##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088531_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 840900 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76055178974908 31.0 31.0 34.0 30.0 34.0 2 31.91782257105482 31.0 31.0 34.0 30.0 34.0 3 32.03264954215721 33.0 31.0 34.0 30.0 34.0 4 35.6975288381496 37.0 35.0 37.0 35.0 37.0 5 35.61922582946843 37.0 35.0 37.0 33.0 37.0 6 35.681392555595195 37.0 35.0 37.0 33.0 37.0 7 35.5196230229516 37.0 35.0 37.0 33.0 37.0 8 35.574083719823996 37.0 35.0 37.0 33.0 37.0 9 37.17099060530384 39.0 37.0 39.0 33.0 39.0 10 37.05209894161018 39.0 37.0 39.0 33.0 39.0 11 37.10962540135569 39.0 37.0 39.0 33.0 39.0 12 36.96223332144131 39.0 37.0 39.0 33.0 39.0 13 37.01142585325247 39.0 37.0 39.0 33.0 39.0 14 38.01058270900226 40.0 37.0 41.0 33.0 41.0 15 38.022207158996316 40.0 37.0 41.0 33.0 41.0 16 37.92250683791176 40.0 37.0 41.0 33.0 41.0 17 37.99192769651564 40.0 37.0 41.0 33.0 41.0 18 37.96696515638007 40.0 37.0 41.0 33.0 41.0 19 38.04213580687359 40.0 37.0 41.0 33.0 41.0 20 37.94184445237246 40.0 37.0 41.0 33.0 41.0 21 37.8188559876323 40.0 37.0 41.0 32.0 41.0 22 37.71208823879177 40.0 37.0 41.0 32.0 41.0 23 37.523320252110835 39.0 36.0 41.0 32.0 41.0 24 37.65766321798073 40.0 37.0 41.0 32.0 41.0 25 37.605465572600785 40.0 37.0 41.0 32.0 41.0 26 37.398559876322985 39.0 36.0 41.0 32.0 41.0 27 37.35764775835415 39.0 36.0 41.0 32.0 41.0 28 37.17933285765252 39.0 36.0 41.0 31.0 41.0 29 36.93874895944821 39.0 35.0 41.0 31.0 41.0 30 36.75534784159829 39.0 35.0 41.0 30.0 41.0 31 36.4824711618504 39.0 35.0 40.0 30.0 41.0 32 36.31937804733024 38.0 35.0 40.0 30.0 41.0 33 36.13704602211916 38.0 35.0 40.0 30.0 41.0 34 35.914144369128316 38.0 35.0 40.0 29.0 41.0 35 35.71339398263765 38.0 35.0 40.0 28.0 41.0 36 35.62349387560947 38.0 35.0 40.0 27.0 41.0 37 35.452352241645855 38.0 35.0 40.0 26.0 41.0 38 35.29619217505054 38.0 34.0 40.0 25.0 41.0 39 35.127905815198005 38.0 34.0 40.0 24.0 41.0 40 34.91367106671424 38.0 34.0 40.0 24.0 41.0 41 34.751335473897015 38.0 34.0 40.0 23.0 41.0 42 34.42278154358426 38.0 33.0 40.0 21.0 41.0 43 34.02302057319539 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 1.0 14 2.0 15 3.0 16 6.0 17 20.0 18 38.0 19 117.0 20 246.0 21 538.0 22 1010.0 23 1873.0 24 2881.0 25 4516.0 26 6724.0 27 9434.0 28 13118.0 29 17244.0 30 21822.0 31 26208.0 32 32600.0 33 40208.0 34 50414.0 35 62196.0 36 81960.0 37 122053.0 38 154926.0 39 190740.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.263408253062195 21.14389344749673 15.590557735759306 22.002140563681767 2 18.28647877274349 24.168747770246167 36.127839219883455 21.41693423712689 3 19.129028421928886 24.311333095492923 34.20275894874539 22.3568795338328 4 13.293257224402428 16.302176239743133 35.86776073254846 34.53680580330598 5 11.885717683434416 39.23891069092639 34.68605066000713 14.18932096563206 6 31.571768343441555 38.12248781067903 13.19062908788203 17.115114757997386 7 24.48602687596623 34.896777262456894 20.96848614579617 19.64870971578071 8 27.31799262694732 34.56213580687359 18.814841241526935 19.305030324652158 9 24.119039124747292 14.869544535616603 22.372339160423355 38.63907717921275 10 16.445712926626232 28.660244975621357 32.29944107503865 22.59460102271376 11 32.75740278273279 23.026400285408492 23.624568914258532 20.59162801760019 12 21.60756332500892 28.55012486621477 30.46283743608039 19.37947437269592 13 32.48531335473897 21.585325246759425 26.15388274467832 19.775478653823285 14 20.0172434296587 23.736234986324174 28.93245332381972 27.314068260197406 15 21.79605184920918 30.893923177547865 25.97371863479605 21.336306338446903 16 20.823165655844928 29.043405874658106 26.84576049470805 23.287667974788917 17 21.203234629563564 27.50909739564752 27.3707931977643 23.916874777024617 18 22.82792246402664 25.65560708764419 30.706742775597572 20.809727672731597 19 22.441075038649068 25.046022119158046 32.11452015697467 20.39838268521822 20 23.215364490426925 24.674515400166488 