##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088517_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4093718 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.646031553712298 31.0 31.0 34.0 30.0 34.0 2 31.8027480153738 31.0 31.0 34.0 30.0 34.0 3 31.908746279054885 31.0 31.0 34.0 30.0 34.0 4 35.60270932194157 37.0 35.0 37.0 33.0 37.0 5 35.52441985500711 37.0 35.0 37.0 33.0 37.0 6 35.58445916401667 37.0 35.0 37.0 33.0 37.0 7 35.43082303177698 37.0 35.0 37.0 33.0 37.0 8 35.48219002872206 37.0 35.0 37.0 33.0 37.0 9 37.05774848194233 39.0 37.0 39.0 33.0 39.0 10 36.917284238924125 39.0 37.0 39.0 33.0 39.0 11 36.982137509227556 39.0 37.0 39.0 33.0 39.0 12 36.82354646802735 39.0 37.0 39.0 32.0 39.0 13 36.884963742006654 39.0 37.0 39.0 33.0 39.0 14 37.85948177182698 40.0 37.0 41.0 32.0 41.0 15 37.87089902137861 40.0 37.0 41.0 33.0 41.0 16 37.75419264346005 40.0 37.0 41.0 32.0 41.0 17 37.81682617122137 40.0 37.0 41.0 32.0 41.0 18 37.79065534069518 40.0 37.0 41.0 32.0 41.0 19 37.866745095778455 40.0 37.0 41.0 32.0 41.0 20 37.779274488374625 40.0 37.0 41.0 32.0 41.0 21 37.642616565185975 40.0 37.0 41.0 32.0 41.0 22 37.531370993312194 39.0 36.0 41.0 32.0 41.0 23 37.354645092798286 39.0 36.0 41.0 31.0 41.0 24 37.498033083861664 39.0 36.0 41.0 32.0 41.0 25 37.44504799793244 39.0 36.0 41.0 32.0 41.0 26 37.218954016861936 39.0 36.0 41.0 31.0 41.0 27 37.174652724002975 39.0 36.0 41.0 31.0 41.0 28 37.015063568130486 39.0 36.0 41.0 31.0 41.0 29 36.786120587690704 39.0 35.0 41.0 30.0 41.0 30 36.63205868113045 39.0 35.0 40.0 30.0 41.0 31 36.349232653543794 38.0 35.0 40.0 30.0 41.0 32 36.182130522913404 38.0 35.0 40.0 30.0 41.0 33 35.99349735375031 38.0 35.0 40.0 30.0 41.0 34 35.79391863337924 38.0 35.0 40.0 29.0 41.0 35 35.58321555124217 38.0 35.0 40.0 27.0 41.0 36 35.4937360121044 38.0 35.0 40.0 27.0 41.0 37 35.32390311203654 38.0 34.0 40.0 26.0 41.0 38 35.168935427403646 38.0 34.0 40.0 25.0 41.0 39 35.02446871035084 38.0 34.0 40.0 24.0 41.0 40 34.81107907286237 38.0 34.0 40.0 24.0 41.0 41 34.64578971976086 38.0 33.0 40.0 23.0 41.0 42 34.31740486276778 38.0 33.0 40.0 21.0 41.0 43 33.90038688546695 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 5.0 14 9.0 15 25.0 16 52.0 17 115.0 18 272.0 19 710.0 20 1512.0 21 2989.0 22 5510.0 23 9763.0 24 15651.0 25 24232.0 26 35309.0 27 49552.0 28 67230.0 29 87856.0 30 110284.0 31 135021.0 32 164410.0 33 202574.0 34 251313.0 35 309603.0 36 412288.0 37 600375.0 38 771508.0 39 835547.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.585668578050566 21.11911470208744 15.012196736560751 22.283019983301244 2 18.76672990176656 24.29119445941318 35.01247521201998 21.929600426800285 3 19.564684230814137 24.183102011423358 33.92424685823499 22.32796689952752 4 13.345545540752928 16.336029985455763 35.97101705588905 34.34740741790226 5 12.159704210206957 39.25700304710779 34.54788532087457 14.035407421810685 6 31.925648029492994 37.991747355338106 13.182417548057781 16.90018706711112 7 25.2807105912034 34.406693377511594 20.76266611427558 19.54992991700943 8 28.059700252924113 33.914964342927384 18.51466075582148 19.510674648327022 9 24.651258342660633 14.31371188733567 21.8414653867218 39.193564383281895 10 16.538462102177043 28.5994052350455 32.31001744624324 22.55211521653421 11 33.340401073058764 22.789943029783682 23.15420847259142 20.71544742456613 12 21.796640608854837 28.18349969392127 30.309024705658764 19.710834991565125 13 32.687424976512794 20.994167160512767 25.855860125196706 20.462547737777737 14 20.46946076891471 23.223754054382837 28.85042399110051 27.456361185601942 15 22.507168300307935 30.413355292181826 25.53475837856931 21.544718028940927 16 21.26555859490077 28.358646101172575 26.811983629551424 23.563811674375227 17 21.618318604261454 27.128737250587363 27.284365948020845 23.968578197130334 18 22.86537568049387 25.217907046845923 30.40097046254774 21.51574681011247 19 