##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088513_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3421621 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.749978738147796 31.0 31.0 34.0 30.0 34.0 2 31.9103436645964 31.0 31.0 34.0 30.0 34.0 3 32.0422352446399 33.0 31.0 34.0 30.0 34.0 4 35.70877458374262 37.0 35.0 37.0 35.0 37.0 5 35.61637510408079 37.0 35.0 37.0 33.0 37.0 6 35.65655693602535 37.0 35.0 37.0 33.0 37.0 7 35.51634561513388 37.0 35.0 37.0 33.0 37.0 8 35.54729790353753 37.0 35.0 37.0 33.0 37.0 9 37.157131955877055 39.0 37.0 39.0 33.0 39.0 10 37.01790847086805 39.0 37.0 39.0 33.0 39.0 11 37.07995128624707 39.0 37.0 39.0 33.0 39.0 12 36.936506702524916 39.0 37.0 39.0 33.0 39.0 13 36.983691063387795 39.0 37.0 39.0 33.0 39.0 14 38.039112455762925 40.0 37.0 41.0 33.0 41.0 15 38.04234221148397 40.0 37.0 41.0 33.0 41.0 16 37.94207511585883 40.0 37.0 41.0 33.0 41.0 17 37.965857703117905 40.0 37.0 41.0 33.0 41.0 18 37.932051211984025 40.0 37.0 41.0 33.0 41.0 19 37.99633419364681 40.0 37.0 41.0 33.0 41.0 20 37.89401426984462 40.0 37.0 41.0 32.0 41.0 21 37.75504534254378 40.0 37.0 41.0 32.0 41.0 22 37.64484231304402 40.0 37.0 41.0 32.0 41.0 23 37.47439590767066 39.0 36.0 41.0 32.0 41.0 24 37.62384407858147 39.0 37.0 41.0 32.0 41.0 25 37.58089046098326 40.0 37.0 41.0 32.0 41.0 26 37.380807225581094 39.0 36.0 41.0 32.0 41.0 27 37.34221879045049 39.0 36.0 41.0 31.0 41.0 28 37.19572419037643 39.0 36.0 41.0 31.0 41.0 29 36.988841546156046 39.0 36.0 41.0 31.0 41.0 30 36.87309699116296 39.0 35.0 41.0 30.0 41.0 31 36.64438112812611 39.0 35.0 40.0 30.0 41.0 32 36.48049272552395 39.0 35.0 40.0 30.0 41.0 33 36.31804779079857 38.0 35.0 40.0 30.0 41.0 34 36.13245914728721 38.0 35.0 40.0 30.0 41.0 35 35.95421702169819 38.0 35.0 40.0 29.0 41.0 36 35.9010927861385 38.0 35.0 40.0 28.0 41.0 37 35.77506041727006 38.0 35.0 40.0 27.0 41.0 38 35.64399856091601 38.0 35.0 40.0 27.0 41.0 39 35.529039306223574 38.0 35.0 40.0 26.0 41.0 40 35.364725958836466 38.0 35.0 40.0 25.0 41.0 41 35.24639081885457 38.0 34.0 40.0 25.0 41.0 42 34.986782872796255 38.0 34.0 40.0 24.0 41.0 43 34.61164781254265 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 3.0 13 4.0 14 6.0 15 18.0 16 38.0 17 99.0 18 191.0 19 476.0 20 1022.0 21 2152.0 22 4100.0 23 7041.0 24 11375.0 25 17616.0 26 26252.0 27 37446.0 28 50748.0 29 66775.0 30 84968.0 31 104813.0 32 128624.0 33 159459.0 34 198331.0 35 247603.0 36 325729.0 37 473306.0 38 645433.0 39 827991.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.046334471292994 21.41154733385141 14.513238023732026 23.02888017112357 2 18.131260008048816 23.76096008295483 35.863732423900835 22.244047485095514 3 18.841215903222476 24.66459610810198 33.28331805305147 23.21086993562408 4 13.304688041136059 16.61025578227396 36.826697053823324 33.25835912276667 5 12.30481108223266 38.88639332059278 35.01767144870808 13.791124148466471 6 31.41031692288538 38.55085060560477 14.236176362022562 15.802656109487287 7 25.335447730768546 33.97912860600283 21.792419440960877 18.893004222267752 8 26.80846300627685 34.85441549487801 19.488277632151544 18.848843866693592 9 24.65235045026904 14.735267289977468 22.080703853524398 38.53167840622909 10 16.02950765149033 28.377456182318262 33.32236387373119 22.270672292460212 11 33.198095288753485 23.142715104916647 23.59092371715044 20.068265889179425 12 20.95004093089211 27.77338577241606 31.167508032011725 20.109065264680105 13 31.22557992249872 21.59342019469719 26.225990546585958 20.955009336218126 14 20.286992627178755 22.985918078010393 28.617108674514213 28.10998062029664 15 22.46441087426106 30.41353791083232 25.371483282338986 21.750567932567634 16 21.37863895504499 28.842615824487865 26.642226009251168 23.13651921121597 17 21.337927257285365 27.642541356859805 27.595575313572134 23.4239560722827 18 22.47656885435295 26.242941576521773 29.928796906495485 21.35169266262979 19 22.481128096887414 25.718979396023112 31.145822404059366 20.654070103030115 20 23.12605633411766 25.44001804992429 30.49338310701273 20.940542508945324 21 22.009158816829803 26.142755144418388 31.060073573315105 20.788012465436704 22 21.147052815025393 26.490718872721438 30.707872087528106 21.654356224725063 23 21.848591647058512 26.476193593621268 31.052620965326085 20.622593793994135 24 21.56626932088621 26.528244945889686 29.731463537311704 22.174022195912404 25 21.581788281051583 26.637491411234613 30.673590090778614 21.10713021693519 26 21.141295310029953 27.406512877960477 