##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088516_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4309476 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.721908881729473 31.0 31.0 34.0 30.0 34.0 2 31.866500474767697 31.0 31.0 34.0 30.0 34.0 3 31.975375428474365 33.0 31.0 34.0 30.0 34.0 4 35.6380675980096 37.0 35.0 37.0 33.0 37.0 5 35.57336112325489 37.0 35.0 37.0 33.0 37.0 6 35.64032958995479 37.0 35.0 37.0 33.0 37.0 7 35.48580314636861 37.0 35.0 37.0 33.0 37.0 8 35.53982177879631 37.0 35.0 37.0 33.0 37.0 9 37.121989309141064 39.0 37.0 39.0 33.0 39.0 10 36.996223902859654 39.0 37.0 39.0 33.0 39.0 11 37.06273848607116 39.0 37.0 39.0 33.0 39.0 12 36.91695950969445 39.0 37.0 39.0 33.0 39.0 13 36.9765693091225 39.0 37.0 39.0 33.0 39.0 14 37.953808537279244 40.0 37.0 41.0 33.0 41.0 15 37.966017446204596 40.0 37.0 41.0 33.0 41.0 16 37.855670155721945 40.0 37.0 41.0 32.0 41.0 17 37.93631058625225 40.0 37.0 41.0 33.0 41.0 18 37.92952228994894 40.0 37.0 41.0 33.0 41.0 19 38.00590280581676 40.0 37.0 41.0 33.0 41.0 20 37.92219657331889 40.0 37.0 41.0 32.0 41.0 21 37.79247825025595 40.0 37.0 41.0 32.0 41.0 22 37.682842647226714 40.0 37.0 41.0 32.0 41.0 23 37.52080925848061 39.0 36.0 41.0 32.0 41.0 24 37.652245887899134 40.0 37.0 41.0 32.0 41.0 25 37.59024159781839 40.0 36.0 41.0 32.0 41.0 26 37.371216825433066 39.0 36.0 41.0 32.0 41.0 27 37.31943396366519 39.0 36.0 41.0 32.0 41.0 28 37.15735161304994 39.0 36.0 41.0 31.0 41.0 29 36.933037566516205 39.0 35.0 41.0 31.0 41.0 30 36.76919305270525 39.0 35.0 41.0 30.0 41.0 31 36.47420962548579 38.0 35.0 40.0 30.0 41.0 32 36.30296073118866 38.0 35.0 40.0 30.0 41.0 33 36.113152503923914 38.0 35.0 40.0 30.0 41.0 34 35.91268010310302 38.0 35.0 40.0 29.0 41.0 35 35.698646888856096 38.0 35.0 40.0 28.0 41.0 36 35.587503677941356 38.0 35.0 40.0 27.0 41.0 37 35.40845383522266 38.0 35.0 40.0 26.0 41.0 38 35.242649686411994 38.0 34.0 40.0 25.0 41.0 39 35.08479708437871 38.0 34.0 40.0 24.0 41.0 40 34.858800002598926 38.0 34.0 40.0 24.0 41.0 41 34.682970040905204 38.0 34.0 40.0 23.0 41.0 42 34.340863715217345 38.0 33.0 40.0 21.0 41.0 43 33.91539272988177 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 6.0 13 10.0 14 14.0 15 25.0 16 49.0 17 118.0 18 304.0 19 629.0 20 1419.0 21 2918.0 22 5502.0 23 9400.0 24 15423.0 25 24063.0 26 35636.0 27 50200.0 28 68669.0 29 90061.0 30 112772.0 31 137415.0 32 168682.0 33 206942.0 34 257092.0 35 318701.0 36 422195.0 37 631868.0 38 788681.0 39 960678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.85441571086601 21.18858534076997 15.158362640840789 21.798636307523232 2 18.417575593877306 24.63471196962229 35.47345431323901 21.47425812326139 3 19.523649743031406 24.40614589801637 34.2220956793819 21.848108679570323 4 12.910595162845784 16.246963667972626 36.398207113811516 34.444234055370075 5 11.809208358510407 39.70480401793628 34.593184879089705 13.892802744463594 6 31.435028295783525 38.25743547475378 13.158931619528685 17.148604609934015 7 24.777745600625227 34.816645921685144 20.969277935414883 19.436330542274746 8 27.947550931946253 34.01717517396546 18.58318737591299 19.452086518175296 9 24.39073799227563 14.48408112726466 22.37545817635369 38.74972270410602 10 16.409117953087566 28.741823831946157 32.363447435372656 22.48561077959362 11 32.572173507869636 23.19277332093275 23.516757025680153 20.71829614551746 12 21.614553602340518 28.655711274410162 30.590888544222082 19.13884657902724 13 32.46582647171025 21.239658835552163 26.27618763858994 20.01832705414765 14 20.046938421283702 23.73402241943104 29.48513926055047 26.733899898734787 15 22.049873348871184 30.750281472735896 26.257786329474857 20.94205884891806 16 20.58001947336521 28.781480625486715 27.331629181830923 23.306870719317153 17 21.00575568816255 27.386415424984385 27.822988224090356 23.78484066276271 18 22.434096395942337 25.48674131147267 31.05832356416418 21.02083872842081 19 22.125102912743916 24.843600474860516 32.944910239667195 20.08638637272838 20 22.91276247970751 24.63682359525845 32.14859532806308 20.301818596970953 21 21.49516553752707 25.584665049764748 33.10369984657067 19.816469566137506 22 20.043248877589757 26.257066984477927 32.49856827140933 21.201115866522983 23 21.3408312286691 26.15758853280538 33.04517765036863 