##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088540_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4433599 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.75430953498501 31.0 31.0 34.0 30.0 34.0 2 31.91555483479674 31.0 31.0 34.0 30.0 34.0 3 32.04626173905218 33.0 31.0 34.0 30.0 34.0 4 35.709339748588 37.0 35.0 37.0 35.0 37.0 5 35.61256329225986 37.0 35.0 37.0 33.0 37.0 6 35.65312447066142 37.0 35.0 37.0 33.0 37.0 7 35.528097827521165 37.0 35.0 37.0 33.0 37.0 8 35.552454788987454 37.0 35.0 37.0 33.0 37.0 9 37.17427263945161 39.0 37.0 39.0 33.0 39.0 10 37.027951783641235 39.0 37.0 39.0 33.0 39.0 11 37.08230063205987 39.0 37.0 39.0 33.0 39.0 12 36.94126194091978 39.0 37.0 39.0 33.0 39.0 13 37.00053568218506 39.0 37.0 39.0 33.0 39.0 14 38.06753520108607 40.0 37.0 41.0 33.0 41.0 15 38.06698711362936 40.0 37.0 41.0 33.0 41.0 16 37.96433461844429 40.0 37.0 41.0 33.0 41.0 17 37.96943634279961 40.0 37.0 41.0 33.0 41.0 18 37.92572287209556 40.0 37.0 41.0 33.0 41.0 19 37.9775293164763 40.0 37.0 41.0 33.0 41.0 20 37.87415506003136 40.0 37.0 41.0 32.0 41.0 21 37.73961515238523 40.0 37.0 41.0 32.0 41.0 22 37.6237560049973 39.0 37.0 41.0 32.0 41.0 23 37.476463252540434 39.0 36.0 41.0 32.0 41.0 24 37.64332543380671 39.0 37.0 41.0 32.0 41.0 25 37.599898863203464 40.0 37.0 41.0 32.0 41.0 26 37.41640775361056 39.0 36.0 41.0 32.0 41.0 27 37.37460604804359 39.0 36.0 41.0 32.0 41.0 28 37.245721139868536 39.0 36.0 41.0 31.0 41.0 29 37.03866272073771 39.0 36.0 41.0 31.0 41.0 30 36.91284011025805 39.0 36.0 41.0 31.0 41.0 31 36.70927569227619 39.0 35.0 40.0 30.0 41.0 32 36.56449782670918 39.0 35.0 40.0 30.0 41.0 33 36.41620408160504 39.0 35.0 40.0 30.0 41.0 34 36.24813430353083 38.0 35.0 40.0 30.0 41.0 35 36.05993031846137 38.0 35.0 40.0 29.0 41.0 36 36.003700379759195 38.0 35.0 40.0 29.0 41.0 37 35.88279544451359 38.0 35.0 40.0 28.0 41.0 38 35.75532563950867 38.0 35.0 40.0 27.0 41.0 39 35.63281252995591 38.0 35.0 40.0 26.0 41.0 40 35.47636446146799 38.0 35.0 40.0 26.0 41.0 41 35.36149773581237 38.0 34.0 40.0 25.0 41.0 42 35.113153219314604 38.0 34.0 40.0 24.0 41.0 43 34.750191210346266 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 2.0 13 11.0 14 16.0 15 19.0 16 53.0 17 132.0 18 288.0 19 599.0 20 1345.0 21 2758.0 22 5000.0 23 8808.0 24 14350.0 25 21859.0 26 32594.0 27 46496.0 28 63449.0 29 83606.0 30 107431.0 31 133457.0 32 164642.0 33 205442.0 34 256822.0 35 321858.0 36 423145.0 37 610170.0 38 850172.0 39 1079070.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.58601172546277 20.822925122456947 14.019490711722012 23.571572440358274 2 18.319045091809162 23.380215486335143 35.53361501570169 22.767124406154007 3 18.97573506309434 24.255666784479153 32.99718806324162 23.77141008918488 4 13.388693925634682 16.333502420945152 36.5867098039313 33.691093849488865 5 12.547639062531365 38.5283152581007 35.08431863143239 13.839727047935549 6 32.078002543757336 38.08463507863476 14.095726744795819 15.741635632812079 7 26.10398459581031 33.46867860625194 21.490058076970875 18.937278720966873 8 27.16395867104806 34.576559585113586 19.175730597196544 19.083751146641813 9 24.893342857574623 14.616838374422226 21.403582056022657 39.08623671198049 10 16.150445721410527 28.11499190612412 33.37809756813821 22.35646480432714 11 33.70126617224516 22.82096328513246 23.14341012797955 20.33436041464282 12 21.308873445704045 27.34534629766923 30.83368613174083 20.5120941248859 13 31.437213875228682 21.112802488452385 25.7317136709928 21.718269965326137 14 20.707759091428883 22.519650514175954 28.12579576998281 28.646794624412358 15 22.815301970250353 29.953475720289546 24.87590781214088 22.35531449731922 16 