##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088547_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5520566 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76661994440425 31.0 31.0 34.0 30.0 34.0 2 31.91831725225276 31.0 31.0 34.0 30.0 34.0 3 32.04836370038869 33.0 31.0 34.0 30.0 34.0 4 35.70823172841335 37.0 35.0 37.0 35.0 37.0 5 35.62113993384012 37.0 35.0 37.0 33.0 37.0 6 35.66788441619936 37.0 35.0 37.0 33.0 37.0 7 35.52971380108489 37.0 35.0 37.0 33.0 37.0 8 35.56437238500545 37.0 35.0 37.0 33.0 37.0 9 37.17769735929251 39.0 37.0 39.0 33.0 39.0 10 37.035735828536424 39.0 37.0 39.0 33.0 39.0 11 37.101085830692 39.0 37.0 39.0 33.0 39.0 12 36.958454259943636 39.0 37.0 39.0 33.0 39.0 13 37.01633691183114 39.0 37.0 39.0 33.0 39.0 14 38.065597621693136 40.0 37.0 41.0 33.0 41.0 15 38.07381815560216 40.0 37.0 41.0 33.0 41.0 16 37.96511643914773 40.0 37.0 41.0 33.0 41.0 17 37.986006688444625 40.0 37.0 41.0 33.0 41.0 18 37.95276589393189 40.0 37.0 41.0 33.0 41.0 19 38.01335859402822 40.0 37.0 41.0 33.0 41.0 20 37.91479551190947 40.0 37.0 41.0 32.0 41.0 21 37.78020097939233 40.0 37.0 41.0 32.0 41.0 22 37.666595055651904 40.0 37.0 41.0 32.0 41.0 23 37.50126581223737 39.0 36.0 41.0 32.0 41.0 24 37.65694151650392 40.0 37.0 41.0 32.0 41.0 25 37.60769294307866 40.0 37.0 41.0 32.0 41.0 26 37.40812590593066 39.0 36.0 41.0 32.0 41.0 27 37.37030895020547 39.0 36.0 41.0 32.0 41.0 28 37.23459677866364 39.0 36.0 41.0 31.0 41.0 29 37.033451280176706 39.0 36.0 41.0 31.0 41.0 30 36.9133887720933 39.0 35.0 41.0 31.0 41.0 31 36.68231790001243 39.0 35.0 40.0 30.0 41.0 32 36.526518657688364 39.0 35.0 40.0 30.0 41.0 33 36.36359424015581 39.0 35.0 40.0 30.0 41.0 34 36.18158409844208 38.0 35.0 40.0 30.0 41.0 35 35.98385310491714 38.0 35.0 40.0 29.0 41.0 36 35.92590071380362 38.0 35.0 40.0 28.0 41.0 37 35.790743920098045 38.0 35.0 40.0 27.0 41.0 38 35.665405865992724 38.0 35.0 40.0 27.0 41.0 39 35.550246297209384 38.0 35.0 40.0 26.0 41.0 40 35.38006755104458 38.0 35.0 40.0 25.0 41.0 41 35.25851189896108 38.0 34.0 40.0 25.0 41.0 42 34.985695307328996 38.0 34.0 40.0 24.0 41.0 43 34.61431835069085 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 10.0 13 7.0 14 13.0 15 27.0 16 60.0 17 154.0 18 325.0 19 858.0 20 1760.0 21 3436.0 22 6354.0 23 10999.0 24 18193.0 25 27658.0 26 41185.0 27 58104.0 28 79709.0 29 106040.0 30 134535.0 31 166749.0 32 205181.0 33 255421.0 34 320615.0 35 398995.0 36 529118.0 37 773927.0 38 1054796.0 39 1326333.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.04333396249588 20.692932572493472 13.912305368688646 23.351428096322007 2 18.193859107924805 23.51526999224355 35.50005561023997 22.790815289591684 3 19.221724728949894 24.40295071193787 32.92700422384227 23.44832033526997 4 13.178884194120673 16.165697502756057 36.77342142091952 33.881996882203744 5 12.531178868253726 38.80391974301185 34.926110837185895 13.738790551548519 6 32.07873975240945 37.96262919418045 13.985703639807948 15.972927413602156 7 26.271472888830598 33.37898686475263 21.444612744417874 18.904927501998888 8 27.477309391826854 34.44210249456306 19.068334659888134 19.012253453721957 9 24.98502870901281 14.450963904788022 21.50723313515317 39.056774251046 10 16.17651161130942 28.053011231094782 33.24789523393073 22.522581923665076 11 33.478107136116115 22.736726632740194 23.30909548042719 20.476070750716502 12 21.35496613934151 27.351760670916715 30.986478560350516 20.306794629391263 13 31.547852158637358 20.843768555615494 26.056694186791717 21.551685098955435 14 20.6023440350138 22.472876875305904 28.46824039419146 28.45653869548883 15 22.88316089328522 29.743979149963973 25.192942172958354 22.179917783792458 16 21.769543195389748 28.266069095089165 