##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088523_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2689565 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.73232511577151 31.0 31.0 34.0 30.0 34.0 2 31.883283728037807 31.0 31.0 34.0 30.0 34.0 3 31.991270707344867 33.0 31.0 34.0 30.0 34.0 4 35.662120826230264 37.0 35.0 37.0 33.0 37.0 5 35.5889428216087 37.0 35.0 37.0 33.0 37.0 6 35.65059256794314 37.0 35.0 37.0 33.0 37.0 7 35.49030121971397 37.0 35.0 37.0 33.0 37.0 8 35.55108279591681 37.0 35.0 37.0 33.0 37.0 9 37.13282519663961 39.0 37.0 39.0 33.0 39.0 10 37.00973317246469 39.0 37.0 39.0 33.0 39.0 11 37.06752987936711 39.0 37.0 39.0 33.0 39.0 12 36.91408387601712 39.0 37.0 39.0 33.0 39.0 13 36.96925673854322 39.0 37.0 39.0 33.0 39.0 14 37.945885672961985 40.0 37.0 41.0 33.0 41.0 15 37.9576578368621 40.0 37.0 41.0 33.0 41.0 16 37.851722118632566 40.0 37.0 41.0 32.0 41.0 17 37.934903599652735 40.0 37.0 41.0 33.0 41.0 18 37.919917161325344 40.0 37.0 41.0 33.0 41.0 19 37.99963116712182 40.0 37.0 41.0 33.0 41.0 20 37.90675480979266 40.0 37.0 41.0 32.0 41.0 21 37.78214469626129 40.0 37.0 41.0 32.0 41.0 22 37.67728907834538 40.0 37.0 41.0 32.0 41.0 23 37.49259378375314 39.0 36.0 41.0 32.0 41.0 24 37.621005255496705 40.0 37.0 41.0 32.0 41.0 25 37.55889037818383 40.0 36.0 41.0 32.0 41.0 26 37.332374937954654 39.0 36.0 41.0 31.0 41.0 27 37.283972687033035 39.0 36.0 41.0 31.0 41.0 28 37.112527862312305 39.0 36.0 41.0 31.0 41.0 29 36.87964113155845 39.0 35.0 41.0 31.0 41.0 30 36.70232323814446 39.0 35.0 41.0 30.0 41.0 31 36.39637339123613 38.0 35.0 40.0 30.0 41.0 32 36.222998142822355 38.0 35.0 40.0 30.0 41.0 33 36.02950105314428 38.0 35.0 40.0 30.0 41.0 34 35.81803934837046 38.0 35.0 40.0 29.0 41.0 35 35.60333994530714 38.0 35.0 40.0 27.0 41.0 36 35.48792537083134 38.0 35.0 40.0 27.0 41.0 37 35.3037736585656 38.0 34.0 40.0 25.0 41.0 38 35.14185267877891 38.0 34.0 40.0 25.0 41.0 39 34.96928388047881 38.0 34.0 40.0 24.0 41.0 40 34.75076266979976 38.0 34.0 40.0 23.0 41.0 41 34.56237086666431 38.0 33.0 40.0 22.0 41.0 42 34.218174686241085 38.0 33.0 40.0 20.0 41.0 43 33.78293664588883 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 5.0 14 10.0 15 9.0 16 36.0 17 84.0 18 174.0 19 435.0 20 921.0 21 1826.0 22 3481.0 23 6023.0 24 9999.0 25 15471.0 26 22776.0 27 32181.0 28 44090.0 29 57614.0 30 71870.0 31 86800.0 32 105524.0 33 130762.0 34 161583.0 35 199168.0 36 264223.0 37 394445.0 38 489109.0 39 590945.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.568432069870035 21.190378369736372 15.520167759470397 21.7210218009232 2 18.42978325491297 24.319508916869456 35.70975232054254 21.540955507675033 3 19.427379520480077 24.294932451902074 34.24379035271503 22.033897674902818 4 13.21295451123137 16.282670245931964 35.90576914854261 34.59860609429406 5 11.968478173979808 39.408528888500555 34.414747366209774 14.208245571309858 6 31.551087257604856 38.18256855662533 13.06133147925408 17.20501270651574 7 24.42755612896509 35.052396948948996 20.80592958340847 19.714117338677443 8 27.807805351423 34.11800793065049 18.53816509361179 19.53602162431471 9 24.163907546387613 14.657872183791804 22.450768061006148 38.72745220881444 10 16.487647630750697 28.76915040164488 32.03696508543203 22.706236882172394 11 32.85668872103854 23.087934294207425 23.44542704861195 20.60994993614209 12 21.73355170817586 28.613400308228282 30.41986343516517 19.233184548430692 13 32.701719423029374 21.550845582835887 26.080983356044563 19.666451638090173 14 20.097710968130535 23.890629153785092 29.185463076742895 26.826196801341478 15 21.99158599996654 30.815838248936167 26.168804249014244 21.02377150208305 16 20.730824501359884 28.894672558573596 27.14011373586435 23.234389204202166 17 21.093299474078524 27.2815120660776 27.6313827700762 23.993805689767676 18 22.719473223365117 25.478097759303086 30.941695032468076 20.860733984863725 19 22.26817347786724 25.026389025734648 32.59958394759004 20.105853548808078 20 23.0951101758091 24.520359240248887 31.91296733858449 20.471563245357522 21 21.60319605586777 25.589230972294775 32.93350411683674 