##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088526_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2214222 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.77481255267087 31.0 31.0 34.0 30.0 34.0 2 31.935116713680923 31.0 31.0 34.0 30.0 34.0 3 32.05356915431244 33.0 31.0 34.0 30.0 34.0 4 35.70901427228164 37.0 35.0 37.0 35.0 37.0 5 35.62934610892675 37.0 35.0 37.0 33.0 37.0 6 35.688587232897156 37.0 35.0 37.0 33.0 37.0 7 35.537871089710066 37.0 35.0 37.0 33.0 37.0 8 35.58176551402705 37.0 35.0 37.0 33.0 37.0 9 37.19253805625633 39.0 37.0 39.0 33.0 39.0 10 37.057407974448815 39.0 37.0 39.0 33.0 39.0 11 37.122080351473336 39.0 37.0 39.0 33.0 39.0 12 36.97928437166644 39.0 37.0 39.0 33.0 39.0 13 37.02837971982936 39.0 37.0 39.0 33.0 39.0 14 38.05861381559753 40.0 37.0 41.0 33.0 41.0 15 38.06542297926766 40.0 37.0 41.0 33.0 41.0 16 37.9650391875792 40.0 37.0 41.0 33.0 41.0 17 38.012056153357705 40.0 37.0 41.0 33.0 41.0 18 37.989094137805516 40.0 37.0 41.0 33.0 41.0 19 38.05395077819659 40.0 37.0 41.0 33.0 41.0 20 37.95878868514539 40.0 37.0 41.0 33.0 41.0 21 37.826458232282036 40.0 37.0 41.0 32.0 41.0 22 37.714948184960676 40.0 37.0 41.0 32.0 41.0 23 37.55021086413196 39.0 36.0 41.0 32.0 41.0 24 37.70186774406541 40.0 37.0 41.0 32.0 41.0 25 37.658754180926756 40.0 37.0 41.0 32.0 41.0 26 37.45901043346151 39.0 36.0 41.0 32.0 41.0 27 37.4111782829364 39.0 36.0 41.0 32.0 41.0 28 37.2627753676009 39.0 36.0 41.0 31.0 41.0 29 37.04547692146497 39.0 36.0 41.0 31.0 41.0 30 36.894655097817655 39.0 35.0 41.0 31.0 41.0 31 36.6509667955607 39.0 35.0 40.0 30.0 41.0 32 36.50402263187702 39.0 35.0 40.0 30.0 41.0 33 36.33409341972033 38.0 35.0 40.0 30.0 41.0 34 36.1387114751818 38.0 35.0 40.0 30.0 41.0 35 35.947671462030456 38.0 35.0 40.0 29.0 41.0 36 35.866801522159925 38.0 35.0 40.0 28.0 41.0 37 35.71684907836703 38.0 35.0 40.0 27.0 41.0 38 35.57782507806353 38.0 35.0 40.0 27.0 41.0 39 35.422372734079964 38.0 35.0 40.0 26.0 41.0 40 35.234225836433744 38.0 34.0 40.0 25.0 41.0 41 35.08887320241602 38.0 34.0 40.0 24.0 41.0 42 34.79774205115837 38.0 34.0 40.0 23.0 41.0 43 34.403670002375556 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 6.0 15 12.0 16 24.0 17 56.0 18 137.0 19 303.0 20 648.0 21 1319.0 22 2538.0 23 4373.0 24 7108.0 25 11016.0 26 16687.0 27 23403.0 28 32249.0 29 42350.0 30 54270.0 31 67178.0 32 82836.0 33 103405.0 34 129088.0 35 161220.0 36 214382.0 37 316569.0 38 416067.0 39 526975.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.899141097866426 20.95015766260113 14.524966331289274 22.625734908243167 2 18.365141345357422 24.06904095433972 35.46302041981337 22.10279728048949 3 19.3360467017309 24.276608217242895 33.59514086663397 22.792204214392235 4 13.219225533844392 16.167168423039787 36.39747956618623 34.216126476929595 5 12.146162399253553 39.094002317744106 34.897178331712 13.862656951290338 6 31.895130659888665 37.96986029404459 13.522627812387375 16.61238123367937 7 25.496991719890776 34.13040788141387 21.106826686754985 19.265773711940355 8 27.687016026396634 34.29014796167683 18.853981217782138 19.168854794144398 9 24.670155025105885 14.421363350197044 21.916185459271926 38.992296165425145 10 16.28892676524757 28.437256968813422 32.79070481640956 22.48311144952945 11 33.06326104609204 22.94232466301934 23.392098895232728 20.6023153956559 12 21.435158714889475 27.996786230107006 30.62538444654601 19.942670608457508 13 32.11362726953305 21.19534536284076 25.940669002475815 20.75035836515038 14 20.291190314250333 23.308096478130917 28.582906321046398 27.81780688657235 15 22.3454558756981 30.41695909443588 25.521650493943245 21.715934535922777 16 21.299128994292353 28.7389430689425 26.618830451508472 23.343097485256674 17 21.359646864677526 27.38772354352906 27.299701655931518 23.952927935861894 18 22.86753541424482 