##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088548_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5013916 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74285189460693 31.0 31.0 34.0 30.0 34.0 2 31.8840890034855 31.0 31.0 34.0 30.0 34.0 3 32.00703003400935 33.0 31.0 34.0 30.0 34.0 4 35.66136468979536 37.0 35.0 37.0 33.0 37.0 5 35.592577338750786 37.0 35.0 37.0 33.0 37.0 6 35.6487671512646 37.0 35.0 37.0 33.0 37.0 7 35.499291172807844 37.0 35.0 37.0 33.0 37.0 8 35.549271667096136 37.0 35.0 37.0 33.0 37.0 9 37.14548069812099 39.0 37.0 39.0 33.0 39.0 10 37.01909485519901 39.0 37.0 39.0 33.0 39.0 11 37.07742969766546 39.0 37.0 39.0 33.0 39.0 12 36.92944476931803 39.0 37.0 39.0 33.0 39.0 13 36.98706141068179 39.0 37.0 39.0 33.0 39.0 14 38.004255157046906 40.0 37.0 41.0 33.0 41.0 15 38.012010771620425 40.0 37.0 41.0 33.0 41.0 16 37.90271715760695 40.0 37.0 41.0 33.0 41.0 17 37.95123731630127 40.0 37.0 41.0 33.0 41.0 18 37.92311618303936 40.0 37.0 41.0 33.0 41.0 19 37.990873600594824 40.0 37.0 41.0 33.0 41.0 20 37.90250574600771 40.0 37.0 41.0 32.0 41.0 21 37.76270603655905 40.0 37.0 41.0 32.0 41.0 22 37.649685395606944 40.0 37.0 41.0 32.0 41.0 23 37.46217607155764 39.0 36.0 41.0 32.0 41.0 24 37.6085193688925 39.0 37.0 41.0 32.0 41.0 25 37.55874031395819 40.0 36.0 41.0 32.0 41.0 26 37.34900744248607 39.0 36.0 41.0 31.0 41.0 27 37.314043753425466 39.0 36.0 41.0 31.0 41.0 28 37.169384967757736 39.0 36.0 41.0 31.0 41.0 29 36.95229776486084 39.0 35.0 41.0 31.0 41.0 30 36.8052689753877 39.0 35.0 41.0 30.0 41.0 31 36.529722675848575 39.0 35.0 40.0 30.0 41.0 32 36.369708626949475 38.0 35.0 40.0 30.0 41.0 33 36.185860712465065 38.0 35.0 40.0 30.0 41.0 34 35.97896215253706 38.0 35.0 40.0 29.0 41.0 35 35.7532738881146 38.0 35.0 40.0 28.0 41.0 36 35.67276875001496 38.0 35.0 40.0 27.0 41.0 37 35.50849076849313 38.0 35.0 40.0 26.0 41.0 38 35.360850879831254 38.0 34.0 40.0 25.0 41.0 39 35.229678957525415 38.0 34.0 40.0 25.0 41.0 40 35.02485043626579 38.0 34.0 40.0 24.0 41.0 41 34.873020609040914 38.0 34.0 40.0 23.0 41.0 42 34.55078625170426 38.0 33.0 40.0 22.0 41.0 43 34.1675588502081 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 9.0 13 6.0 14 11.0 15 33.0 16 58.0 17 138.0 18 294.0 19 799.0 20 1631.0 21 3404.0 22 6154.0 23 11090.0 24 17951.0 25 27885.0 26 40841.0 27 58000.0 28 79272.0 29 103156.0 30 130197.0 31 157615.0 32 192005.0 33 237321.0 34 294015.0 35 363956.0 36 481215.0 37 719050.0 38 941068.0 39 1146737.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.44199543829613 20.6392967093984 14.226784014730203 22.691923837575263 2 18.148608792010076 23.85006051158416 35.88243201521525 22.11889868119051 3 19.441111498477436 24.407429242931077 33.55616647745993 22.595292781131555 4 12.840941092750658 15.774915255859892 36.72488729368422 34.65925635770524 5 12.26833477066628 38.85404143188677 34.94386423705543 13.933759560391518 6 31.945628925574344 37.53624911147295 13.366957085040914 17.151164877911796 7 25.915511947148694 33.58612310218201 21.06343624424502 19.43492870642428 8 27.81911384235396 33.83271678265053 18.778475746302888 19.569693628692622 9 24.470812833721187 14.358696874857896 21.9867065981959 39.18378369322502 10 16.221432509040838 27.80575103372294 33.11617107267054 22.856645384565677 11 32.88686926546037 22.42624327970393 23.942363613590654 20.744523841245048 12 21.74713337838129 27.33496133561073 30.99459584085573 19.923309445152253 13 32.37946148280107 20.51436442094363 26.53825871833513 20.567915377920173 14 20.54984566953256 22.518546381710426 28.72367626422142 28.207931684535602 15 22.404503785065405 29.555600851709524 26.001053866877704 22.038841496347366 16 21.395671566895018 28.220456824565872 26.86116001943391 23.522711589105203 17 21.569228523174303 26.385623532584113 27.335539725835055 24.70960821840653 18 23.107547074980914 24.900816048773056 30.442652010923197 21.548984865322833 19 22.578519464626055 23.843797941569026 32.0729744973789 21.50470809642603 20 23.71126680223602 23.745571325885795 31.498852394016975 21.044309477861216 21 22.40986885300831 