19.45640258815689 24 20.83761459629895 26.378241809445047 31.061038511410665 21.72310508284534 25 20.818911626378707 26.566803017350598 32.36541983294489 20.248865523325808 26 20.207978881887264 27.82094621248616 32.157830789636606 19.813244115989974 27 19.141909596433536 27.573537942896074 31.939103501214532 21.345448959455858 28 19.87656968039734 27.307078633225938 31.790616771041307 21.025734915335413 29 20.030184644258373 27.180218662315326 30.997875379744542 21.791721313681755 30 20.060814818321298 27.60908750855092 32.96229054298016 19.36780713014761 31 21.116465203658173 27.44702604214526 32.41199162032692 19.02451713386964 32 20.315161286430182 27.303017814694876 31.38919905807574 20.992621840799206 33 19.89527265031758 27.11269305131297 32.19089745481817 20.801136843551284 34 19.05366220858406 27.666310242823027 32.96393807506991 20.316089473523 35 18.5804724286665 29.9507875203389 31.566181131998416 19.902558918996185 36 21.1205956362212 27.610688631286028 31.260737964430014 20.007977768062755 37 20.05308766077361 28.50246758538625 31.21210096076646 20.23234379307368 38 19.70536557112744 26.837415964261087 32.622481248300254 20.83473721631122 39 19.08691451118419 26.703246519994543 33.39958268708307 20.810256281738198 40 17.978079005428967 27.049413896260244 33.21308669545903 21.759420402851763 41 19.32241878130891 26.06439854868666 33.423042615853994 21.190140054150437 42 18.3381691880869 27.968388732179967 32.48497033049958 21.20847174923355 43 18.342392439359216 27.802452084661798 31.96288829546794 21.89226718051104 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1530.0 1 1357.0 2 1184.0 3 3270.0 4 5356.0 5 5356.0 6 8217.5 7 11079.0 8 12009.5 9 12940.0 10 19502.5 11 26065.0 12 26065.0 13 48291.5 14 70518.0 15 120625.0 16 170732.0 17 152780.5 18 134829.0 19 134829.0 20 134435.0 21 134041.0 22 102899.5 23 71758.0 24 78827.5 25 85897.0 26 85897.0 27 93624.5 28 101352.0 29 106236.0 30 111120.0 31 118961.0 32 126802.0 33 126802.0 34 140709.5 35 154617.0 36 169083.5 37 183550.0 38 192312.0 39 201074.0 40 201074.0 41 207464.5 42 213855.0 43 228082.0 44 242309.0 45 260533.5 46 278758.0 47 278758.0 48 373396.5 49 468035.0 50 431153.0 51 394271.0 52 348849.5 53 303428.0 54 303428.0 55 267090.0 56 230752.0 57 195200.5 58 159649.0 59 141933.5 60 124218.0 61 124218.0 62 107980.0 63 91742.0 64 78814.5 65 65887.0 66 55975.0 67 46063.0 68 46063.0 69 39373.5 70 32684.0 71 27167.0 72 21650.0 73 17841.5 74 14033.0 75 14033.0 76 11001.5 77 7970.0 78 6229.0 79 4488.0 80 3468.0 81 2448.0 82 2448.0 83 1887.0 84 1326.0 85 1017.5 86 709.0 87 534.0 88 359.0 89 359.0 90 299.5 91 240.0 92 165.5 93 91.0 94 68.0 95 45.0 96 45.0 97 30.5 98 16.0 99 11.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4309476.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.43350019591054 #Duplication Level Percentage of deduplicated Percentage of total 1 75.70627362177841 30.610696293178343 2 12.807828806484958 10.357306971123965 3 4.615453482805042 5.598568179036409 4 2.097276156492212 3.3920086353762544 5 1.1723364449367988 2.370083293801256 6 0.7117446345011668 1.7266996091124718 7 0.4687448444808893 1.3267096332805066 8 0.34710828279565287 1.1227842256336162 9 0.24408235008475587 0.8882193374973254 >10 1.5315120007014702 11.92870029752445 >50 0.1631227436081403 4.612187896006446 >100 0.11633784031473036 8.885752391723889 >500 0.01098781357198744 2.9524334126327845 >1k 0.006097948872313441 5.333495616228288 >5k 5.177503759511411E-4 1.4249156452176188 >10k+ 5.75278195501268E-4 7.46943856262634 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 91813 2.1304910388177127 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 63955 1.4840551380260616 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 63025 1.4624747881180913 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27704 0.6428623804843094 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 15018 0.34848784399773897 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13369 0.31022333109640243 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 12160 0.28216887621604114 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 12004 0.278548946554059 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11390 0.26430127467933456 