##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088529_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2256838 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.78313374730486 31.0 31.0 34.0 30.0 34.0 2 31.957825063207903 31.0 31.0 34.0 30.0 34.0 3 32.089357765156386 33.0 31.0 34.0 30.0 34.0 4 35.750774756539904 37.0 35.0 37.0 35.0 37.0 5 35.650164079123094 37.0 35.0 37.0 33.0 37.0 6 35.69116259120061 37.0 35.0 37.0 33.0 37.0 7 35.55731115835518 37.0 35.0 37.0 33.0 37.0 8 35.57750578464205 37.0 35.0 37.0 33.0 37.0 9 37.20912710615472 39.0 37.0 39.0 33.0 39.0 10 37.06168763553254 39.0 37.0 39.0 33.0 39.0 11 37.12000728452818 39.0 37.0 39.0 33.0 39.0 12 36.97570760506514 39.0 37.0 39.0 33.0 39.0 13 37.02522866063049 39.0 37.0 39.0 33.0 39.0 14 38.10103073415105 40.0 37.0 41.0 33.0 41.0 15 38.100104216607484 40.0 37.0 41.0 33.0 41.0 16 38.00143342145072 40.0 37.0 41.0 33.0 41.0 17 38.000767888523676 40.0 37.0 41.0 33.0 41.0 18 37.95471185791803 40.0 37.0 41.0 33.0 41.0 19 38.00323328479935 40.0 37.0 41.0 33.0 41.0 20 37.890886275399474 40.0 37.0 41.0 32.0 41.0 21 37.758061057107334 40.0 37.0 41.0 32.0 41.0 22 37.63294662709508 40.0 37.0 41.0 32.0 41.0 23 37.46397570406028 39.0 36.0 41.0 32.0 41.0 24 37.63469996517251 39.0 37.0 41.0 32.0 41.0 25 37.59992697747911 40.0 37.0 41.0 32.0 41.0 26 37.41305756106553 39.0 36.0 41.0 32.0 41.0 27 37.365945185254766 39.0 36.0 41.0 31.0 41.0 28 37.22729455991081 39.0 36.0 41.0 31.0 41.0 29 37.013605318591765 39.0 36.0 41.0 31.0 41.0 30 36.89601424648114 39.0 36.0 41.0 30.0 41.0 31 36.69501178197106 39.0 35.0 41.0 30.0 41.0 32 36.55485949811196 39.0 35.0 40.0 30.0 41.0 33 36.39656058609435 39.0 35.0 40.0 30.0 41.0 34 36.21076701118999 38.0 35.0 40.0 30.0 41.0 35 36.03008944372613 38.0 35.0 40.0 29.0 41.0 36 35.99138130428502 38.0 35.0 40.0 29.0 41.0 37 35.876789561324294 38.0 35.0 40.0 28.0 41.0 38 35.75898092818359 38.0 35.0 40.0 27.0 41.0 39 35.64053733586549 38.0 35.0 40.0 26.0 41.0 40 35.48775454862068 38.0 35.0 40.0 26.0 41.0 41 35.3942609084037 38.0 35.0 40.0 25.0 41.0 42 35.143663390992174 38.0 34.0 40.0 24.0 41.0 43 34.78856346800258 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 5.0 15 6.0 16 34.0 17 57.0 18 123.0 19 320.0 20 737.0 21 1379.0 22 2689.0 23 4668.0 24 7377.0 25 11382.0 26 16496.0 27 23079.0 28 31902.0 29 42165.0 30 53845.0 31 67480.0 32 83239.0 33 102942.0 34 129140.0 35 163609.0 36 215132.0 37 312807.0 38 438875.0 39 547347.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.61167084212513 20.621506727554216 13.85544731168121 23.91137511863944 2 18.403359035960936 23.01986230292117 35.65160636253023 22.925172298587672 3 18.97912034448197 24.17351178950372 32.726363168291215 24.121004697723098 4 13.56331291833973 16.255885446806552 36.386927196369435 33.79387443848428 5 12.713008199968273 38.22144079459846 35.24338034010416 13.822170665329104 6 32.419473617512644 37.78308412034892 14.223572981312794 15.573869280825651 7 26.441286437041562 33.18231082603182 21.46135433735164 18.915048399574978 8 27.029454484548737 34.70395305289968 19.298372324464584 18.968220138087005 9 25.127102609934788 14.583722890167572 21.28327332311845 39.0059011767792 10 16.09933898667073 28.03940734780255 33.40523333974348 22.45602032578324 11 33.85621830188963 22.679253007969557 23.104228128026914 20.360300562113895 12 21.32656398022366 27.076378543785594 30.861009961725212 20.736047514265536 13 31.3457589778265 21.05534380403024 25.731443727906033 21.867453490237228 14 20.811640002516796 22.375996859322644 27.837399051238947 28.974964086921613 15 22.952422814575083 29.786630675307663 24.66114094144108 22.599805568676175 16 22.23389538814926 28.26658360059517 25.932388589699396 