##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088537_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5299778 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.745078378754734 31.0 31.0 34.0 30.0 34.0 2 31.89308212532676 31.0 31.0 34.0 30.0 34.0 3 32.013445280160795 33.0 31.0 34.0 30.0 34.0 4 35.68053190152493 37.0 35.0 37.0 35.0 37.0 5 35.59968379807607 37.0 35.0 37.0 33.0 37.0 6 35.65128916720663 37.0 35.0 37.0 33.0 37.0 7 35.51333697373739 37.0 35.0 37.0 33.0 37.0 8 35.553091469114364 37.0 35.0 37.0 33.0 37.0 9 37.160634652998674 39.0 37.0 39.0 33.0 39.0 10 37.019355905096404 39.0 37.0 39.0 33.0 39.0 11 37.08402672715725 39.0 37.0 39.0 33.0 39.0 12 36.938790077622116 39.0 37.0 39.0 33.0 39.0 13 36.99928506439326 39.0 37.0 39.0 33.0 39.0 14 38.01566895820919 40.0 37.0 41.0 33.0 41.0 15 38.02193091861584 40.0 37.0 41.0 33.0 41.0 16 37.91699935355783 40.0 37.0 41.0 33.0 41.0 17 37.95742727336881 40.0 37.0 41.0 33.0 41.0 18 37.9292543951841 40.0 37.0 41.0 33.0 41.0 19 37.998035955468325 40.0 37.0 41.0 33.0 41.0 20 37.89622093604675 40.0 37.0 41.0 32.0 41.0 21 37.769996214935794 40.0 37.0 41.0 32.0 41.0 22 37.65118897433062 40.0 37.0 41.0 32.0 41.0 23 37.49095471546167 39.0 36.0 41.0 32.0 41.0 24 37.6358432372073 39.0 37.0 41.0 32.0 41.0 25 37.58827426356349 40.0 37.0 41.0 32.0 41.0 26 37.38057178998818 39.0 36.0 41.0 32.0 41.0 27 37.33781075358251 39.0 36.0 41.0 31.0 41.0 28 37.1898662547752 39.0 36.0 41.0 31.0 41.0 29 36.96190444203512 39.0 36.0 41.0 31.0 41.0 30 36.79841419772677 39.0 35.0 41.0 30.0 41.0 31 36.5536284727398 39.0 35.0 40.0 30.0 41.0 32 36.39994392217938 38.0 35.0 40.0 30.0 41.0 33 36.23241879188147 38.0 35.0 40.0 30.0 41.0 34 36.03230191906152 38.0 35.0 40.0 30.0 41.0 35 35.8266227377826 38.0 35.0 40.0 29.0 41.0 36 35.7492521384858 38.0 35.0 40.0 27.0 41.0 37 35.59746427114494 38.0 35.0 40.0 27.0 41.0 38 35.449223156139745 38.0 35.0 40.0 26.0 41.0 39 35.29459233952819 38.0 34.0 40.0 25.0 41.0 40 35.10148538297265 38.0 34.0 40.0 24.0 41.0 41 34.95345163514396 38.0 34.0 40.0 24.0 41.0 42 34.647564860263955 38.0 33.0 40.0 23.0 41.0 43 34.25811081143399 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 8.0 13 7.0 14 21.0 15 39.0 16 68.0 17 148.0 18 360.0 19 808.0 20 1772.0 21 3388.0 22 6522.0 23 11050.0 24 18396.0 25 28025.0 26 40762.0 27 58175.0 28 80224.0 29 104969.0 30 133321.0 31 165201.0 32 202896.0 33 251744.0 34 315368.0 35 393034.0 36 518155.0 37 761228.0 38 992869.0 39 1211218.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.99953281061962 20.721584941859827 14.475681811577768 22.803200435942788 2 18.438677997455745 23.76173115175768 35.35861313436148 22.440977716425103 3 19.249277988625185 24.20893856308698 33.656409759050284 22.885373689237547 4 13.116606016327475 16.17218683499573 36.44237551082328 34.26883163785351 5 12.325855913209951 38.88300604289462 34.80791082192499 13.983227221970429 6 31.93703585319989 37.92609803655927 13.519830453275592 16.617035656965253 7 25.634243547559915 33.94345951849304 21.07599601341792 19.346300920529124 8 27.846222992736674 33.96774355454134 18.684990201476364 19.501043251245616 9 24.76809405978892 14.415037761959084 21.690059470415555 39.12680870783644 10 16.56127860450004 28.22016318419375 32.604573248162474 22.61398496314374 11 33.383134161468654 22.825371175924726 23.221350026359595 20.57014463624703 12 21.714343506463855 27.78099384540258 30.39687700126307 20.10778564687049 13 32.178008210909965 20.87527062454314 25.93629393533088 21.010427229216017 14 20.573522136210233 22.86635402464028 28.514043418422432 28.046080420727055 15 22.65810001852908 30.098675831327277 25.382138648071674 21.861085502071973 16 21.566186357239868 28.18878451135123 26.683532781939167 23.56149634946973 17 21.635642096706693 27.021565808982945 27.274746225219243 24.06804586909112 18 22.841107684133185 25.359420715358265 30.06020252169053 21.73926907881802 19 22.663722895562795 24.66429725924369 31.641476303347044 21.03050354184647 20 23.381243516237852 24.58436938301944 30.920880082146834 