25.733146902162474 29.94415194140425 21.455165742188452 19 22.557720047944603 25.18600212625473 31.430226960078983 20.826050865721683 20 23.407634826137578 25.065056710664063 30.7436201067463 20.783688356452064 21 22.134275605607748 25.727862879151232 31.56214688500069 20.575714630240327 22 20.811463349203468 26.280111027710863 31.038306005450224 21.87011961763545 23 21.81055016163691 26.277039971601763 31.616883943886386 20.29552592287494 24 21.537226167927155 26.37093299587846 29.848407250944124 22.243433585250262 25 21.500192844258613 26.542325024320057 30.957058506328632 21.000423625092697 26 20.921118117334213 27.63024665096815 30.837919594331552 20.61071563736608 27 20.02635688743044 27.50243652172185 30.59309319481064 21.878113396037076 28 20.628916161071473 27.112999509534276 30.541382029444204 21.71670229995005 29 20.71138305011873 27.120044873549265 29.793263728749874 22.37530834758213 30 20.888555890059806 27.47235823688862 31.41871049966986 20.22037537338171 31 21.646519635339185 27.27124922433252 31.110701636963235 19.971529503365065 32 21.047302393346285 27.143348769906538 30.231250525015106 21.578098311732067 33 20.648290912112696 26.888812413570097 31.01491178391327 21.447984890403944 34 19.754387771415875 27.557309068377062 31.595612364071897 21.092690796135166 35 19.492760888474596 29.41294955970991 30.485651393582035 20.608638158233454 36 21.599415054136397 27.272423451668352 30.219011463168556 20.909150031026698 37 20.666807573946965 27.970998391308548 30.296194329204567 21.065999705539916 38 20.317429778947186 26.514956494877207 31.664259500628212 21.503354225547394 39 19.793950200115436 26.35395186209874 32.358860132362516 21.493237805423306 40 18.84643906527891 26.57655826741853 32.25056024192696 22.326442425375596 41 19.846745267638024 25.810103955249293 32.42561044014557 21.917540336967114 42 19.078529614465037 27.406736993851567 31.642536294915324 21.872197096768076 43 18.9274607514513 27.298617753775368 31.2745515129016 22.499369981871737 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 717.0 1 698.0 2 679.0 3 1535.0 4 2391.0 5 2391.0 6 3728.5 7 5066.0 8 5419.5 9 5773.0 10 8717.0 11 11661.0 12 11661.0 13 20837.0 14 30013.0 15 50509.5 16 71006.0 17 64737.5 18 58469.0 19 58469.0 20 59251.5 21 60034.0 22 48022.0 23 36010.0 24 39991.5 25 43973.0 26 43973.0 27 48113.5 28 52254.0 29 55688.5 30 59123.0 31 63509.5 32 67896.0 33 67896.0 34 74841.0 35 81786.0 36 88397.0 37 95008.0 38 99583.5 39 104159.0 40 104159.0 41 108093.0 42 112027.0 43 117580.5 44 123134.0 45 132617.5 46 142101.0 47 142101.0 48 184959.0 49 227817.0 50 211255.5 51 194694.0 52 175463.0 53 156232.0 54 156232.0 55 140116.0 56 124000.0 57 107730.0 58 91460.0 59 82668.5 60 73877.0 61 73877.0 62 65237.0 63 56597.0 64 49278.0 65 41959.0 66 35552.0 67 29145.0 68 29145.0 69 24821.0 70 20497.0 71 17048.5 72 13600.0 73 11281.5 74 8963.0 75 8963.0 76 7194.5 77 5426.0 78 4295.0 79 3164.0 80 2447.0 81 1730.0 82 1730.0 83 1297.0 84 864.0 85 667.5 86 471.0 87 357.0 88 243.0 89 243.0 90 187.0 91 131.0 92 85.5 93 40.0 94 30.0 95 20.0 96 20.0 97 15.0 98 10.0 99 6.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2214222.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.595105688168466 #Duplication Level Percentage of deduplicated Percentage of total 1 80.40183682325586 41.48341268418762 2 11.169756312735823 11.526095149333832 3 3.476791647228246 5.38156297483448 4 1.5834085216144593 3.2678452008097847 5 0.8008251338626984 2.065932870969379 6 0.5156755434850571 1.5963800500149141 7 0.33347460306805016 1.2043960172731254 8 0.24623601935155784 1.016365875414202 9 0.18703746457035939 0.8685195976939281 >10 1.114296418527383 10.815383114085426 >50 0.10261425939738858 3.636741259400404 >100 0.05876649866441468 5.703578934341512 >500 0.004377714263501646 