22.014034196597393 28.37947229778787 26.12584042896076 23.48065307665398 17 21.783499139186922 27.268884714201715 27.110187457187717 23.83742868942365 18 22.82051218434504 25.997637585176285 29.23205278600974 21.94979744446893 19 22.821076060329318 25.341150609245446 30.471948410309547 21.36582492011569 20 23.43601665373887 25.288281596959944 29.80650708374844 21.46919466555275 21 22.51926707850665 25.839053103359145 30.308943140775703 21.332736677358508 22 21.630778967606226 26.235232369909863 29.919056730209476 22.214931932274435 23 22.345142174562923 26.24208910187863 30.27741119573511 21.13535752782333 24 22.033837521165083 26.293086045896345 28.983315811826916 22.689760621111652 25 22.15423632132721 26.296379081644506 29.885742937058584 21.6636416599697 26 21.657664574536398 27.15419233900044 29.792477849259708 21.395665237203453 27 20.842164571040367 27.14079464561409 29.585445142873766 22.431595640471773 28 21.385898905155834 26.905635805132576 29.58706910570848 22.12139618400311 29 21.532326220752037 26.816092298829915 29.06938584206646 22.582195638351596 30 21.542633873744556 27.16472554238667 30.163282696518113 21.12935788735066 31 22.21937527503051 26.835602407885784 29.95221263808477 20.992809678998935 32 21.5950066751639 26.854097540169963 29.394246074126233 22.156649710539902 33 21.368396194603978 26.62780283016123 29.97079799052643 22.03300298470836 34 20.888154296317733 26.89158401560448 30.473369377789915 21.746892310287873 35 20.49783934000346 28.40832019314331 29.701400600279822 21.392439866573408 36 22.154822752350857 26.882449224659243 29.386780356094448 21.575947666895452 37 21.32283501507466 27.212429450656227 29.62640509437141 21.8383304398977 38 21.015522603645483 26.228172642586756 30.690935287562095 22.065369466205674 39 20.669032088828963 26.021884252500055 31.2991544792391 22.00992917943188 40 19.838645759348104 26.223120313767662 31.36546629498969 22.57276763189454 41 20.5874054013455 25.419416595862636 31.554545190036354 22.438632812755507 42 19.754695902809434 26.801408968199425 30.939942922217366 22.503952206773775 43 19.717412422729254 26.521343044330354 30.71660292236623 23.044641610574164 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1322.0 1 1289.0 2 1256.0 3 2738.0 4 4220.0 5 4220.0 6 6164.5 7 8109.0 8 8611.5 9 9114.0 10 13488.0 11 17862.0 12 17862.0 13 32103.0 14 46344.0 15 78010.5 16 109677.0 17 101241.0 18 92805.0 19 92805.0 20 94920.5 21 97036.0 22 79808.0 23 62580.0 24 70692.0 25 78804.0 26 78804.0 27 88960.0 28 99116.0 29 108447.0 30 117778.0 31 129663.0 32 141548.0 33 141548.0 34 156933.0 35 172318.0 36 188377.0 37 204436.0 38 216409.5 39 228383.0 40 228383.0 41 238969.5 42 249556.0 43 260978.0 44 272400.0 45 285575.0 46 298750.0 47 298750.0 48 361134.0 49 423518.0 50 398927.5 51 374337.0 52 342603.5 53 310870.0 54 310870.0 55 283137.5 56 255405.0 57 225961.5 58 196518.0 59 177750.5 60 158983.0 61 158983.0 62 141284.0 63 123585.0 64 107285.5 65 90986.0 66 77343.0 67 63700.0 68 63700.0 69 54524.0 70 45348.0 71 38378.0 72 31408.0 73 25427.0 74 19446.0 75 19446.0 76 15583.0 77 11720.0 78 9146.0 79 6572.0 80 5159.0 81 3746.0 82 3746.0 83 2856.0 84 1966.0 85 1501.5 86 1037.0 87 790.0 88 543.0 89 543.0 90 419.5 91 296.0 92 202.5 93 109.0 94 86.5 95 64.0 96 64.0 97 43.5 98 23.0 99 14.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4433599.