##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088533_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1331908 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.77649357162807 31.0 31.0 34.0 30.0 34.0 2 31.943821194857303 31.0 31.0 34.0 30.0 34.0 3 32.07008667265307 33.0 31.0 34.0 30.0 34.0 4 35.72862915456623 37.0 35.0 37.0 35.0 37.0 5 35.634734531213866 37.0 35.0 37.0 33.0 37.0 6 35.67924661463104 37.0 35.0 37.0 33.0 37.0 7 35.53919039453176 37.0 35.0 37.0 33.0 37.0 8 35.57081194797238 37.0 35.0 37.0 33.0 37.0 9 37.19011523318427 39.0 37.0 39.0 33.0 39.0 10 37.05318685674987 39.0 37.0 39.0 33.0 39.0 11 37.115667898984015 39.0 37.0 39.0 33.0 39.0 12 36.97027422314454 39.0 37.0 39.0 33.0 39.0 13 37.02229733585202 39.0 37.0 39.0 33.0 39.0 14 38.069847166621116 40.0 37.0 41.0 33.0 41.0 15 38.07621697594729 40.0 37.0 41.0 33.0 41.0 16 37.984408082239916 40.0 37.0 41.0 33.0 41.0 17 38.006173099042876 40.0 37.0 41.0 33.0 41.0 18 37.97754424479769 40.0 37.0 41.0 33.0 41.0 19 38.037593437384565 40.0 37.0 41.0 33.0 41.0 20 37.935265048336674 40.0 37.0 41.0 32.0 41.0 21 37.80239776320887 40.0 37.0 41.0 32.0 41.0 22 37.689887739994056 40.0 37.0 41.0 32.0 41.0 23 37.508021575063744 39.0 36.0 41.0 32.0 41.0 24 37.65439504830664 40.0 37.0 41.0 32.0 41.0 25 37.620018800097306 40.0 37.0 41.0 32.0 41.0 26 37.418678317121 39.0 36.0 41.0 32.0 41.0 27 37.372618078726155 39.0 36.0 41.0 32.0 41.0 28 37.223881829675925 39.0 36.0 41.0 31.0 41.0 29 37.009356502100744 39.0 36.0 41.0 31.0 41.0 30 36.86041453313592 39.0 35.0 41.0 30.0 41.0 31 36.642962576994805 39.0 35.0 40.0 30.0 41.0 32 36.48377590644399 39.0 35.0 40.0 30.0 41.0 33 36.33019022334876 38.0 35.0 40.0 30.0 41.0 34 36.134372644356816 38.0 35.0 40.0 30.0 41.0 35 35.95436096186824 38.0 35.0 40.0 29.0 41.0 36 35.897742937199865 38.0 35.0 40.0 28.0 41.0 37 35.763803505947855 38.0 35.0 40.0 27.0 41.0 38 35.63131387453188 38.0 35.0 40.0 27.0 41.0 39 35.49006387828589 38.0 35.0 40.0 26.0 41.0 40 35.3243474774534 38.0 34.0 40.0 25.0 41.0 41 35.20769302384249 38.0 34.0 40.0 24.0 41.0 42 34.94383621090946 38.0 34.0 40.0 23.0 41.0 43 34.57433396300645 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 6.0 15 5.0 16 11.0 17 29.0 18 95.0 19 214.0 20 423.0 21 828.0 22 1622.0 23 2651.0 24 4340.0 25 6756.0 26 9966.0 27 14263.0 28 19146.0 29 25742.0 30 32507.0 31 40125.0 32 49579.0 33 61912.0 34 77658.0 35 96919.0 36 127746.0 37 186042.0 38 252234.0 39 321087.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.2039720461173 21.184270985683696 14.632767428380939 22.978989539818066 2 18.15936235836109 23.633238932418756 35.90142862720248 22.305970082017677 3 18.843568775020497 24.740672779200963 33.247942050051506 23.16781639572703 4 13.389288149031314 16.555197506134057 36.594269273853754 33.46124507098088 5 12.330356150725125 38.80425675046625 34.96172408304478 13.90366301576385 6 31.56929757911207 38.42262378482598 14.091063346717641 15.917015289344308 7 25.286731515990596 33.981175877012525 21.71824180048472 19.01385080651216 8 26.894950702300758 34.805256819540084 19.359069845665015 18.940722632494136 9 24.675728353610012 14.72173753742751 22.026070869759774 38.57646323920271 10 16.183550215180027 28.426963423900148 33.12781363277343 22.26167272814639 11 33.2792505188046 22.999936932580926 23.503800562801636 20.21701198581283 12 21.122555011307085 27.864462109995586 30.97969229105914 20.033290587638184 13 31.523348459503207 21.505464341380936 26.072521525510773 20.898665673605084 14 20.374530372968703 22.96134567853035 28.623298305888994 28.04082564261195 15 22.490817684104307 30.280019340675178 25.416094805346916 