22.637441074348548 24.668113436245488 32.08572256320538 20.608722926200585 20 23.424109818995838 24.445943760659624 31.340971703473468 20.78897471687107 21 22.240222702198835 25.15940277273618 32.1699003204422 20.43047420462279 22 20.762959246337925 25.84911808776276 31.612143288814714 21.775779377084596 23 21.9789687516336 25.76792050649312 32.145545931595684 20.1075648102776 24 21.411587217292446 25.999519263417753 30.302600227959033 22.286293291330768 25 21.546867664064795 26.024142356654757 31.52708613539086 20.90190384388959 26 20.89701830951717 27.205659989281138 31.448038189245082 20.44928351195661 27 19.89665629142017 27.02880364499948 31.155956516789875 21.918583546790472 28 20.601516763001264 26.815843201705636 30.993878913984794 21.588761121308305 29 20.73381703380643 26.792978900842705 30.101487205518307 22.371716859832553 30 20.75953937227723 27.1242669866366 32.09192719185835 20.024266449227817 31 21.78662526339137 26.94447932173149 31.46376960992428 19.80512580495286 32 20.96893337547921 26.921810442243455 30.517930155423507 21.591326026853828 33 20.599928964330225 26.730737192938058 31.360660406994327 21.30867343573739 34 19.909871661897572 27.164621500552798 31.959529210365734 20.965977627183896 35 19.291704997755097 29.398434381655015 30.848021285296152 20.461839335293735 36 21.735058448090463 27.233189975469728 30.486516169408834 20.54523540703097 37 20.694439626764716 28.136696274633476 30.413575141228584 20.755288957373224 38 20.40077015563847 26.55810683588855 31.717866252633915 21.32325675583907 39 19.90777088211743 26.332737135288752 32.45572850890071 21.303763473693106 40 18.776623108870712 26.662559560770916 32.39570971913551 22.165107611222854 41 19.975044690425673 25.672408309512285 32.643137607426794 21.70940939263525 42 19.0709765548091 27.508245560637057 31.749182527961135 21.67159535659271 43 18.98848430693077 27.36693147891477 31.286913265642625 22.357670948511842 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1399.0 1 1258.0 2 1117.0 3 2567.0 4 4017.0 5 4017.0 6 6378.5 7 8740.0 8 9500.5 9 10261.0 10 15596.0 11 20931.0 12 20931.0 13 39148.0 14 57365.0 15 101007.0 16 144649.0 17 130168.5 18 115688.0 19 115688.0 20 117208.5 21 118729.0 22 91744.0 23 64759.0 24 70816.5 25 76874.0 26 76874.0 27 84234.5 28 91595.0 29 97615.0 30 103635.0 31 110778.0 32 117921.0 33 117921.0 34 130359.5 35 142798.0 36 156909.5 37 171021.0 38 179845.0 39 188669.0 40 188669.0 41 195263.5 42 201858.0 43 213320.0 44 224782.0 45 242775.0 46 260768.0 47 260768.0 48 344712.0 49 428656.0 50 399292.5 51 369929.0 52 333531.0 53 297133.0 54 297133.0 55 263933.0 56 230733.0 57 198939.5 58 167146.0 59 150312.5 60 133479.0 61 133479.0 62 118523.5 63 103568.0 64 90111.0 65 76654.0 66 65303.0 67 53952.0 68 53952.0 69 46095.5 70 38239.0 71 32504.5 72 26770.0 73 21906.5 74 17043.0 75 17043.0 76 13632.5 77 10222.0 78 8024.5 79 5827.0 80 4629.0 81 3431.0 82 3431.0 83 2538.0 84 1645.0 85 1280.0 86 915.0 87 669.5 88 424.0 89 424.0 90 322.0 91 220.0 92 150.5 93 81.0 94 64.5 95 48.0 96 48.0 97 33.5 98 19.0 99 13.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4093718.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.9019645884568 #Duplication Level Percentage of deduplicated Percentage of total 1 75.34938443637613 31.572872384150504 2 12.772548364250353 10.7038973852634 3 4.654337273100535 5.850776268005796 4 2.2240886623921265 3.727747374925726 5 1.2394944404474344 2.5968626075608734 6 0.7649725918705075 1.9232312673418812 7 0.49782017520789135 1.4601750347086295 8 0.36466794125602525 1.2224242528844331 9 0.26549813747227435 1.0012404199198026 >10 1.5935979820385522 12.689027204115611 >50 0.1610182348617914 4.691331685320225 >100 0.09890665900958734 7.817424342951121 >500 0.007358131702840922 2.0451660168765597 >1k 0.005372604085979374 4.846328195727239 >5k 4.6718296399820647E-4 1.4342271422698214 >10k+ 4.6718296399820647E-4 