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 10683 0.24789556781381308 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9453 0.21935381470972343 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 8341 0.19355021352944068 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8265 0.19178665805309045 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 6464 0.14999503419905344 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6399 0.14848673017322755 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5824 0.13514404071399863 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5743 0.1332644618510464 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 5682 0.13184897653450212 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 5088 0.11806539820618561 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 4972 0.11537365563701946 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 4900 0.11370291886995078 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4702 0.10910839276051196 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4692 0.10887634598730797 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 4544 0.10544205374388904 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 4477 0.10388734036342237 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4466 0.10363208891289799 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4351 0.10096355102105221 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4338 0.10066189021588703 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.320467732039812E-5 2 0.0 0.0 0.0 0.0 2.320467732039812E-5 3 0.0 0.0 0.0 0.0 2.320467732039812E-5 4 0.0 0.0 0.0 0.0 2.320467732039812E-5 5 0.0 0.0 0.0 0.0 4.640935464079624E-5 6 0.0 0.0 0.0 2.320467732039812E-5 4.640935464079624E-5 7 0.0 0.0 0.0 2.320467732039812E-5 4.640935464079624E-5 8 2.320467732039812E-5 0.0 0.0 6.961403196119435E-5 4.640935464079624E-5 9 4.640935464079624E-5 0.0 0.0 1.392280639223887E-4 4.640935464079624E-5 10 6.961403196119435E-5 0.0 0.0 2.3204677320398117E-4 4.640935464079624E-5 11 1.1602338660199058E-4 0.0 0.0 4.4088886908756424E-4 4.640935464079624E-5 12 1.1602338660199058E-4 0.0 0.0 6.497309649711473E-4 4.640935464079624E-5 13 1.1602338660199058E-4 0.0 0.0 6.961403196119435E-4 4.640935464079624E-5 14 1.6243274124278683E-4 0.0 0.0 7.657543515731379E-4 4.640935464079624E-5 15 1.6243274124278683E-4 0.0 0.0 0.0010906198340587116 4.640935464079624E-5 16 1.6243274124278683E-4 0.0 0.0 0.0017403507990298589 4.640935464079624E-5 17 1.6243274124278683E-4 0.0 0.0 0.0023204677320398117 4.640935464079624E-5 18 1.8563741856318495E-4 0.0 0.0 0.002877379987729367 4.640935464079624E-5 19 2.0884209588358307E-4 0.0 0.0 0.003898385789826884 4.640935464079624E-5 20 2.0884209588358307E-4 0.0 0.0 0.006682947068274658 4.640935464079624E-5 21 2.0884209588358307E-4 0.0 0.0 0.012182455593209011 4.640935464079624E-5 22 2.0884209588358307E-4 0.0 0.0 0.02046652539659114 4.640935464079624E-5 23 2.0884209588358307E-4 0.0 0.0 0.02503784682870957 4.640935464079624E-5 24 2.0884209588358307E-4 0.0 0.0 0.031929635992867814 4.640935464079624E-5 25 2.0884209588358307E-4 0.0 0.0 0.03599045452393748 4.640935464079624E-5 26 2.0884209588358307E-4 0.0 0.0 0.04369440739430966 4.640935464079624E-5 27 2.0884209588358307E-4 0.0 0.0 0.09432701330741836 4.640935464079624E-5 28 2.0884209588358307E-4 0.0 0.0 0.22585112435943488 4.640935464079624E-5 29 2.0884209588358307E-4 0.0 0.0 0.4290312789768408 4.640935464079624E-5 30 2.0884209588358307E-4 0.0 0.0 0.7037282490957137 4.640935464079624E-5 31 2.0884209588358307E-4 0.0 0.0 1.0433983157117013 4.640935464079624E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22750 0.0 20.776922 1 GTATTGG 1465 0.0 20.204779 1 ATTGGAC 1575 0.0 18.911112 3 TTGGACC 2140 0.0 17.20327 4 TATACCG 315 0.0 17.031746 5 GGACCCT 2060 0.0 16.883493 6 CTAATAC 810 0.0 16.67284 3 TGGACCC 2260 0.0 16.617256 5 GACCCTC 2160 0.0 16.016205 7 CAATGCG 235 0.0 15.744679 19 TATTGGA 1935 0.0 15.679586 2 TCGCTAA 95 7.066881E-5 15.578948 14 AATACTG 975 0.0 15.558974 5 TATACTG 335 0.0 15.462686 5 GATCGGT 120 1.9384097E-6 15.416666 11 CGCTTAT 180 2.0190782E-10 15.416666 1 ACGTTTA 210 9.094947E-12 14.97619 26 GACGTAT 240 0.0 14.645833 28 TTGCGAT 460 0.0 14.478261 11 ATACTGG 720 0.0 14.131945 6 >>END_MODULE