21.813068169873596 16 21.501710328340998 28.652429447078926 26.60731822318058 23.238542001399495 17 21.39194298705316 27.44979382960385 27.63456635142968 23.523696831913316 18 22.719437078236634 26.001270358012718 29.86467533793625 21.414617225814396 19 22.663352123419937 25.434414388981825 31.12234478657685 20.77988870102139 20 23.248527676085736 25.18537316391222 30.61607858801058 20.95002057199146 21 22.09094021508993 25.858317541451814 31.156806626283494 20.893935617174762 22 21.184946708030886 26.289278238436893 30.753325304750778 21.772449748781447 23 21.93041861750211 26.246857891085572 31.1752012901792 20.64752220123312 24 21.71201013883842 26.375094976529912 29.837045801962297 22.075849082669375 25 21.620111899620696 26.47893097721464 30.68162365568793 21.219333467476734 26 21.158893857533702 27.362775807338046 30.61022232766828 20.868108007459973 27 20.399757340597098 27.23558984554489 30.368313727374563 21.996339086483452 28 20.818104553767977 27.04060640825042 30.35607564486436 21.785213393117242 29 21.02547623409425 26.947807205903114 29.697846998441335 22.32886956156131 30 21.08824333212204 27.196247788886318 31.121819224751256 20.593689654240382 31 21.750225991585005 26.904035413857414 30.835688350847057 20.510050243710527 32 21.016766923841587 26.929487622268205 30.163419695654653 21.890325758235555 33 21.0097844595873 26.505584469798215 30.799349504620437 21.685281565994046 34 20.248770936130725 26.751397243653464 31.48107827267349 21.51875354754232 35 19.901449649675502 28.300603344975777 30.60519195019476 21.19275505515396 36 21.697895049808245 26.497625962153542 30.510365580805882 21.29411340723233 37 20.80091117404505 26.95035993477027 30.55699042276193 21.691738468422745 38 20.394351561819583 25.820176768966025 31.827573676259924 21.957897992954468 39 20.022779351126356 25.506416359087865 32.44585962393799 22.024944665847794 40 19.06392934046496 25.805461037849458 32.61156175952093 22.519047862164655 41 19.86803893362004 25.0871681827874 32.68243752571499 22.362355357877572 42 19.035549001883012 26.61415052691327 32.007390900873034 22.342909570330683 43 19.05829832090505 26.467443697312426 31.6735840613616 22.80067392042093 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 763.0 1 661.0 2 559.0 3 1111.5 4 1664.0 5 1664.0 6 2317.5 7 2971.0 8 3089.0 9 3207.0 10 4853.0 11 6499.0 12 6499.0 13 11062.5 14 15626.0 15 26749.0 16 37872.0 17 34945.0 18 32018.0 19 32018.0 20 32636.0 21 33254.0 22 27174.0 23 21094.0 24 23516.0 25 25938.0 26 25938.0 27 28843.0 28 31748.0 29 34053.0 30 36358.0 31 39409.5 32 42461.0 33 42461.0 34 47027.5 35 51594.0 36 56058.0 37 60522.0 38 63850.5 39 67179.0 40 67179.0 41 69725.0 42 72271.0 43 75584.5 44 78898.0 45 83797.5 46 88697.0 47 88697.0 48 110306.0 49 131915.0 50 121952.0 51 111989.0 52 101927.0 53 91865.0 54 91865.0 55 83207.5 56 74550.0 57 65311.5 58 56073.0 59 50601.0 60 45129.0 61 45129.0 62 39696.5 63 34264.0 64 29400.5 65 24537.0 66 20848.5 67 17160.0 68 17160.0 69 14685.5 70 12211.0 71 10342.0 72 8473.0 73 6912.5 74 5352.0 75 5352.0 76 4330.0 77 3308.0 78 2556.5 79 1805.0 80 1425.5 81 1046.0 82 1046.0 83 781.5 84 517.0 85 386.0 86 255.0 87 194.0 88 133.0 89 133.0 90 106.0 91 79.0 92 54.0 93 29.0 94 20.0 95 11.0 96 11.0 97 11.0 98 11.0 99 7.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1331908.