19.874068855000715 22 20.186833186779275 26.087452803706174 32.24737085736913 21.47834315214542 23 21.45413849451491 26.06752393044972 32.87553935301805 19.602798222017313 24 20.94647275674691 26.304476746239636 30.89410369334818 21.854946803665275 25 20.895535151595148 26.43297336186335 32.269679297581575 20.401812188959926 26 20.298561291509966 27.800889734957142 31.999784351744616 19.90076462178828 27 19.247461950166663 27.41097538077719 31.723903307783974 21.617659361272175 28 19.973713221282996 27.261880638690645 31.549265401654168 21.21514073837219 29 20.12485290372235 27.033219126513025 30.614021226480865 22.227906743283764 30 20.181665064796725 27.470836362013934 32.92342813800745 19.424070435181896 31 21.314710743187096 27.16201318800624 32.22680991163999 19.29646615716668 32 20.473013293971327 27.143943351434153 31.18876100782097 21.194282346773548 33 19.962373097508333 26.74603513951141 32.16245006162707 21.129141701353195 34 19.1214564437 27.32616612723619 32.95700234052718 20.59537508853662 35 18.555156688906944 29.433384208970597 31.686425128227054 20.325033973895408 36 21.191345068812243 27.063781689604085 31.3887189935919 20.356154247991775 37 20.10916263410626 28.08011704494965 31.22716870572007 20.583551615224025 38 19.59350303859546 26.184197072760835 32.978976154136454 21.243323734507253 39 19.14380206464614 25.996731813508877 33.749807124944 21.109658996900986 40 17.860509041424915 26.236584726526406 33.758990766164786 22.143915465883886 41 19.07312148990636 25.43902080819761 33.91299336509807 21.57486433679796 42 18.238785825960704 27.39037725431436 32.85966317973353 21.51117373999141 43 18.11185080115186 27.427186180664904 32.32660300085702 22.13436001732622 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1568.0 1 1262.5 2 957.0 3 2238.5 4 3520.0 5 3520.0 6 5084.0 7 6648.0 8 7203.5 9 7759.0 10 12104.0 11 16449.0 12 16449.0 13 29231.0 14 42013.0 15 73368.5 16 104724.0 17 95481.0 18 86238.0 19 86238.0 20 85932.0 21 85626.0 22 66356.0 23 47086.0 24 50797.0 25 54508.0 26 54508.0 27 57947.0 28 61386.0 29 63287.0 30 65188.0 31 69727.0 32 74266.0 33 74266.0 34 82487.0 35 90708.0 36 99643.5 37 108579.0 38 114244.5 39 119910.0 40 119910.0 41 124363.0 42 128816.0 43 137460.0 44 146104.0 45 161561.0 46 177018.0 47 177018.0 48 240902.5 49 304787.0 50 277516.5 51 250246.0 52 221303.5 53 192361.0 54 192361.0 55 169474.0 56 146587.0 57 123092.5 58 99598.0 59 88003.0 60 76408.0 61 76408.0 62 67117.5 63 57827.0 64 50616.5 65 43406.0 66 37211.0 67 31016.0 68 31016.0 69 26439.0 70 21862.0 71 18249.0 72 14636.0 73 11959.5 74 9283.0 75 9283.0 76 7444.5 77 5606.0 78 4402.0 79 3198.0 80 2495.5 81 1793.0 82 1793.0 83 1359.0 84 925.0 85 691.5 86 458.0 87 353.5 88 249.0 89 249.0 90 201.5 91 154.0 92 104.0 93 54.0 94 40.0 95 26.0 96 26.0 97 17.5 98 9.0 99 7.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2689565.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.27703462476157 #Duplication Level Percentage of deduplicated Percentage of total 1 77.07220630514944 33.35456540874719 2 12.30332220710296 10.649026023127854 3 4.254583198596552 5.523772331987754 4 1.9164299209291462 3.317496161759189 5 1.0680856384240915 2.311178957814499 6 0.6489417475427673 1.6850564686716973 7 0.43857166807768694 1.3286056885386248 8 0.31155208057079115 1.0786440142622908 9 0.2586920201799997 1.0075881163031428 >10 1.472282619907946 12.043166450295898 >50 0.1442989754910747 4.352183714399516 >100 0.09663391100323011 7.980546856293113 >500 0.007156740616907995 2.0895447894870354 >1k 0.006208256920691089 5.424360654943157 >5k 6.898063245212321E-4 2.186155823489092 >10k+ 3.4490316226061605E-4 5.668108539880099 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 56386 2.0964728496987433 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 39929 1.4845895154049076 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 39762 1.4783803328791085 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15818 0.5881248454675756 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9912 0.3685354323096858 