24.71176222337989 32.31637705936837 20.56199186424344 22 20.862076668217018 25.195834952161146 31.787887950256845 22.15420042936499 23 22.155696266152045 25.285226158555506 32.506567720719694 20.052509854572754 24 21.761174299689106 25.29360284456301 30.188379701614465 22.756843154133417 25 21.92643434792286 25.553599222643538 31.35577061921261 21.164195810220992 26 21.50389037231577 26.483610814381414 31.265741189122437 20.746757624180383 27 20.080013306964055 26.6675588502081 31.10638471007492 22.146043132752922 28 20.95013159374828 26.058912833800967 30.940047659354487 22.05090791309627 29 21.085654406655397 26.13897001864411 30.271368726560237 22.504006848140257 30 21.0826228441003 26.410913146530575 32.093078543796906 20.41338546557222 31 22.15890732912159 26.08170938643567 31.73585277455785 20.02353050988489 32 21.56557868141389 26.010746889257817 30.495405188279978 21.928269241048316 33 21.169899934502293 25.975923808855196 31.26542207727453 21.58875417936798 34 20.29609191697667 26.875240829722713 31.70641470658862 21.12225254671199 35 19.79333120060248 29.31901930546902 30.34302928090538 20.544620213023116 36 22.292415748488807 26.73377455864837 30.23700436943898 20.736805323423845 37 21.29730533977833 27.61027508239069 30.07812655816332 21.014293019667658 38 20.98768706934859 26.113102014473316 31.339495914969458 21.559715001208637 39 20.563328145106542 25.805418359621502 32.17361439641191 21.457639098860053 40 19.263186698779954 26.540731835156393 31.703662366900442 22.492419099163207 41 21.01764369407066 25.413648732846738 31.79075995688799 21.777947616194606 42 19.59608018961626 27.598308388094257 31.03711749458906 21.768493927700426 43 19.88439774419835 27.476008772384695 30.138578308850803 22.501015174566145 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 845.0 1 957.0 2 1069.0 3 3201.0 4 5333.0 5 5333.0 6 8291.5 7 11250.0 8 11909.0 9 12568.0 10 18853.5 11 25139.0 12 25139.0 13 45827.5 14 66516.0 15 113230.5 16 159945.0 17 145061.0 18 130177.0 19 130177.0 20 130999.5 21 131822.0 22 100731.0 23 69640.0 24 77007.0 25 84374.0 26 84374.0 27 95124.5 28 105875.0 29 112893.0 30 119911.0 31 128986.0 32 138061.0 33 138061.0 34 153379.5 35 168698.0 36 186558.0 37 204418.0 38 218752.0 39 233086.0 40 233086.0 41 242398.0 42 251710.0 43 267578.0 44 283446.0 45 306013.5 46 328581.0 47 328581.0 48 439219.0 49 549857.0 50 512740.5 51 475624.0 52 431152.5 53 386681.0 54 386681.0 55 340927.5 56 295174.0 57 251148.0 58 207122.0 59 184529.0 60 161936.0 61 161936.0 62 143025.5 63 124115.0 64 108239.0 65 92363.0 66 78345.5 67 64328.0 68 64328.0 69 54872.5 70 45417.0 71 38601.5 72 31786.0 73 26073.5 74 20361.0 75 20361.0 76 16164.0 77 11967.0 78 9401.0 79 6835.0 80 5313.0 81 3791.0 82 3791.0 83 2893.0 84 1995.0 85 1530.0 86 1065.0 87 787.5 88 510.0 89 510.0 90 427.0 91 344.0 92 222.5 93 101.0 94 81.5 95 62.0 96 62.0 97 37.5 98 13.0 99 9.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5013916.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.077332185087585 #Duplication Level Percentage of deduplicated Percentage of total 1 74.34560063897399 29.05227732669046 2 13.014459471260038 10.171407119355756 3 4.870460290177066 5.709737839605818 4 2.2698988663451036 3.548063681068854 5 1.3259268744224613 2.590684246247071 6 0.8096044325939667 1.8982308810596273 7 0.5490213334811738 1.5018002317600503 8 0.39340084845254086 1.229844450950019 9 0.2880427692100404 1.013034867833994 >10 1.81551457737362 13.618215040009996 >50 0.1845567734800683 5.029033374676695 >100 0.11746657912508406 8.576378793077893 >500 0.00917677844463797 2.4468814029568016 >1k 0.0055880937759146265 4.665257691023999 >5k 7.177368152550871E-4 1.8534016834602718 >10k+ 5.63936069128997E-4 7.095751370222817 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 88553 1.7661444667202244 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 65346 1.3032926758246448 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 64751 1.291425703980681 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27221 0.542908975738724 