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.01692686247508 #Duplication Level Percentage of deduplicated Percentage of total 1 75.69858322082104 34.83416167665505 2 12.793243761909286 11.774115250511905 3 4.567123862471992 6.30495014253715 4 2.104077733532706 3.8729276470774745 5 1.1757510143950105 2.705222421894804 6 0.7367137167230348 2.034078073261565 7 0.4966139461313016 1.5996853346606472 8 0.36275262275271275 1.335420872830608 9 0.27587374002006526 1.1425375546002727 >10 1.56128051999363 13.535629762470377 >50 0.1406934500784312 4.486537215181185 >100 0.07828733720939345 6.660851077850154 >500 0.004970013607075024 1.5278383089331822 >1k 0.003395355664115001 3.1037271377777467 >5k 4.4287247792804043E-4 1.491834235266753 >10k+ 1.968322124124624E-4 3.590483288491043 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 58127 1.311056773515151 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 42158 0.9508753498004668 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 40879 0.922027454445023 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17398 0.39241257497577026 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9827 0.22164837189831554 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9091 0.20504786292129712 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7990 0.1802147645738823 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7791 0.17572631173906345 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7623 0.17193706512474402 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6810 0.15359981811616252 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6420 0.14480335276149242 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5320 0.11999280945344853 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5010 0.11300074724845437 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4685 0.10567035945289595 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 2.2555039370948975E-5 0.0 0.0 0.0 0.0 7 4.511007874189795E-5 0.0 0.0 0.0 0.0 8 4.511007874189795E-5 0.0 0.0 0.0 0.0 9 4.511007874189795E-5 0.0 0.0 4.511007874189795E-5 0.0 10 6.766511811284692E-5 0.0 0.0 4.511007874189795E-5 0.0 11 6.766511811284692E-5 0.0 0.0 1.3533023622569384E-4 0.0 12 6.766511811284692E-5 0.0 0.0 2.0299535433854077E-4 0.0 13 6.766511811284692E-5 0.0 0.0 2.2555039370948974E-4 0.0 14 9.02201574837959E-5 0.0 0.0 2.932155118223367E-4 0.0 15 9.02201574837959E-5 0.0 0.0 4.0599070867708154E-4 0.0 16 9.02201574837959E-5 0.0 0.0 6.992062204994182E-4 0.0 17 9.02201574837959E-5 0.0 0.0 9.92421732321755E-4 0.0 18 9.02201574837959E-5 0.0 0.0 0.0011277519685474486 0.0 19 1.1277519685474487E-4 0.0 0.0 0.00175929307093402 0.0 20 1.1277519685474487E-4 0.0 0.0 0.0030223752757071627 0.0 21 1.1277519685474487E-4 0.0 0.0 0.005368099370285856 0.0 22 1.3533023622569384E-4 0.0 0.0 0.009179901023976233 0.0 23 1.3533023622569384E-4 0.0 0.0 0.011593290236667773 0.0 24 1.3533023622569384E-4 0.0 0.0 0.015450201969100047 0.0 25 1.3533023622569384E-4 0.0 0.0 0.017863591181791587 0.0 26 1.3533023622569384E-4 0.0 0.0 0.02287080992214226 0.0 27 1.3533023622569384E-4 0.0 0.0 0.06405631181349508 0.0 28 1.3533023622569384E-4 0.0 0.0 0.17015521701443906 0.0 29 1.3533023622569384E-4 0.0 0.0 0.3286043685953556 0.0 30 1.3533023622569384E-4 0.0 0.0 0.5373963680522302 0.0 31 1.3533023622569384E-4 0.0 0.0 0.8457237562531027 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14325 0.0 21.877138 1 GTATTGG 1280 0.0 19.367188 1 ATTGGAC 1350 0.0 17.677778 3 CGTTCGC 300 0.0 16.65 23 GGACCCT 1760 0.0 16.397728 6 TTGGACC 1965 0.0 15.816794 4 GACCCTC 1835 0.0 15.626702 7 TATACCG 220 1.8189894E-12 15.136364 5 TGGACCC 2015 0.0 14.96526 5 CGAACTA 310 0.0 14.919355 24 ACGTTCG 300 0.0 14.8 22 TATTGGA 1605 0.0 14.17757 2 GTATTAG 825 0.0 14.127274 1 GTATCAA 22450 0.0 13.967707 2 GTATAGA 560 0.0 13.875 1 TAATACT 960 0.0 13.682292 4 TATACAC 2250 0.0 13.566667 37 CCCTCGC 2015 0.0 13.496277 9 CTAATAC 980 0.0 13.214285 3 ACCCTCG 2135 0.0 12.997658 8 >>END_MODULE