26.486106678192055 23.478281031329036 17 21.733405596455146 27.01255632121779 27.384510936016344 23.869527146310723 18 22.700371664789444 25.721402479383453 29.725339756829282 21.85288609899782 19 22.711765424052533 24.984920024504735 31.027072224116147 21.27624232732658 20 23.39698501928969 24.93269711837518 30.374222498200364 21.296095364134764 21 22.33292745707596 25.65852849146265 30.926720194994502 21.08182385646689 22 21.41139151311659 26.062671834735784 30.51205256852286 22.01388408362476 23 22.184120251437985 26.019053118828754 30.840533380091824 20.95629324964143 24 21.92831314760117 26.110982098574674 29.44372008232489 22.516984671499262 25 22.1101061014396 26.057581776940985 30.3385739795521 21.49373814206732 26 21.542954110140155 27.000764052091757 30.3226154709499 21.133666366818186 27 20.79759575376873 26.96837606868571 30.082875560223354 22.151152617322207 28 21.24533969886421 26.757890404715752 30.049599986668035 21.947169909752006 29 21.425592955504925 26.684166080072224 29.604881093713942 22.28535987070891 30 21.371848466262335 27.037970382022426 30.75617608774173 20.834005063973514 31 22.053191647378185 26.762346469546785 30.507723302284585 20.67673858079045 32 21.478377398259525 26.723364959317575 29.78565965881035 22.01259798361255 33 21.202862170291958 26.570771909981694 30.41092163376002 21.81544428596633 34 20.744539599743938 26.929104733101646 30.8083808797866 21.517974787367816 35 20.38660528648693 28.563810304957858 29.930391195395543 21.119193213159665 36 22.148489846874398 26.96352149399174 29.647720903979774 21.24026775515409 37 21.233764798754333 27.349532638501195 29.755825761344035 21.660876801400438 38 21.003389869806828 26.380247967327985 30.75652025535063 21.859841907514554 39 20.613248713990558 26.17747890343128 31.43851554351492 21.77075683906324 40 19.826753271313123 26.548527813995882 31.248879191010488 22.375839723680507 41 20.732729216533233 25.6210504502618 31.48137346786543 22.164846865339534 42 19.82372821917173 27.1233782912839 30.83172993493783 22.221163554606537 43 19.853670801146116 26.762237785038707 30.500676923344454 22.883414490470724 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3354.0 1 2412.5 2 1471.0 3 3881.5 4 6292.0 5 6292.0 6 8969.0 7 11646.0 8 11966.5 9 12287.0 10 18541.0 11 24795.0 12 24795.0 13 44819.0 14 64843.0 15 107876.0 16 150909.0 17 136512.0 18 122115.0 19 122115.0 20 124587.5 21 127060.0 22 102018.0 23 76976.0 24 88043.0 25 99110.0 26 99110.0 27 111747.5 28 124385.0 29 134877.0 30 145369.0 31 158994.0 32 172619.0 33 172619.0 34 191454.5 35 210290.0 36 228700.0 37 247110.0 38 262656.0 39 278202.0 40 278202.0 41 288300.0 42 298398.0 43 315019.0 44 331640.0 45 349526.5 46 367413.0 47 367413.0 48 447457.5 49 527502.0 50 497911.0 51 468320.0 52 429757.5 53 391195.0 54 391195.0 55 355746.5 56 320298.0 57 281417.0 58 242536.0 59 219954.5 60 197373.0 61 197373.0 62 175420.5 63 153468.0 64 133087.5 65 112707.0 66 95728.0 67 78749.0 68 78749.0 69 67537.0 70 56325.0 71 47554.0 72 38783.0 73 31548.5 74 24314.0 75 24314.0 76 19453.5 77 14593.0 78 11474.5 79 8356.0 80 6505.0 81 4654.0 82 4654.0 83 3484.5 84 2315.0 85 1821.0 86 1327.0 87 1017.0 88 707.0 89 707.0 90 589.0 91 471.0 92 324.5 93 178.0 94 124.0 95 70.0 96 70.0 97 50.0 98 30.0 99 20.5 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5520566.