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 19503 0.3889773981055925 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 19242 0.38377188608664364 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 16629 0.3316569324256729 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 14381 0.28682171779503285 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 14238 0.2839696556543827 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 13735 0.27393757693587206 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 10591 0.21123209882255703 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 9104 0.1815746414578944 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 8803 0.17557134981918326 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 8154 0.1626273754885403 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8064 0.16083237134407516 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 6834 0.13630064803638514 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 6573 0.13109513601743628 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6226 0.12417439781599851 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6122 0.12210017080461659 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 5820 0.1160769346754114 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 5512 0.10993403160324186 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 5465 0.10899664055002119 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5348 0.10666313516221651 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5255 0.10480829754626923 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5234 0.10438946324589403 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 1.994449049405694E-5 0.0 0.0 0.0 0.0 4 1.994449049405694E-5 0.0 0.0 0.0 0.0 5 7.977796197622777E-5 0.0 0.0 0.0 0.0 6 9.97224524702847E-5 0.0 0.0 0.0 0.0 7 9.97224524702847E-5 0.0 0.0 0.0 0.0 8 1.1966694296434165E-4 0.0 0.0 1.994449049405694E-5 0.0 9 1.3961143345839858E-4 0.0 0.0 5.9833471482170825E-5 0.0 10 1.994449049405694E-4 0.0 0.0 7.977796197622777E-5 0.0 11 1.994449049405694E-4 0.0 0.0 1.3961143345839858E-4 0.0 12 1.994449049405694E-4 0.0 0.0 1.7950041444651245E-4 0.0 13 1.994449049405694E-4 0.0 0.0 1.7950041444651245E-4 0.0 14 2.1938939543462635E-4 0.0 0.0 2.5927837642274025E-4 0.0 15 2.1938939543462635E-4 0.0 0.0 3.1911184790491107E-4 0.0 16 2.1938939543462635E-4 0.0 0.0 5.783902243276513E-4 0.0 17 2.1938939543462635E-4 0.0 0.0 0.0010969469771731318 0.0 18 2.1938939543462635E-4 0.0 0.0 0.0015157812775483275 0.0 19 2.1938939543462635E-4 0.0 0.0 0.002353449878298719 0.0 20 2.393338859286833E-4 0.0 0.0 0.0038891756463411034 0.0 21 2.5927837642274025E-4 0.0 0.0 0.008177241102563345 0.0 22 2.5927837642274025E-4 0.0 1.994449049405694E-5 0.013642031497934947 0.0 23 2.5927837642274025E-4 0.0 1.994449049405694E-5 0.018269153292556156 0.0 24 2.5927837642274025E-4 0.0 1.994449049405694E-5 0.024491834326701923 0.0 25 2.7922286691679717E-4 0.0 1.994449049405694E-5 0.029557734912192386 0.0 26 2.991673574108541E-4 0.0 1.994449049405694E-5 0.03685741843301723 0.0 27 2.991673574108541E-4 0.0 1.994449049405694E-5 0.06888827016647267 0.0 28 2.991673574108541E-4 0.0 1.994449049405694E-5 0.1587780888231873 0.0 29 3.1911184790491107E-4 0.0 1.994449049405694E-5 0.29813024390516313 0.0 30 3.1911184790491107E-4 0.0 1.994449049405694E-5 0.4849103973820064 0.0 31 3.1911184790491107E-4 0.0 1.994449049405694E-5 0.7344359179531528 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTGG 2165 0.0 21.704388 1 GGTATCA 22080 0.0 21.189539 1 ATTGGAC 2535 0.0 19.339249 3 TTGGACC 3230 0.0 17.927244 4 GGACCCT 3245 0.0 17.559322 6 TGGACCC 3200 0.0 17.517189 5 CTAATAC 1065 0.0 17.023474 3 CTCTAAT 710 0.0 16.15493 1 TATTGGA 3015 0.0 15.769486 2 ACGTTTA 230 0.0 15.282609 26 GACCCTC 3730 0.0 15.127347 7 TCTAATA 960 0.0 15.031249 2 AATACTG 1110 0.0 15.0 5 GAACCGT 210 9.094947E-12 14.97619 6 TATACCG 310 0.0 14.919354 5 CCGTTTA 300 0.0 14.8 27 TCGGTTC 130 4.4508542E-6 14.230769 13 TAATACT 1065 0.0 14.070422 4 ACCGTAT 120 3.3047123E-5 13.874999 8 ATACTGG 975 0.0 13.661538 6 >>END_MODULE