##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088519_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1790077 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32648539699689 31.0 31.0 33.0 30.0 34.0 2 31.493566477866594 31.0 31.0 34.0 30.0 34.0 3 31.582020214772886 31.0 31.0 34.0 30.0 34.0 4 35.3319320900721 37.0 35.0 37.0 33.0 37.0 5 35.22044303122156 37.0 35.0 37.0 33.0 37.0 6 35.312393824399734 37.0 35.0 37.0 33.0 37.0 7 35.15661225746155 37.0 35.0 37.0 32.0 37.0 8 35.222661930185126 37.0 35.0 37.0 32.0 37.0 9 36.75257377196623 39.0 37.0 39.0 32.0 39.0 10 36.54384196880916 38.0 35.0 39.0 32.0 39.0 11 36.64698222478698 38.0 35.0 39.0 32.0 39.0 12 36.45514522559644 38.0 35.0 39.0 32.0 39.0 13 36.53941701949134 38.0 35.0 39.0 32.0 39.0 14 37.42505210669709 39.0 36.0 41.0 32.0 41.0 15 37.44525738278298 39.0 36.0 41.0 32.0 41.0 16 37.307243207973734 39.0 36.0 40.0 32.0 41.0 17 37.36351341311016 39.0 36.0 40.0 32.0 41.0 18 37.3391647398408 39.0 36.0 40.0 32.0 41.0 19 37.41036223581444 39.0 36.0 40.0 32.0 41.0 20 37.30490978879679 39.0 36.0 40.0 31.0 41.0 21 37.16247345784567 39.0 36.0 40.0 31.0 41.0 22 37.02783176366156 39.0 36.0 40.0 31.0 41.0 23 36.842176621452595 39.0 36.0 40.0 30.0 41.0 24 36.99414047552144 39.0 36.0 40.0 31.0 41.0 25 36.923159171365256 39.0 36.0 40.0 31.0 41.0 26 36.67063651451865 39.0 35.0 40.0 30.0 41.0 27 36.61189323140848 39.0 35.0 40.0 30.0 41.0 28 36.44497862382456 39.0 35.0 40.0 30.0 41.0 29 36.213244458199284 38.0 35.0 40.0 30.0 41.0 30 36.052846888709254 38.0 35.0 40.0 29.0 41.0 31 35.763813511932725 38.0 35.0 40.0 28.0 41.0 32 35.59470067488717 38.0 34.0 40.0 27.0 41.0 33 35.39941522068604 38.0 34.0 40.0 27.0 41.0 34 35.18000398865524 38.0 34.0 40.0 26.0 41.0 35 34.951430580919144 38.0 33.0 40.0 25.0 41.0 36 34.87351382091385 38.0 33.0 40.0 25.0 41.0 37 34.69227301395415 38.0 33.0 40.0 24.0 41.0 38 34.53334688954721 38.0 33.0 40.0 24.0 41.0 39 34.36273299975364 38.0 33.0 40.0 23.0 41.0 40 34.15775019733788 37.0 33.0 40.0 22.0 41.0 41 33.989827811876246 37.0 33.0 40.0 21.0 41.0 42 33.670972254266154 37.0 33.0 40.0 19.0 41.0 43 33.2402840771654 37.0 32.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 5.0 15 23.0 16 28.0 17 90.0 18 205.0 19 451.0 20 1054.0 21 1909.0 22 3628.0 23 5815.0 24 9192.0 25 13911.0 26 19378.0 27 26869.0 28 35173.0 29 45314.0 30 55790.0 31 67670.0 32 81700.0 33 98930.0 34 121059.0 35 149512.0 36 197993.0 37 276013.0 38 345670.0 39 232692.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.254134319361675 22.51958993942719 15.39660025797773 21.8296754832334 2 19.83277814306312 25.077971506253643 33.84603008697391 21.243220263709325 3 20.611962502171693 24.809044527134866 33.20264994187401 21.37634302881943 4 14.693837192478313 17.415172643411427 35.28909650255269 32.601893661557575 5 12.216290137239906 40.01721713646955 34.24997919083928 13.516513535451269 6 32.10202689604972 38.43778787169491 13.1427865952135 16.31739863704187 7 25.207965914315416 34.52002344033245 21.018928236047945 19.25308240930418 8 27.901928241075662 34.758560665267474 18.4638984803447 18.875612613312164 9 24.817479918461608 14.530436400221891 21.7816887206528 38.8703949606637 10 16.547556334168863 29.000316746151146 32.41100801809084 22.041118901589147 11 33.68290861231109 23.110849421561195 22.855441413972695 20.350800552155018 12 21.269476117507793 28.56949728978139 30.559858598261414 19.6011679944494 13 32.38464043725494 21.102444196534563 25.97011190021435 20.54280346599616 14 20.24298396102514 23.342515433693634 28.802783343956712 27.611717261324515 15 22.568582245344754 30.78806107223321 25.285504478298975 21.357852204123063 16 21.176798539951076 28.70675395527678 26.936327319997964 23.180120184774175 17 21.599908830737448 27.661379929466722 27.483342895305622 23.25536834449021 18 22.455570346973904 25.810900871861936 30.23300115022985 21.500527630934315 