##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088549_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2955005 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.472081434718383 31.0 31.0 34.0 30.0 34.0 2 31.63776372628811 31.0 31.0 34.0 30.0 34.0 3 31.762849132234972 31.0 31.0 34.0 30.0 34.0 4 35.48423843614478 37.0 35.0 37.0 33.0 37.0 5 35.36975571953347 37.0 35.0 37.0 33.0 37.0 6 35.42418168497177 37.0 35.0 37.0 33.0 37.0 7 35.27927837685554 37.0 35.0 37.0 32.0 37.0 8 35.322790655176554 37.0 35.0 37.0 32.0 37.0 9 36.88776804100162 39.0 37.0 39.0 33.0 39.0 10 36.69349019714011 39.0 35.0 39.0 32.0 39.0 11 36.77307314200822 39.0 37.0 39.0 32.0 39.0 12 36.60222740739864 38.0 35.0 39.0 32.0 39.0 13 36.67487263134919 39.0 35.0 39.0 32.0 39.0 14 37.65094475305456 39.0 37.0 41.0 32.0 41.0 15 37.65733425154949 39.0 37.0 41.0 32.0 41.0 16 37.53627354268436 39.0 36.0 41.0 32.0 41.0 17 37.540439694687485 39.0 36.0 41.0 32.0 41.0 18 37.49771557070123 39.0 36.0 41.0 32.0 41.0 19 37.557655232393856 39.0 37.0 41.0 32.0 41.0 20 37.44735017368837 39.0 36.0 41.0 32.0 41.0 21 37.30049390779373 39.0 36.0 41.0 31.0 41.0 22 37.174887013727556 39.0 36.0 40.0 31.0 41.0 23 36.99449916328399 39.0 36.0 40.0 31.0 41.0 24 37.1674291583263 39.0 36.0 41.0 31.0 41.0 25 37.10479948426483 39.0 36.0 41.0 31.0 41.0 26 36.88025773222042 39.0 36.0 40.0 30.0 41.0 27 36.832069658088564 39.0 36.0 40.0 30.0 41.0 28 36.68098497295267 39.0 35.0 40.0 30.0 41.0 29 36.46029093013379 39.0 35.0 40.0 30.0 41.0 30 36.34295779533368 38.0 35.0 40.0 30.0 41.0 31 36.104890854668604 38.0 35.0 40.0 29.0 41.0 32 35.945041378948595 38.0 35.0 40.0 29.0 41.0 33 35.779977022035496 38.0 35.0 40.0 28.0 41.0 34 35.58401187138431 38.0 34.0 40.0 27.0 41.0 35 35.37009345161852 38.0 34.0 40.0 26.0 41.0 36 35.32936255607012 38.0 34.0 40.0 26.0 41.0 37 35.19440880810692 38.0 34.0 40.0 25.0 41.0 38 35.06351461334245 38.0 34.0 40.0 25.0 41.0 39 34.94336760851505 38.0 34.0 40.0 24.0 41.0 40 34.77922372381773 38.0 33.0 40.0 24.0 41.0 41 34.66115015033815 38.0 33.0 40.0 23.0 41.0 42 34.392632161366905 38.0 33.0 40.0 22.0 41.0 43 34.00633806034169 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 1.0 13 4.0 14 11.0 15 17.0 16 50.0 17 123.0 18 272.0 19 643.0 20 1390.0 21 2727.0 22 4934.0 23 8552.0 24 13258.0 25 20029.0 26 28611.0 27 39273.0 28 52622.0 29 68036.0 30 85067.0 31 103394.0 32 126370.0 33 153269.0 34 188996.0 35 232404.0 36 305507.0 37 428392.0 38 587131.0 39 503920.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.91485462799555 21.609032810435178 14.196388838597565 23.279723722971703 2 19.06626215522478 23.96290361606833 34.50904482395123 22.46178940475566 3 19.884974813917406 24.70879067886518 32.53216153610569 22.874072971111726 4 14.164578401728592 16.8677548768953 36.17103862768422 32.796628093691886 5 12.750096869548443 38.921355463019516 34.7525638704503 13.575983796981731 6 32.426341072180925 38.09293046881477 13.861262502093904 15.619465956910394 7 26.257823590823026 33.36545961851164 21.490894262446254 18.885822528219073 8 27.497652288236402 34.71997509310475 18.925213324512143 18.85715929414671 9 25.155727316874255 14.429654095339941 21.18108091187663 39.23353767590918 10 16.22819589137751 28.34117031950877 33.27222796577332 22.1584058233404 11 34.09127903336881 22.841213466643882 22.796441968795314 20.271065531191994 12 21.3100823856474 27.391459574518485 30.800692384615253 20.497765655218856 13 31.59358444401955 20.908966313085763 25.802122162229846 21.69532708066484 14 20.69945736132426 22.400063620873738 28.062118338209242 