6.417268417978319 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 79861 1.9508183025797088 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 57045 1.3934765413738808 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 54462 1.3303798649540588 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22812 0.5572440505183797 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 13598 0.3321674819809278 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 12588 0.30749553340019997 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11111 0.2714158620598683 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10775 0.26320816431420047 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 9572 0.233821675064086 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9527 0.2327224298302912 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8680 0.21203219176308677 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 7066 0.17260592937764643 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7064 0.17255707403392223 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5956 0.1454912136107079 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5659 0.1382361950676622 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 5088 0.12428799443439925 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4901 0.11972001979618527 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4708 0.11500547912679866 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 4555 0.11126804533189633 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 4354 0.10635808328761287 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 4307 0.10520998271009387 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 4255 0.1039397437732643 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 2.442767186210677E-5 0.0 0.0 0.0 0.0 6 4.885534372421354E-5 0.0 0.0 0.0 0.0 7 4.885534372421354E-5 0.0 0.0 0.0 0.0 8 4.885534372421354E-5 0.0 0.0 0.0 0.0 9 4.885534372421354E-5 0.0 0.0 2.442767186210677E-5 0.0 10 7.32830155863203E-5 0.0 0.0 7.32830155863203E-5 0.0 11 7.32830155863203E-5 0.0 0.0 1.465660311726406E-4 0.0 12 7.32830155863203E-5 0.0 0.0 2.1984904675896092E-4 0.0 13 7.32830155863203E-5 0.0 0.0 3.17559734207388E-4 0.0 14 1.465660311726406E-4 0.0 0.0 3.908427497937083E-4 0.0 15 1.465660311726406E-4 0.0 0.0 5.37408780966349E-4 0.0 16 1.465660311726406E-4 0.0 0.0 7.084024840010963E-4 0.0 17 1.465660311726406E-4 0.0 0.0 0.001074817561932698 0.0 18 1.465660311726406E-4 0.0 0.0 0.0013190942805537656 0.0 19 1.465660311726406E-4 0.0 0.0 0.002222918139451716 0.0 20 1.465660311726406E-4 0.0 0.0 0.0037862891386265494 0.0 21 1.465660311726406E-4 0.0 0.0 0.00718173552745939 0.0 22 1.465660311726406E-4 0.0 0.0 0.011969559212432318 0.0 23 1.465660311726406E-4 0.0 0.0 0.015023018195195663 0.0 24 1.465660311726406E-4 0.0 0.0 0.019468854474099094 0.0 25 1.465660311726406E-4 0.0 0.0 0.02222918139451716 0.0 26 1.465660311726406E-4 0.0 0.0 0.028311671688181744 0.0 27 1.465660311726406E-4 0.0 0.0 0.07049826099404014 0.0 28 1.465660311726406E-4 0.0 0.0 0.17648992920372142 0.0 29 1.465660311726406E-4 0.0 0.0 0.35048823587750794 0.0 30 1.465660311726406E-4 0.0 0.0 0.5771037477422725 0.0 31 1.465660311726406E-4 0.0 0.0 0.8681106026355504 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18825 0.0 21.698805 1 GTATTGG 1390 0.0 21.028776 1 ATTGGAC 1395 0.0 20.02509 3 TTGGACC 1890 0.0 18.989418 4 GGACCCT 1820 0.0 18.398354 6 TGGACCC 2000 0.0 17.02 5 ACCGTTA 255 0.0 16.686274 8 TATTGGA 1715 0.0 16.180758 2 TATACCG 265 0.0 16.056604 5 GACCCTC 2075 0.0 15.959036 7 GTACCGA 85 5.3683197E-4 15.235294 6 ATCCGAT 85 5.3683197E-4 15.235294 7 TATACAC 1955 0.0 15.046036 37 TAATACT 760 0.0 14.848684 4 CTAATAC 790 0.0 14.753164 3 TGTTACG 215 1.2732926E-11 14.627907 16 GATACTG 2220 0.0 14.416667 36 ACTCTGT 2060 0.0 14.099515 37 GTATCGT 105 1.6572668E-4 14.095238 6 CCGTTTA 290 0.0 14.034484 27 >>END_MODULE