23.567132421556177 17 21.934760049237028 27.18662128163386 27.003134473985284 23.875484195143827 18 22.92455196163836 25.93340771468754 29.06482432500693 22.077215998667164 19 23.03036372127729 25.334295151003307 30.140843073361935 21.494498054357468 20 23.672899871413012 25.273369200624945 29.493034059157104 21.56069686880494 21 22.82445616388948 25.656294337475703 29.926738206286853 21.592511292347965 22 22.015536781993212 26.15088012520172 29.469416945301347 22.36416614750372 23 22.57069404184084 26.198380211605794 29.843037027912505 21.38788871864086 24 22.268324088835794 26.15641884796339 28.718897856204123 22.856359206996693 25 22.46443918438098 26.099658017101802 29.556973074717813 21.878929723799402 26 21.966663092344245 26.930200572659622 29.473537755036027 21.629598579960106 27 21.232317073711098 26.93263761067476 29.359971783530764 22.475073532083385 28 21.81946599623012 26.568942919252514 29.23417631216773 22.37741477234963 29 21.816851719086618 26.660664168185754 28.77096185016381 22.751522262563817 30 21.90804125063474 26.94920946917767 29.782997273176008 21.35975200701158 31 22.461647668109098 26.708474423064484 29.61311356863009 21.216764340196328 32 21.906711957171936 26.68454714073407 29.000885309446222 22.407855592647767 33 21.69048022055637 26.422720638344444 29.646390214982198 22.240408926116984 34 21.242862801849313 26.68809192330154 30.124138285512743 21.944906989336406 35 20.912444756779173 28.050972200928907 29.378227413753226 21.65835562853869 36 22.38317504402177 26.572044603999046 29.14604415558405 21.898736196395134 37 21.59610038469753 26.89975975236149 29.364491381304287 22.139648481636698 38 21.301174475084167 25.996416224824287 30.38530014117097 22.31710915892058 39 20.99508250038328 25.683722092591495 31.014233188204027 22.306962218821198 40 20.197772281395473 25.927292964758657 30.9911034819513 22.88383127189457 41 20.864191404079513 25.137028001123696 31.30915909781739 22.689621496979402 42 20.049954848332046 26.48289332242722 30.775093294246197 22.692058534994537 43 19.950390767968283 26.221731466768993 30.534269628568822 23.293608136693905 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 756.0 1 677.0 2 598.0 3 1395.5 4 2193.0 5 2193.0 6 3070.0 7 3947.0 8 4158.5 9 4370.0 10 6510.0 11 8650.0 12 8650.0 13 15308.5 14 21967.0 15 36930.5 16 51894.0 17 48502.0 18 45110.0 19 45110.0 20 46327.5 21 47545.0 22 39728.5 23 31912.0 24 36088.0 25 40264.0 26 40264.0 27 45888.0 28 51512.0 29 56024.5 30 60537.0 31 66470.5 32 72404.0 33 72404.0 34 80105.5 35 87807.0 36 94937.5 37 102068.0 38 108528.5 39 114989.0 40 114989.0 41 119197.5 42 123406.0 43 129170.0 44 134934.0 45 140704.5 46 146475.0 47 146475.0 48 177229.5 49 207984.0 50 196934.0 51 185884.0 52 173029.0 53 160174.0 54 160174.0 55 147462.5 56 134751.0 57 119842.0 58 104933.0 59 95765.0 60 86597.0 61 86597.0 62 76528.5 63 66460.0 64 59004.5 65 51549.0 66 43792.0 67 36035.0 68 36035.0 69 30658.0 70 25281.0 71 21446.5 72 17612.0 73 14428.0 74 11244.0 75 11244.0 76 9063.5 77 6883.0 78 5324.0 79 3765.0 80 2949.0 81 2133.0 82 2133.0 83 1641.5 84 1150.0 85 847.5 86 545.0 87 399.0 88 253.0 89 253.0 90 208.5 91 164.0 92 114.0 93 64.0 94 45.5 95 27.0 96 27.0 97 18.0 98 9.0 99 6.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2256838.