28.838360679592757 15 23.097287483439114 29.914230263569774 24.72564344222768 22.262838810763434 16 22.096849243909908 28.20915700650253 26.208043641212114 23.48595010837545 17 22.05387131324651 27.167534403495086 27.17985248755924 23.59874179569916 18 22.911500995768197 25.924558503285105 29.21900301353128 21.94493748741542 19 22.958066060801926 25.24709772064683 30.48515992358727 21.309676294963968 20 23.490924719247513 25.18865450312267 29.85639618207076 21.46402459555906 21 22.602973599029443 25.78997328261712 30.279508833318385 21.32754428503505 22 21.792315072224923 26.26956637975232 29.830846309904718 22.10727223811804 23 22.44067268921711 26.17728227194201 30.207867668582626 21.174177370258256 24 22.196612188473456 26.332138185891395 28.908479004265647 22.562770621369506 25 22.32405698129106 26.230581674142684 29.753519875600887 21.691841468965364 26 21.83806795589178 27.101172417643966 29.788748242388763 21.272011384075494 27 21.293974121871198 26.97646873693953 29.458494994086305 22.271062147102967 28 21.64270449626989 26.876096656350835 29.530169999712353 21.951028847666926 29 21.881113568335756 26.841409743807542 28.950306344659317 22.327170343197388 30 21.769540153062348 27.08289833688945 30.0579863655053 21.089575144542902 31 22.365545912781872 26.862492618455807 29.834230398933336 20.937731069828985 32 21.70585159754383 26.821748186551293 29.17138888089868 22.3010113350062 33 21.572586171597003 26.60344060331539 29.754704306760903 22.069268918326703 34 21.197933675239128 26.933592328946993 30.238392151620726 21.630081844193157 35 20.876479058411068 28.369089053994834 29.41714142615664 21.33729046143746 36 22.440706530107395 26.758465721716206 29.26539887411358 21.535428874062816 37 21.455801259219527 27.163811905563612 29.429459510220795 21.950927324996066 38 21.351402112686777 26.160869440153235 30.40350185532681 22.08422659183318 39 20.99048901778508 25.973763157761155 31.00624195221328 22.029505872240488 40 20.239018208091018 26.3856067925435 30.949829188106282 22.425545811259205 41 21.01458373166881 25.415794558723253 31.15998111678322 22.40964059282472 42 20.05999989847733 26.906993389182084 30.539779120509102 22.493227591831484 43 20.185549601438915 26.539616684235728 30.262486865504457 23.0123468488209 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 800.0 1 720.5 2 641.0 3 1400.5 4 2160.0 5 2160.0 6 3593.5 7 5027.0 8 5392.0 9 5757.0 10 8656.0 11 11555.0 12 11555.0 13 21568.5 14 31582.0 15 53566.5 16 75551.0 17 68475.0 18 61399.0 19 61399.0 20 63491.5 21 65584.0 22 53005.0 23 40426.0 24 46110.5 25 51795.0 26 51795.0 27 58960.0 28 66125.0 29 71674.5 30 77224.0 31 84957.0 32 92690.0 33 92690.0 34 103894.5 35 115099.0 36 125135.0 37 135171.0 38 143716.5 39 152262.0 40 152262.0 41 158219.0 42 164176.0 43 173225.5 44 182275.0 45 189324.5 46 196374.0 47 196374.0 48 235468.0 49 274562.0 50 260198.0 51 245834.0 52 227211.5 53 208589.0 54 208589.0 55 189682.0 56 170775.0 57 151251.0 58 131727.0 59 119961.0 60 108195.0 61 108195.0 62 96785.0 63 85375.0 64 74402.5 65 63430.0 66 54303.0 67 45176.0 68 45176.0 69 38625.0 70 32074.0 71 27186.0 72 22298.0 73 18353.5 74 14409.0 75 14409.0 76 11545.0 77 8681.0 78 6761.0 79 4841.0 80 3728.0 81 2615.0 82 2615.0 83 1978.0 84 1341.0 85 1022.0 86 703.0 87 531.0 88 359.0 89 359.0 90 286.0 91 213.0 92 147.0 93 81.0 94 57.5 95 34.0 96 34.0 97 24.0 98 14.0 99 10.