31.506600071352125 20.603520038054466 21 21.909977405161136 25.651088119871567 32.442502081103584 19.996432393863717 22 20.32714948269711 26.09561184445237 31.79521940777738 21.782019265073135 23 21.72125104055179 26.141633963610417 32.48424307289808 19.652871922939706 24 21.152336782019265 26.233321441312878 30.4815079081936 22.132833868474254 25 21.08169818052087 26.586276608395764 31.724105125460817 20.607920085622546 26 20.428945177785707 27.761327149482696 31.68391009632537 20.12581757640623 27 19.40789630158164 27.451777857057913 31.34011178499227 21.800214056368176 28 20.28053276251635 26.985610655250326 31.188845284813887 21.545011297419432 29 20.253062195266978 26.850992983707933 30.39457723867285 22.50136758235224 30 20.471280770602927 27.24628374360804 32.59281721964562 19.68961826614342 31 21.568081817100726 26.888215007729816 31.980259246045904 19.563443929123558 32 20.738018789392317 26.878701391366395 30.954691402069212 21.42858841717208 33 20.25234867403972 26.459507670353194 31.881912236889047 21.40623141871804 34 19.298014032584135 27.018075871090495 32.80104649779997 20.88286359852539 35 18.746699964323938 29.210964442858845 31.371506718991554 20.670828873825663 36 21.325722440242597 26.59460102271376 31.284813889879892 20.794862647163754 37 20.2739921512665 27.72826733261981 31.113568795338324 20.88417172077536 38 19.883696039957186 25.841955048162685 32.84136044713997 21.43298846474016 39 19.444166963967177 25.594838863122842 33.59020097514568 21.3707931977643 40 17.949696753478417 25.991675585682007 33.57723867285052 22.48138898798906 41 19.17588298251873 25.278630039243666 33.81983589011773 21.72565108811987 42 18.319538589606374 27.31965750981092 32.78725175407302 21.57355214650969 43 18.23510524438102 27.372814841241528 32.03769770484005 22.354382209537402 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 327.0 1 318.0 2 309.0 3 660.0 4 1011.0 5 1011.0 6 1557.0 7 2103.0 8 2283.0 9 2463.0 10 3692.5 11 4922.0 12 4922.0 13 8651.5 14 12381.0 15 21680.5 16 30980.0 17 28153.5 18 25327.0 19 25327.0 20 24904.0 21 24481.0 22 19290.0 23 14099.0 24 15325.5 25 16552.0 26 16552.0 27 17664.0 28 18776.0 29 19642.5 30 20509.0 31 22258.5 32 24008.0 33 24008.0 34 26459.0 35 28910.0 36 31274.0 37 33638.0 38 36086.5 39 38535.0 40 38535.0 41 39812.5 42 41090.0 43 43758.0 44 46426.0 45 51614.5 46 56803.0 47 56803.0 48 76783.5 49 96764.0 50 87757.0 51 78750.0 52 69857.0 53 60964.0 54 60964.0 55 53399.0 56 45834.0 57 38993.5 58 32153.0 59 28476.0 60 24799.0 61 24799.0 62 21604.5 63 18410.0 64 15893.5 65 13377.0 66 11276.5 67 9176.0 68 9176.0 69 7741.5 70 6307.0 71 5360.0 72 4413.0 73 3583.5 74 2754.0 75 2754.0 76 2170.5 77 1587.0 78 1236.5 79 886.0 80 706.0 81 526.0 82 526.0 83 397.0 84 268.0 85 209.5 86 151.0 87 108.0 88 65.0 89 65.0 90 57.0 91 49.0 92 30.0 93 11.0 94 7.5 95 4.0 96 4.0 97 2.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 840900.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.68596441364811 #Duplication Level Percentage of deduplicated Percentage of total 1 84.44889133924808 47.87066849228652 2 8.928760358612523 10.122707838926027 3 2.5830346035321137 4.392654228451291 4 1.165388094677433 2.6424459225189656 5 0.6623058179256281 1.8771722012942131 6 0.4338113346829243 1.475460832804406 7 0.30928427051327206 1.227245400641152 8 0.22530588048855302 1.0217344898847815 9 0.16804531430080824 0.8573229635702334 >10 0.9570482585527414 9.881839629959671 >50 0.06515825198625855 2.5779753966986294 >100 0.041616516454797046 4.576242962585604 >500 0.0073564549235950495 2.92465401231645 >1k 0.00336295082221488 3.8387349828013075 >5k 0.0 0.0 >10k+ 6.3055327916529E-4 4.7131406452606885 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 16471 1.958734689023665 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11719 1.3936258770365084 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11368 1.3518848852420027 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4526 0.5382328457604948 