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.49723695853101 #Duplication Level Percentage of deduplicated Percentage of total 1 74.10224920192333 31.491408434942514 2 13.171639717012537 11.195165883725606 3 4.970024076882164 6.336368726545971 4 2.3961852711924925 4.07325013065637 5 1.3242124449229529 2.813768502766322 6 0.8205774045977292 2.092336344360364 7 0.5469881479703217 1.6271839456461947 8 0.3855180671237645 1.3106762120282789 9 0.2908524478062564 1.1124382854952126 >10 1.7247361399467531 13.716260786997248 >50 0.15517659800572617 4.578208461549235 >100 0.09941519993429035 7.881126731151452 >500 0.007643045724978483 2.2170613933596135 >1k 0.004099060248614651 3.643820178632458 >5k 2.9888980979432653E-4 0.8806108952730685 >10k+ 3.8428689830699125E-4 5.030315086870172 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 80632 1.4605748758370067 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 57530 1.0421032915827835 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 56417 1.021942315335058 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25427 0.46058683113289467 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 12607 0.228364265548134 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 12355 0.22379951620902638 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11710 0.2121159315910724 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10324 0.18700981022598046 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10216 0.18505348908064861 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9119 0.16518233818778727 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7707 0.1396052506210414 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7190 0.13024026884199916 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6864 0.12433507723664566 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6413 0.11616562504641734 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5947 0.10772446158600404 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 5.434225403699548E-5 0.0 0.0 0.0 0.0 7 5.434225403699548E-5 0.0 0.0 0.0 0.0 8 9.057042339499247E-5 0.0 0.0 0.0 0.0 9 9.057042339499247E-5 0.0 0.0 3.6228169357996986E-5 0.0 10 1.0868450807399097E-4 0.0 0.0 9.057042339499247E-5 0.0 11 1.0868450807399097E-4 0.0 0.0 1.2679859275298945E-4 0.0 12 1.0868450807399097E-4 0.0 0.0 1.9925493146898343E-4 0.0 13 1.0868450807399097E-4 0.0 0.0 2.3548310082698043E-4 0.0 14 1.4491267743198794E-4 0.0 0.0 3.441676089009714E-4 0.0 15 1.4491267743198794E-4 0.0 0.0 4.7096620165396085E-4 0.0 16 1.4491267743198794E-4 0.0 0.0 8.151338105549322E-4 0.0 17 1.4491267743198794E-4 0.0 0.0 0.0011955295888139007 0.0 18 1.4491267743198794E-4 0.0 0.0 0.0014128986049618826 0.0 19 1.4491267743198794E-4 0.0 0.0 0.0018295225525788478 0.0 20 1.6302676211098644E-4 0.0 0.0 0.0029888239720347516 0.0 21 1.6302676211098644E-4 0.0 0.0 0.0059595338593905044 0.0 22 1.6302676211098644E-4 0.0 0.0 0.009745377557301189 0.0 23 1.6302676211098644E-4 0.0 0.0 0.012353805751076972 0.0 24 1.9925493146898343E-4 0.0 0.0 0.015849824094123683 0.0 25 1.9925493146898343E-4 0.0 0.0 0.01825899735643048 0.0 26 1.9925493146898343E-4 0.0 0.0 0.024109846707746997 0.0 27 1.9925493146898343E-4 0.0 0.0 0.05955911042454705 0.0 28 1.9925493146898343E-4 0.0 0.0 0.14860795070650365 0.0 29 1.9925493146898343E-4 0.0 0.0 0.288358114004977 0.0 30 1.9925493146898343E-4 0.0 0.0 0.4666731635850382 0.0 31 1.9925493146898343E-4 0.0 0.0 0.7322256449791561 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20390 0.0 19.924475 1 ATTGGAC 1875 0.0 17.759998 3 GTATTGG 1935 0.0 17.209303 1 TTGGACC 2345 0.0 17.040512 4 GCGTAAG 85 5.3687405E-4 15.235294 1 TGGACCC 2615 0.0 14.644359 5 GGACCCT 2515 0.0 14.638171 6 TATTGGA 2310 0.0 14.575758 2 GTATTAG 1235 0.0 14.380568 1 TATACCG 435 0.0 14.034483 5 TATACAC 2210 0.0 13.979638 37 CTAATAC 1175 0.0 13.855319 3 ACGTTCG 510 0.0 13.784313 22 TAGGTCG 310 0.0 13.725806 21 CTAGTAC 805 0.0 13.559007 3 GACCCTC 2590 0.0 13.5 7 TAGTACT 855 0.0 13.415205 4 CGTTCGC 535 0.0 13.140186 23 CTGTGCG 565 0.0 12.769912 9 TATACTG 855 0.0 12.766082 5 >>END_MODULE