19 22.446073548791475 25.264667385816363 31.946502859932842 20.342756205459317 20 23.0742588167995 25.127131402727372 31.192457084248332 20.6061526962248 21 22.04072785695811 25.84291066808858 31.91091779850811 20.205443676445203 22 20.83474621482763 26.467576534417237 31.28412911846809 21.413548132287048 23 21.87190830338583 26.387691702647427 31.72187565115914 20.018524342807602 24 21.427514011967084 26.456292103635764 30.191159374708466 21.92503450968869 25 21.498293090185506 26.677176456655218 31.14145369165684 20.683076761502438 26 20.9469760239364 27.69065241327608 31.085478445899255 20.276893116888267 27 20.101202350513415 27.42446274657459 30.935931806285428 21.53840309662657 28 20.68737825244389 27.3354721612534 30.849399215787926 21.12775037051479 29 20.813350487157813 27.10302405985888 30.119933388340275 21.963692064643027 30 20.79491552598017 27.47865035973313 31.735115305095814 19.99131880919089 31 21.63454421234394 27.27569819622284 31.243125295727502 19.846632295705717 32 20.925077524598105 27.30564104225684 30.42941728204988 21.339864151095174 33 20.71503069421036 27.184249616077967 30.85939878563883 21.24132090407284 34 20.064891063345318 27.454796637239625 31.739919567705748 20.740392731709306 35 19.62317822082514 29.228742674197818 30.713874319372852 20.434204785604194 36 21.725154839708015 27.260447455612248 30.428579329269077 20.585818375410668 37 20.634084455584873 27.976673629123216 30.544551994132096 20.844689921159816 38 20.51347511866808 26.47785542186174 31.763438109086927 21.24523135038325 39 19.926628854512963 26.38897656357799 32.4638549068001 21.22053967510895 40 18.910192131399935 26.768233992169048 32.21637951886986 22.105194357561157 41 19.91003738945308 25.85458614350109 32.56485614864612 21.67052031839971 42 19.10253022635339 27.550211527213637 31.61020447723757 21.737053769195402 43 18.998903399127524 27.385581737545365 31.212232769875264 22.403282093451846 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 765.0 1 635.5 2 506.0 3 953.0 4 1400.0 5 1400.0 6 2409.5 7 3419.0 8 3859.5 9 4300.0 10 6682.0 11 9064.0 12 9064.0 13 17089.0 14 25114.0 15 43892.5 16 62671.0 17 55891.0 18 49111.0 19 49111.0 20 50426.5 21 51742.0 22 40839.5 23 29937.0 24 32612.5 25 35288.0 26 35288.0 27 38545.5 28 41803.0 29 44588.0 30 47373.0 31 50961.0 32 54549.0 33 54549.0 34 60205.0 35 65861.0 36 71929.0 37 77997.0 38 82212.0 39 86427.0 40 86427.0 41 89909.5 42 93392.0 43 98429.0 44 103466.0 45 109894.5 46 116323.0 47 116323.0 48 148099.0 49 179875.0 50 166945.5 51 154016.0 52 138493.5 53 122971.0 54 122971.0 55 109884.5 56 96798.0 57 84747.5 58 72697.0 59 65497.5 60 58298.0 61 58298.0 62 51537.5 63 44777.0 64 39104.0 65 33431.0 66 28058.0 67 22685.0 68 22685.0 69 19392.5 70 16100.0 71 13566.5 72 11033.0 73 9129.0 74 7225.0 75 7225.0 76 5751.0 77 4277.0 78 3359.0 79 2441.0 80 1929.5 81 1418.0 82 1418.0 83 1092.0 84 766.0 85 584.5 86 403.0 87 306.0 88 209.0 89 209.0 90 149.5 91 90.0 92 62.5 93 35.0 94 24.0 95 13.0 96 13.0 97 9.5 98 6.0 99 5.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1790077.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.689316463884325 #Duplication Level Percentage of deduplicated Percentage of total 1 81.40208898127025 42.076183381741494 2 10.498178753305528 10.852873677480721 3 3.2429317985362776 5.028747840160057 4 1.4037810683744534 2.90241935556867 5 0.7724163166170772 1.996283571574399 6 0.5011653227808252 1.5542935781965683 7 0.3298390551631764 1.1934408713134619 8 0.25207317626595754 1.0423592144054061 9 0.19966229869977725 0.9288366969059448 >10 1.216151555200469 11.905360969475339 >50 0.11138874536313428 3.9370769767050238 >100 0.06123543705767007 5.810183313731007 >500 0.004435561261705555 1.5901910040819853 >1k 0.004111007998653929 4.012692128948733 >5k 2.1636884203441733E-4 0.8233629547456888 >10k+ 3.24553263051626E-4 4.345694464965479 