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3231 0.38423118087763114 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2661 0.31644666428826257 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2660 0.31632774408371983 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2556 0.30396004281127365 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2361 0.28077060292543704 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2120 0.25211083363063386 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1919 0.22820787251754074 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1614 0.19193721013200143 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1522 0.18099655131406828 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1274 0.1515043405874658 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1241 0.147579973837555 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1236 0.14698537281484123 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1220 0.14508264954215722 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 1054 0.12534189558806041 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 1024 0.12177428945177786 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 989 0.11761208229278154 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 977 0.11618503983826853 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 966 0.11487691758829824 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 933 0.11095255083838744 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 926 0.11012010940658819 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 896 0.10655250327030563 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 886 0.1053633012248781 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 878 0.1044119395885361 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 867 0.10310381733856583 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 854 0.10155785467951006 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 1.1892020454275182E-4 0.0 9 0.0 0.0 0.0 2.3784040908550363E-4 0.0 10 0.0 0.0 0.0 3.5676061362825543E-4 0.0 11 0.0 0.0 0.0 0.0011892020454275182 0.0 12 0.0 0.0 0.0 0.001902723272684029 0.0 13 0.0 0.0 0.0 0.0022594838863122845 0.0 14 1.1892020454275182E-4 0.0 0.0 0.0022594838863122845 0.0 15 1.1892020454275182E-4 0.0 0.0 0.0029730051135687953 0.0 16 1.1892020454275182E-4 0.0 0.0 0.00392436674991081 0.0 17 1.1892020454275182E-4 0.0 0.0 0.005351409204423832 0.0 18 1.1892020454275182E-4 0.0 0.0 0.006421691045308598 0.0 19 1.1892020454275182E-4 0.0 0.0 0.008205494113449875 0.0 20 1.1892020454275182E-4 0.0 0.0 0.015935307408728745 0.0 21 1.1892020454275182E-4 0.0 0.0 0.025686764181234393 0.0 22 1.1892020454275182E-4 0.0 0.0 0.041027470567249376 0.0 23 1.1892020454275182E-4 0.0 0.0 0.05066000713521227 0.0 24 1.1892020454275182E-4 0.0 0.0 0.06314662861220122 0.0 25 1.1892020454275182E-4 0.0 0.0 0.06814127720299679 0.0 26 1.1892020454275182E-4 0.0 0.0 0.07908193602092996 0.0 27 1.1892020454275182E-4 0.0 0.0 0.15186110120109406 0.0 28 1.1892020454275182E-4 0.0 0.0 0.33773338090141514 0.0 29 1.1892020454275182E-4 0.0 0.0 0.6026875966226662 0.0 30 1.1892020454275182E-4 0.0 0.0 1.003805446545368 0.0 31 1.1892020454275182E-4 0.0 0.0 1.5684385777143537 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAACCGT 25 0.005495516 29.599998 6 ATTGGAC 295 0.0 24.457626 3 GGTATCA 4290 0.0 22.76923 1 TATTGGA 330 0.0 22.424242 2 GTATTGG 345 0.0 21.985508 1 CGAACGT 65 6.899316E-5 19.923077 12 GGACCCT 420 0.0 19.821428 6 TTGGACC 470 0.0 18.5 4 CGCCGGA 90 2.1508185E-6 18.5 14 GTGTATG 75 2.0664357E-4 17.266666 1 ACTATAG 65 0.0015794575 17.076923 3 CCGCTAT 65 0.0015794575 17.076923 25 GACCCTC 490 0.0 16.989798 7 CTCTAAT 110 7.801482E-7 16.818182 1 CCGCCGG 100 5.874019E-6 16.65 13 TGGACCC 520 0.0 16.365385 5 GTACTGA 125 1.6560443E-7 16.279999 6 AGGAGTG 105 9.337058E-6 15.857142 5 TCTAATA 105 9.337058E-6 15.857142 2 GTCTTAT 70 0.0025917185 15.857142 1 >>END_MODULE