22.096584 1 GTATTGG 1560 0.0 16.839745 1 TATAGCG 70 0.0025942093 15.857142 5 TTTAGCG 155 7.226845E-9 15.516129 26 GGGTAAG 995 0.0 15.246231 1 TAATACT 2130 0.0 15.199531 4 TATACCG 270 0.0 15.074075 5 TCTATAC 695 0.0 14.906475 3 ATGCTAG 1620 0.0 14.503086 15 CGAGTTC 885 0.0 14.42373 14 CGTTTAG 510 0.0 14.1470585 26 ATACTGG 1965 0.0 14.122137 6 TACTGGT 1930 0.0 13.994819 7 AATACTG 2180 0.0 13.832569 5 CTCTAAT 1880 0.0 13.776596 1 GTATCAA 25865 0.0 13.739997 2 CCGAGTT 880 0.0 13.664773 13 GTATTAG 1990 0.0 13.479899 1 GGACCCT 1915 0.0 13.428198 6 CGAACTA 1270 0.0 13.401575 24 >>END_MODULE