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33350 1.8630483493168168 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23611 1.3189935405013304 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 20752 1.1592797404804374 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9679 0.540702997692278 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5045 0.2818314519431287 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4666 0.26065917834819397 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4336 0.2422242171705463 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3782 0.21127582779958626 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3722 0.2079240166763776 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3268 0.18256197917743203 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3101 0.1732327715511679 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3006 0.1679257372727542 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2545 0.1421726551427676 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2082 0.11630784597534073 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2032 0.11351467003933349 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2008 0.11217394559005003 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1876 0.10479996111899097 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1801 0.10061019721498013 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 1798 0.10044260665881971 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 5.586351872014444E-5 0.0 0.0 0.0 0.0 9 5.586351872014444E-5 0.0 0.0 0.0 0.0 10 5.586351872014444E-5 0.0 0.0 0.0 0.0 11 5.586351872014444E-5 0.0 0.0 1.1172703744028888E-4 0.0 12 5.586351872014444E-5 5.586351872014444E-5 0.0 2.793175936007222E-4 0.0 13 1.1172703744028888E-4 5.586351872014444E-5 0.0 2.793175936007222E-4 0.0 14 1.1172703744028888E-4 5.586351872014444E-5 0.0 2.793175936007222E-4 0.0 15 1.1172703744028888E-4 5.586351872014444E-5 0.0 5.027716684813E-4 0.0 16 1.675905561604333E-4 5.586351872014444E-5 0.0 0.0012289974118431777 0.0 17 1.675905561604333E-4 5.586351872014444E-5 0.0 0.0015641785241640443 0.0 18 1.675905561604333E-4 5.586351872014444E-5 0.0 0.0018434961177647665 0.0 19 1.675905561604333E-4 5.586351872014444E-5 0.0 0.0025138583424064997 0.0 20 1.675905561604333E-4 5.586351872014444E-5 0.0 0.0043573544601712665 0.0 21 1.675905561604333E-4 5.586351872014444E-5 0.0 0.007373984471059066 0.0 22 1.675905561604333E-4 5.586351872014444E-5 0.0 0.012904472824353365 0.0 23 1.675905561604333E-4 5.586351872014444E-5 0.0 0.01569764876036059 0.0 24 1.675905561604333E-4 5.586351872014444E-5 0.0 0.020334320814132577 0.0 25 1.675905561604333E-4 5.586351872014444E-5 0.0 0.0236302684186211 0.0 26 3.351811123208666E-4 5.586351872014444E-5 0.0 0.030501481221198865 0.0 27 3.351811123208666E-4 5.586351872014444E-5 0.0 0.07033217006866185 0.0 28 3.351811123208666E-4 5.586351872014444E-5 0.0 0.17826048823598092 0.0 29 3.351811123208666E-4 5.586351872014444E-5 0.0 0.34372823068504876 0.0 30 3.351811123208666E-4 5.586351872014444E-5 0.0 0.5661208987099438 0.0 31 3.351811123208666E-4 5.586351872014444E-5 0.0 0.8992909243568852 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTAGT 50 2.7029178E-4 22.2 1 GGTATCA 8015 0.0 21.419838 1 TCGAAAT 45 0.003826629 20.555555 23 TCGCGAC 45 0.003826629 20.555555 19 TCACGTT 110 1.7571438E-9 20.18182 24 GTATTGG 505 0.0 19.41584 1 ACGTTTA 120 5.178663E-9 18.5 26 TAAACGT 80 1.617491E-5 18.5 4 CGTTTAT 130 1.3946192E-8 17.076923 27 ATTGGAC 590 0.0 16.618645 3 AGTCGAC 80 3.3838832E-4 16.1875 35 TTGGACC 780 0.0 16.128206 4 ATTCGTC 105 9.348842E-6 15.857142 17 CCGTATA 95 7.063188E-5 15.578948 2 GACGTAT 120 1.936869E-6 15.416666 28 GGACCCT 740 0.0 15.25 6 CGAATTA 85 5.366224E-4 15.235294 15 CGTATAC 110 1.4526877E-5 15.136365 3 TATACAC 795 0.0 15.125786 37 TGGACCC 820 0.0 14.664634 5 >>END_MODULE