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.37107705825787 #Duplication Level Percentage of deduplicated Percentage of total 1 80.1367468597736 44.37257985570628 2 11.291548108219033 12.504503608144438 3 3.598143623568935 5.97699263541944 4 1.586462885880913 3.513766348167128 5 0.8363963434922217 2.315608319337646 6 0.5265529370074614 1.7493481950175285 7 0.34575958662762424 1.3401556500352696 8 0.25369885650051766 1.1238063146305655 9 0.19246635336252402 0.9591362354842385 >10 1.1043390791508452 11.37354113158755 >50 0.08007635170892204 3.0658289733610675 >100 0.041796398219464424 4.188128494456135 >500 0.002805887694376989 1.1333656531957041 >1k 0.0028860559142163 3.0642865582700933 >5k 8.016821983934167E-5 0.35818296473586336 >10k+ 2.40504659518025E-4 2.9607690624510288 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27086 1.2001747577805761 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 19972 0.8849549679684585 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19641 0.8702884300955585 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8069 0.3575356317112704 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4541 0.20121072048591876 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4334 0.1920385955925946 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3845 0.17037111214894465 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3751 0.16620599263216942 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3647 0.16159777529446065 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3292 0.14586780265132013 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3169 0.1404176994538376 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2506 0.11104031392594417 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2420 0.10722967266591577 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 4.430978209335362E-5 0.0 4 0.0 0.0 0.0 4.430978209335362E-5 0.0 5 0.0 0.0 0.0 4.430978209335362E-5 0.0 6 4.430978209335362E-5 0.0 0.0 4.430978209335362E-5 0.0 7 4.430978209335362E-5 0.0 0.0 4.430978209335362E-5 0.0 8 1.3292934628006086E-4 0.0 0.0 4.430978209335362E-5 0.0 9 1.3292934628006086E-4 0.0 0.0 8.861956418670724E-5 0.0 10 1.3292934628006086E-4 0.0 0.0 1.3292934628006086E-4 0.0 11 1.3292934628006086E-4 0.0 0.0 2.215489104667681E-4 0.0 12 1.3292934628006086E-4 0.0 0.0 3.5447825674682896E-4 0.0 13 1.3292934628006086E-4 0.0 0.0 4.8740760302688985E-4 0.0 14 1.3292934628006086E-4 0.0 0.0 5.76027167213597E-4 0.0 15 1.3292934628006086E-4 0.0 0.0 6.203369493069507E-4 0.0 16 1.3292934628006086E-4 0.0 0.0 7.532662955870115E-4 0.0 17 1.3292934628006086E-4 0.0 0.0 0.0011077445523338405 0.0 18 1.7723912837341448E-4 0.0 0.0 0.0011963641165205479 0.0 19 1.7723912837341448E-4 0.0 0.0 0.001506532591174023 0.0 20 1.7723912837341448E-4 0.0 0.0 0.0026585869256012173 0.0 21 1.7723912837341448E-4 0.0 0.0 0.005583032543762557 0.0 22 1.7723912837341448E-4 0.0 0.0 0.008773336854484016 0.0 23 1.7723912837341448E-4 0.0 0.0 0.010368489009844748 0.0 24 1.7723912837341448E-4 0.0 0.0 0.013425863974286148 0.0 25 1.7723912837341448E-4 0.0 0.0 0.015597043296860475 0.0 26 1.7723912837341448E-4 0.0 0.0 0.02007233128828919 0.0 27 1.7723912837341448E-4 0.0 0.0 0.05662790151530593 0.0 28 1.7723912837341448E-4 0.0 0.0 0.1560147427506981 0.0 29 1.7723912837341448E-4 0.0 0.0 0.30737695838159407 0.0 30 1.7723912837341448E-4 0.0 0.0 0.5035363637088706 0.0 31 1.7723912837341448E-4 0.0 0.0 0.8186675339568015 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6305 0.0 22.241077 1 TATAGCG 45 0.0038269327 20.555557 2 ATTGGAC 685 0.0 18.635036 3 GTATTGG 715 0.0 18.629372 1 GGACCCT 995 0.0 16.919598 6 TATACCG 125 1.6596823E-7 16.279999 5 ACTAGAC 105 9.350999E-6 15.857142 3 TATACTG 340 0.0 15.779412 5 TGGACCC 1055 0.0 15.606635 5 TATTGGA 830 0.0 15.3795185 2 GACCCTC 980 0.0 15.290815 7 TTGGACC 960 0.0 15.223958 4 CGAACTA 110 1.4530224E-5 15.136364 24 GACCGTG 210 9.094947E-12 14.97619 7 TATTACG 105 1.6567466E-4 14.095238 2 TCTATAC 250 0.0 14.059999 3 GTACCGA 80 0.0063011004 13.875001 6 ACGTTTA 135 6.5732092E-6 13.703704 26 GTATCAA 10350 0.0 13.602415 1 GTATTAG 410 0.0 13.536586 1 >>END_MODULE