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2955005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.996020617238436 #Duplication Level Percentage of deduplicated Percentage of total 1 78.84976010464501 38.63324471751492 2 11.53350754728855 11.301919471520499 3 3.777398047598673 5.552324178589823 4 1.7484667188943037 3.4267164563000216 5 0.9627537993784405 2.358555250183536 6 0.6099982324088425 1.7932491582949592 7 0.38328871262493497 1.3145735166288266 8 0.29407741905488033 1.1526898629661748 9 0.22372091724990997 0.9865291206675677 >10 1.395338956766668 12.923755000987866 >50 0.1350491369228344 4.603297275977702 >100 0.07819547991873917 7.111504034229831 >500 0.004707008630220569 1.5474238517999197 >1k 0.0031841528968906533 2.906719002712186 >5k 2.7688286059918723E-4 0.7552619505442818 >10k+ 2.7688286059918723E-4 3.632237151081815 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 39752 1.3452430706547027 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28688 0.9708274605288315 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26535 0.8979680237427685 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12122 0.41021927204860903 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6048 0.2046697044505847 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6043 0.20450049999915396 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5168 0.17488972099878003 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5010 0.16954286033356966 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4705 0.15922138879629646 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4566 0.15451750504652276 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3788 0.12818929240390456 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3703 0.12531281672958253 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3148 0.10653112262077391 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 6.76817805722833E-5 0.0 10 0.0 0.0 0.0 6.76817805722833E-5 0.0 11 0.0 0.0 0.0 1.6920445143070825E-4 0.0 12 0.0 0.0 0.0 1.6920445143070825E-4 0.0 13 0.0 0.0 0.0 1.6920445143070825E-4 0.0 14 0.0 0.0 0.0 2.707271222891332E-4 0.0 15 0.0 0.0 0.0 3.384089028614165E-4 0.0 16 0.0 0.0 0.0 7.106586960089746E-4 0.0 17 0.0 0.0 0.0 9.813858182981079E-4 0.0 18 0.0 0.0 0.0 0.0010829084891565328 0.0 19 0.0 0.0 0.0 0.0013874765017318075 0.0 20 0.0 0.0 0.0 0.0025380667714606235 0.0 21 3.384089028614165E-5 0.0 0.0 0.004974610872062822 0.0 22 3.384089028614165E-5 0.0 0.0 0.007749563875526437 0.0 23 3.384089028614165E-5 0.0 0.0 0.00944160838983352 0.0 24 3.384089028614165E-5 0.0 0.0 0.012690333857303117 0.0 25 3.384089028614165E-5 0.0 0.0 0.015296082409336024 0.0 26 3.384089028614165E-5 0.0 0.0 0.020778306635690972 6.76817805722833E-5 27 3.384089028614165E-5 0.0 0.0 0.05587130986241986 6.76817805722833E-5 28 3.384089028614165E-5 0.0 0.0 0.14429755618010798 6.76817805722833E-5 29 3.384089028614165E-5 0.0 0.0 0.276175505625202 6.76817805722833E-5 30 3.384089028614165E-5 0.0 0.0 0.44514307082390725 6.76817805722833E-5 31 3.384089028614165E-5 0.0 0.0 0.7172576696147722 6.76817805722833E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTGG 735 0.0 19.884354 1 GGTATCA 10805 0.0 19.758446 1 ACCGTTA 180 0.0 18.5 8 ATTGGAC 850 0.0 16.976469 3 GGACCGT 240 0.0 16.1875 6 GGACCCT 1145 0.0 15.995632 6 TTGGACC 1155 0.0 15.857142 4 ACGTTTA 155 7.221388E-9 15.5161295 26 GTATTAG 595 0.0 15.235293 1 CGAACTA 320 0.0 15.03125 24 TGTTACG 100 1.0942869E-4 14.8 16 GGGTAAG 370 0.0 14.5 1 GACCCTC 1240 0.0 14.471775 7 TGGACCC 1190 0.0 14.457983 5 GACCGTT 180 3.3360266E-9 14.388888 7 GTATACT 285 0.0 14.280702 4 CCCTCGC 1125 0.0 14.142222 9 CCTCGCA 1110 0.0 14.0 10 TCGCATG 1180 0.0 13.95339 12 TCTATAC 230 4.0017767E-11 13.673913 3 >>END_MODULE