21.11350701859587 21 22.305085231871978 25.35777913716386 31.536924754206687 20.80021087675748 22 21.080222605550645 25.972389786892965 31.021922050319844 21.92546555723655 23 22.111209186498 25.86353617076036 31.59826694627586 20.426987696465776 24 21.61590542094405 26.081186796880928 29.84819364131856 22.454714140856467 25 21.783421871633113 26.00984418592628 31.047923139422068 21.15881080301854 26 21.170849043110863 27.033868211083558 30.94890012374103 20.846382622064546 27 20.236923131497207 26.97879043235396 30.70660695598948 22.077679480159357 28 20.947160428229257 26.70372230685889 30.60041382865471 21.74870343625714 29 21.067750385016126 26.768064624593706 29.807437217181548 22.356747773208614 30 21.00078531591323 27.12604188326379 31.492904042395736 20.38026875842724 31 21.908729007139545 26.849785028731393 31.060697259394637 20.180788704734425 32 21.18528360999272 26.78685786461244 30.16913161268264 21.858726912712193 33 20.863836183326924 26.567754347446254 30.91178536157552 21.6566241076513 34 20.247791511267078 27.12172094755667 31.45827995059416 21.172207590582097 35 19.729449044846785 29.117785688381666 30.433840813709555 20.718924453061994 36 21.923522079604087 27.12798536089625 30.030352214753147 20.918140344746515 37 20.906687034815423 27.805787336752598 30.04620193525087 21.241323693181112 38 20.613599286611628 26.39782270125277 31.38701281449902 21.601565197636578 39 20.238772265555273 26.212097940706197 32.02456782152007 21.524561972218457 40 19.150519134952447 26.539413537699126 31.98411329682111 22.325954030527317 41 20.27109437414171 25.58590190004185 32.20744340612003 21.93556031969641 42 19.282845432393582 27.3789581374918 31.371597074443496 21.966599355671125 43 19.308016298041164 27.04856693997371 31.051847832116742 22.591568929868384 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1323.0 1 1366.5 2 1410.0 3 3365.5 4 5321.0 5 5321.0 6 8212.5 7 11104.0 8 11855.0 9 12606.0 10 18985.5 11 25365.0 12 25365.0 13 46675.5 14 67986.0 15 119142.5 16 170299.0 17 154109.5 18 137920.0 19 137920.0 20 138907.5 21 139895.0 22 108583.5 23 77272.0 24 85770.0 25 94268.0 26 94268.0 27 103821.5 28 113375.0 29 121307.5 30 129240.0 31 140559.0 32 151878.0 33 151878.0 34 170114.0 35 188350.0 36 207748.0 37 227146.0 38 240159.5 39 253173.0 40 253173.0 41 264583.0 42 275993.0 43 293553.0 44 311113.0 45 330937.5 46 350762.0 47 350762.0 48 447300.0 49 543838.0 50 510052.0 51 476266.0 52 430777.5 53 385289.0 54 385289.0 55 344464.0 56 303639.0 57 263560.0 58 223481.0 59 201263.0 60 179045.0 61 179045.0 62 157819.0 63 136593.0 64 118176.5 65 99760.0 66 84698.5 67 69637.0 68 69637.0 69 59610.5 70 49584.0 71 42045.0 72 34506.0 73 28428.5 74 22351.0 75 22351.0 76 17845.0 77 13339.0 78 10462.5 79 7586.0 80 5992.0 81 4398.0 82 4398.0 83 3302.0 84 2206.0 85 1710.0 86 1214.0 87 935.0 88 656.0 89 656.0 90 503.0 91 350.0 92 248.5 93 147.0 94 100.5 95 54.0 96 54.0 97 40.5 98 27.0 99 20.0 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5299778.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.944977726145055 #Duplication Level Percentage of deduplicated Percentage of total 1 73.32296830012417 28.555613672631765 2 13.312300535834687 10.368944957036618 3 5.127827652825352 5.991094011683821 4 2.4790802831433827 3.8619090563337766 5 1.4167391381794945 2.758743709007918 6 0.857399915393693 2.003485236444362 7 0.5925286796106992 1.6153211360678574 8 0.4199671370850251 1.3084488639591367 9 0.31826904076964446 1.1155482633325822 >10 1.8271209369425803 13.530526854381442 >50 0.1815263026037602 4.919353804894843 >100 0.12740736086592827 9.280491393480121 >500 0.010303516464207085 2.7007755909935214 >1k 0.0056377719870904655 4.613433035158199 >5k 3.888118611786166E-4 0.980613358136462 >10k+ 5.346163091205977E-4 6.395697056457542 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 93113 1.7569226484581053 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 66482 1.25442990253554 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 65504 1.2359762993846157 