1.6306811618553043 >1k 0.004115051407691546 3.9349929261147927 >5k 4.377714263501644E-4 1.2963955893103083 >10k+ 3.5021714108013157E-4 4.5717165943609706 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 37225 1.6811774067821565 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 26689 1.2053443602312686 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26131 1.1801436351007262 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11158 0.50392417743117 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6789 0.30660882242160004 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5725 0.25855582683217854 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5604 0.253091153461577 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5319 0.24021981535726772 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5261 0.23760038514656617 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4730 0.2136190499416951 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4565 0.2061672226181476 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3727 0.1683209723324942 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3282 0.14822361985383578 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2800 0.12645525155110915 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2748 0.1241067968794457 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2662 0.12022281415323306 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 2424 0.10947411777138878 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2411 0.1088870041034729 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 1.8065035935872735E-4 0.0 0.0 0.0 0.0 7 1.8065035935872735E-4 0.0 0.0 0.0 0.0 8 1.8065035935872735E-4 0.0 0.0 4.5162589839681836E-5 0.0 9 1.8065035935872735E-4 0.0 0.0 4.5162589839681836E-5 0.0 10 1.8065035935872735E-4 0.0 0.0 4.5162589839681836E-5 0.0 11 1.8065035935872735E-4 0.0 0.0 3.1613812887777286E-4 0.0 12 1.8065035935872735E-4 0.0 0.0 6.322762577555457E-4 0.0 13 1.8065035935872735E-4 0.0 0.0 7.226014374349094E-4 0.0 14 1.8065035935872735E-4 0.0 0.0 0.0010387395663126822 0.0 15 1.8065035935872735E-4 0.0 0.0 0.0013097151053507734 0.0 16 1.8065035935872735E-4 0.0 0.0 0.001625853234228546 0.0 17 1.8065035935872735E-4 0.0 0.0 0.002258129491984092 0.0 18 1.8065035935872735E-4 0.0 0.0 0.002574267620861865 0.0 19 1.8065035935872735E-4 0.0 0.0 0.0031613812887777287 0.0 20 1.8065035935872735E-4 0.0 0.0 0.006413087757234821 0.0 21 2.258129491984092E-4 0.0 0.0 0.012690687744950597 0.0 22 2.7097553903809103E-4 0.0 0.0 0.020232840248177463 0.0 23 2.7097553903809103E-4 0.0 0.0 0.025471700669580558 0.0 24 2.7097553903809103E-4 0.0 0.0 0.031794463247136015 0.0 25 2.7097553903809103E-4 0.0 0.0 0.03576877115302802 0.0 26 2.7097553903809103E-4 0.0 0.0 0.04412385027336915 0.0 27 2.7097553903809103E-4 0.0 0.0 0.10026094944409368 0.0 28 2.7097553903809103E-4 4.5162589839681836E-5 0.0 0.24338119664604543 0.0 29 2.7097553903809103E-4 4.5162589839681836E-5 0.0 0.45266463796313106 0.0 30 2.7097553903809103E-4 4.5162589839681836E-5 0.0 0.7277499726766331 0.0 31 2.7097553903809103E-4 4.5162589839681836E-5 0.0 1.0810117504026244 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9660 0.0 21.02795 1 GTATTGG 840 0.0 20.041666 1 TTGGACC 1225 0.0 16.914288 4 CGACGAA 310 0.0 16.709679 10 TGGACCC 1285 0.0 16.41245 5 GTACCGT 80 3.384335E-4 16.1875 6 ATTGGAC 920 0.0 15.88587 3 ACGTTTA 140 3.477544E-8 15.857142 26 GGACCCT 1185 0.0 15.767934 6 TATTGGA 1050 0.0 15.15238 2 CCGTTAG 75 0.004106003 14.8 1 CGAACGT 215 1.2732926E-11 14.627907 12 GATACTG 965 0.0 14.378239 36 TTATACT 445 0.0 14.134832 4 GACCCTC 1390 0.0 14.107914 7 CGGGATT 105 1.6567249E-4 14.095238 17 TATACTT 425 0.0 13.929412 5 AAGACCG 120 3.3030745E-5 13.874999 5 ACCCTCG 1415 0.0 13.858657 8 TACCGTG 135 6.573073E-6 13.703704 7 >>END_MODULE