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8119 0.30187037680814555 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8066 0.29989979792271243 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7980 0.2967022548255945 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7663 0.28491596224668303 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5956 0.22144844984226075 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5834 0.21691240033239576 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5055 0.18794860878989725 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4968 0.1847138849590919 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 4406 0.16381831262676305 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 4023 0.14957809162448202 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3886 0.14448433110930578 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3746 0.1392790283930673 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3629 0.1349288825516394 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3504 0.13028129084071216 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 3451 0.12831071195527902 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 3390 0.12604268720034653 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 3202 0.11905270926711198 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3020 0.11228581573600191 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3013 0.11202555060019 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 3010 0.11191400839912775 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2976 0.11064986345375553 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 2784 0.10351116258577131 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2715 0.10094569196133947 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 3.7180733687417854E-5 0.0 0.0 0.0 0.0 3 3.7180733687417854E-5 0.0 0.0 0.0 0.0 4 3.7180733687417854E-5 0.0 0.0 0.0 0.0 5 3.7180733687417854E-5 0.0 0.0 0.0 0.0 6 3.7180733687417854E-5 0.0 0.0 0.0 0.0 7 3.7180733687417854E-5 0.0 0.0 0.0 0.0 8 3.7180733687417854E-5 0.0 0.0 0.0 0.0 9 3.7180733687417854E-5 0.0 0.0 7.436146737483571E-5 0.0 10 7.436146737483571E-5 0.0 0.0 2.60265135811925E-4 0.0 11 1.1154220106225357E-4 0.0 0.0 6.320724726861035E-4 0.0 12 1.1154220106225357E-4 0.0 0.0 0.0010038798095602821 0.0 13 1.1154220106225357E-4 0.0 0.0 0.0011897834779973713 0.0 14 1.1154220106225357E-4 0.0 0.0 0.0013013256790596248 0.0 15 1.1154220106225357E-4 0.0 0.0 0.001747494483308639 0.0 16 1.1154220106225357E-4 0.0 0.0 0.002565470624431832 0.0 17 1.1154220106225357E-4 0.0 0.0 0.0036808926350543674 0.0 18 1.1154220106225357E-4 0.0 0.0 0.004015519238241129 0.0 19 1.4872293474967141E-4 0.0 0.0 0.004907856846739157 0.0 20 1.4872293474967141E-4 0.0 0.0 0.007919496275420003 0.0 21 1.8590366843708927E-4 0.0 0.0 0.014686389806530052 0.0 22 2.2308440212450714E-4 0.0 0.0 0.022234078745075877 0.0 23 2.2308440212450714E-4 0.0 0.0 0.02773682733081372 0.0 24 2.2308440212450714E-4 0.0 0.0 0.0349870703998602 0.0 25 2.2308440212450714E-4 0.0 0.0 0.039002589638101326 0.0 26 2.2308440212450714E-4 0.0 0.0 0.04729389325039551 0.0 27 2.2308440212450714E-4 0.0 0.0 0.10890236897044689 0.0 28 2.2308440212450714E-4 0.0 0.0 0.2724232357277106 0.0 29 2.2308440212450714E-4 0.0 0.0 0.5193404881458525 0.0 30 2.2308440212450714E-4 0.0 0.0 0.8625558408144068 0.0 31 2.2308440212450714E-4 0.0 0.0 1.3376884366059196 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12915 0.0 22.460703 1 GTATTGG 885 0.0 20.694914 1 ATTGGAC 855 0.0 20.339182 3 ACGTTTA 155 1.8189894E-12 19.096775 26 TTGGACC 1280 0.0 18.789062 4 GGACCCT 1350 0.0 17.814816 6 TATACCG 225 0.0 17.266666 5 TGGACCC 1495 0.0 17.076923 5 TATACTG 260 0.0 17.076923 5 TTGCGAT 355 0.0 16.676056 11 GACCCTC 1335 0.0 16.629213 7 TATTGGA 1070 0.0 15.906542 2 GTATTAG 375 0.0 15.786668 1 ATTAGAC 200 3.6379788E-12 15.724999 3 ATACACA 1200 0.0 15.416666 37 CGCCCTA 110 1.4532279E-5 15.136364 24 TATACAC 1795 0.0 14.738162 37 CTTGCGA 480 0.0 14.645833 10 CGGTATA 115 2.211912E-5 14.47826 26 ACCCTCG 1535 0.0 14.462541 8 >>END_MODULE