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26649 0.5028323827903735 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 15087 0.284672301368095 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 14788 0.2790305556194995 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 12183 0.2298775533616691 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11847 0.22353766516257847 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11618 0.21921672945546022 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 10372 0.19570631071716588 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10256 0.19351753979128938 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8174 0.15423287541478153 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 8154 0.1538555011172166 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7360 0.1388737415038894 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6031 0.11379721943070067 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5923 0.11175939822385013 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5713 0.10779696809941851 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 5342 0.10079667487958931 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.8868714878245843E-5 2 0.0 0.0 0.0 0.0 1.8868714878245843E-5 3 0.0 0.0 0.0 0.0 1.8868714878245843E-5 4 0.0 0.0 0.0 1.8868714878245843E-5 1.8868714878245843E-5 5 0.0 0.0 0.0 1.8868714878245843E-5 3.7737429756491686E-5 6 3.7737429756491686E-5 0.0 0.0 1.8868714878245843E-5 3.7737429756491686E-5 7 5.660614463473753E-5 0.0 0.0 1.8868714878245843E-5 3.7737429756491686E-5 8 9.434357439122922E-5 0.0 0.0 1.8868714878245843E-5 3.7737429756491686E-5 9 1.1321228926947506E-4 0.0 0.0 5.660614463473753E-5 3.7737429756491686E-5 10 1.1321228926947506E-4 0.0 0.0 1.3208100414772092E-4 9.434357439122922E-5 11 1.1321228926947506E-4 0.0 0.0 2.2642457853895012E-4 9.434357439122922E-5 12 1.1321228926947506E-4 0.0 0.0 2.45293293417196E-4 9.434357439122922E-5 13 1.1321228926947506E-4 0.0 0.0 2.6416200829544183E-4 9.434357439122922E-5 14 1.5094971902596674E-4 0.0 0.0 3.018994380519335E-4 9.434357439122922E-5 15 1.5094971902596674E-4 0.0 0.0 4.339804421996544E-4 1.5094971902596674E-4 16 1.5094971902596674E-4 0.0 0.0 8.113547397645712E-4 1.5094971902596674E-4 17 1.5094971902596674E-4 0.0 0.0 0.0011698603224512424 1.5094971902596674E-4 18 1.5094971902596674E-4 0.0 0.0 0.0014906284753814216 1.5094971902596674E-4 19 1.698184339042126E-4 0.0 0.0 0.0021321647812417802 1.5094971902596674E-4 20 1.698184339042126E-4 0.0 0.0 0.003245418959058285 1.5094971902596674E-4 21 1.698184339042126E-4 0.0 0.0 0.005773826752743228 1.5094971902596674E-4 22 1.698184339042126E-4 0.0 0.0 0.009547569728392397 1.8868714878245843E-4 23 1.698184339042126E-4 0.0 0.0 0.011830684228660144 1.8868714878245843E-4 24 1.698184339042126E-4 0.0 0.0 0.015510083629918084 1.8868714878245843E-4 25 1.698184339042126E-4 0.0 0.0 0.01811396628311601 1.8868714878245843E-4 26 1.698184339042126E-4 0.0 0.0 0.023887793035859237 1.8868714878245843E-4 27 1.698184339042126E-4 0.0 0.0 0.06088934291209934 1.8868714878245843E-4 28 1.698184339042126E-4 0.0 0.0 0.1592519535723949 1.8868714878245843E-4 29 1.698184339042126E-4 0.0 0.0 0.3199567981904148 2.075558636607043E-4 30 1.698184339042126E-4 0.0 0.0 0.5313241422565247 2.075558636607043E-4 31 1.698184339042126E-4 0.0 0.0 0.8244684966049521 2.075558636607043E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23070 0.0 20.92176 1 GTATTGG 1745 0.0 19.719198 1 ATTGGAC 1840 0.0 18.298914 3 TTGGACC 2610 0.0 16.444445 4 GGACCCT 2505 0.0 16.39521 6 TATACCG 375 0.0 15.786668 5 GACCCTC 2615 0.0 15.281072 7 TGGACCC 2840 0.0 15.177816 5 TATACTG 645 0.0 14.627906 5 CGTTCGC 545 0.0 14.59633 23 TATTGGA 2335 0.0 14.578158 2 TAGATGT 990 0.0 14.202021 4 CCGAGTT 520 0.0 13.875 13 TACACTG 945 0.0 13.703704 5 ATACTGG 1005 0.0 13.43781 6 GTATCAA 35960 0.0 13.432564 2 TATACAC 2490 0.0 13.373494 37 TACGTTA 180 5.1706593E-8 13.361111 19 CTCTAAT 835 0.0 13.293413 1 GGACCGT 645 0.0 13.193798 6 >>END_MODULE