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.23342011104431 #Duplication Level Percentage of deduplicated Percentage of total 1 82.9326911480214 47.46521553414195 2 9.950137696670748 11.389608219125913 3 2.8454086807219197 4.885574112341098 4 1.2780384330927403 2.9258604223703037 5 0.7056275376718393 2.0192738652747058 6 0.45266872529309476 1.5544667595498358 7 0.311231156958083 1.2468976490479835 8 0.22518781782227176 1.0310615185049112 9 0.16490658840832179 0.8494351248107296 >10 1.0073163367716482 10.838719715187706 >50 0.07798600721601355 3.0844118796142266 >100 0.04169694733127744 4.388819320078972 >500 0.003814533270350865 1.533952954145588 >1k 0.002762248230254074 2.7042169251012793 >5k 1.3153563001209879E-4 0.4294857481056429 >10k+ 3.9460689003629633E-4 3.6530002525991616 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19742 1.4822345086897895 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14432 1.0835583238481936 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 14350 1.0774017424626925 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5705 0.42833288785711926 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3419 0.2566994116710764 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2770 0.20797232241265914 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2665 0.20008889502878577 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2577 0.1934818320784919 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2575 0.19333167155689432 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2163 0.16239860410779122 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2137 0.1604465173270226 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1789 0.1343185865690423 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1690 0.1268856407499617 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1430 0.1073647729422753 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1411 0.10593824798709821 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 7.508026079879392E-5 0.0 10 0.0 0.0 0.0 1.5016052159758783E-4 0.0 11 0.0 0.0 0.0 6.757223471891452E-4 0.0 12 0.0 0.0 0.0 8.25882868786733E-4 0.0 13 0.0 7.508026079879392E-5 0.0 8.25882868786733E-4 0.0 14 0.0 7.508026079879392E-5 0.0 9.00963129585527E-4 0.0 15 0.0 7.508026079879392E-5 0.0 0.0010511236511831148 0.0 16 0.0 7.508026079879392E-5 0.0 0.0012763644335794964 0.0 17 0.0 7.508026079879392E-5 0.0 0.0021022473023662295 0.0 18 0.0 7.508026079879392E-5 0.0 0.0024025683455614053 0.0 19 0.0 7.508026079879392E-5 0.0 0.0030782906927505505 0.0 20 0.0 7.508026079879392E-5 0.0 0.006607062950293864 0.0 21 0.0 7.508026079879392E-5 0.0 0.012238082510203408 0.0 22 0.0 7.508026079879392E-5 0.0 0.01959594806848521 0.0 23 0.0 7.508026079879392E-5 0.0 0.02455124528120561 0.0 24 0.0 1.5016052159758783E-4 0.0 0.03235959240428018 0.0 25 0.0 1.5016052159758783E-4 0.0 0.0370145685738054 0.0 26 0.0 1.5016052159758783E-4 0.0 0.04429735387128841 0.0 27 0.0 1.5016052159758783E-4 0.0 0.10683921111668374 0.0 28 0.0 1.5016052159758783E-4 0.0 0.26593428374932804 0.0 29 0.0 1.5016052159758783E-4 0.0 0.4874961333665689 0.0 30 0.0 1.5016052159758783E-4 0.0 0.792397072470471 0.0 31 7.508026079879392E-5 1.5016052159758783E-4 0.0 1.2402508281352767 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTGG 375 0.0 23.186665 1 GGTATCA 4320 0.0 22.996529 1 ATTGGAC 395 0.0 21.075949 3 TCTATAC 125 1.8189894E-11 20.72 3 ACGTTCG 155 0.0 20.290321 22 CGCACTA 65 6.903184E-5 19.923077 29 CGTTCGC 180 0.0 19.527779 23 TAAACGT 95 1.6766171E-7 19.473684 4 TTGGACC 565 0.0 19.318584 4 CGTCTTA 50 0.0070354533 18.5 33 GACCCTC 575 0.0 18.33913 7 GGACCCT 595 0.0 18.033613 6 ACCCTCG 570 0.0 17.850876 8 TAGGTCG 65 0.0015801124 17.076923 21 TGGACCC 670 0.0 16.843285 5 TATTGGA 555 0.0 16.666666 2 TTCGTTA 185 1.8189894E-11 16.000002 30 CGCGCAA 70 0.0025927837 15.857142 9 ATTATAC 225 0.0 15.622222 3 CAGTTCG 215 0.0 15.488372 13 >>END_MODULE