30.50256004390901 20.949631768100556 27 20.35441681004413 27.423493133809966 30.320570279408503 21.9015197767374 28 20.884107269624543 27.240685043726348 30.212142139646676 21.66306554700243 29 20.908978522168294 27.156076023615704 29.755107301480788 22.179838152735208 30 21.080505409570492 27.34771033963142 31.063376101561218 20.508408149236868 31 21.736305686690606 27.136816146498983 30.59503083480023 20.531847332010177 32 21.082814256751405 27.16908155520439 30.030707667506135 21.717396520538074 33 20.96731344587843 26.761789222126005 30.69328835660057 21.577608975394995 34 20.259111105525715 27.065358787545435 31.310159716695686 21.365370390233167 35 20.004319590042265 28.45005335190543 30.508200645249723 21.03742641280259 36 21.585120035211382 26.8484732821081 30.296458900620493 21.269947782060022 37 20.791168864114407 27.26201996071453 30.36619193066678 21.580619244504287 38 20.448787285324705 26.09292496158984 31.54364554110464 21.914642211980812 39 20.06350206524919 25.903599492755042 32.249831293413266 21.7830671485825 40 19.223052465483466 26.03885702127734 32.253952147242494 22.4841383659967 41 19.959136327489222 25.329076481585776 32.47259120750077 22.23919598342423 42 19.145399212829243 26.745130451327014 31.850809893907012 22.25866044193673 43 19.058802830588192 26.638338962731407 31.473854059230987 22.82900414744941 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1624.0 1 1490.5 2 1357.0 3 2748.5 4 4140.0 5 4140.0 6 5820.0 7 7500.0 8 7997.5 9 8495.0 10 12325.0 11 16155.0 12 16155.0 13 27941.5 14 39728.0 15 66303.5 16 92879.0 17 86560.5 18 80242.0 19 80242.0 20 81345.0 21 82448.0 22 67834.0 23 53220.0 24 59884.0 25 66548.0 26 66548.0 27 74073.0 28 81598.0 29 88665.0 30 95732.0 31 104770.5 32 113809.0 33 113809.0 34 126132.0 35 138455.0 36 150026.5 37 161598.0 38 171358.0 39 181118.0 40 181118.0 41 187594.5 42 194071.0 43 202919.5 44 211768.0 45 222209.0 46 232650.0 47 232650.0 48 283052.5 49 333455.0 50 308639.0 51 283823.0 52 256549.5 53 229276.0 54 229276.0 55 207422.0 56 185568.0 57 163092.5 58 140617.0 59 125831.0 60 111045.0 61 111045.0 62 97141.5 63 83238.0 64 72532.5 65 61827.0 66 52678.0 67 43529.0 68 43529.0 69 37337.0 70 31145.0 71 26375.0 72 21605.0 73 17558.5 74 13512.0 75 13512.0 76 10884.5 77 8257.0 78 6410.0 79 4563.0 80 3558.5 81 2554.0 82 2554.0 83 1897.5 84 1241.0 85 918.0 86 595.0 87 460.5 88 326.0 89 326.0 90 257.0 91 188.0 92 131.0 93 74.0 94 55.5 95 37.0 96 37.0 97 22.0 98 7.0 99 5.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3421621.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.71677028441432 #Duplication Level Percentage of deduplicated Percentage of total 1 77.5516029973614 39.33166834405275 2 12.480305987271702 12.659216236713188 3 4.229864517907698 6.435752012667588 4 1.8971996221742238 3.8487934968595097 5 1.0157422055463083 2.5757582053438233 6 0.5936016491010123 1.8063335086743335 7 0.3930506280680172 1.3953980889709279 8 0.29226233991856754 1.1858081565148322 9 0.19891644592271016 0.9079559724288792 >10 1.1790423090375417 11.057680677456752 >50 0.10186729182125567 3.5754462527433715 >100 0.05893845643448572 5.540146883415032 >500 0.0037451569201340127 1.3134653607250937 >1k 0.0032265967289206846 3.157950843811978 >5k 4.033245911150856E-4 1.3160368860524507 >10k+ 2.3047119492290605E-4 3.8925890735694746 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 48749 1.424734066104925 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 35002 1.0229654307125189 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34991 1.0226439456620122 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14466 0.4227820673300754 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8112 0.2370806117918963 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6757 0.1974794987521996 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6745 0.1971287877880104 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6621 0.19350477449138873 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6011 0.1756769671451046 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5738 0.1676982927098004 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5052 0.14764931592365138 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4486 0.13110744877939431 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4442 0.12982150857736727 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3449 0.10080017629071132 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.9225913682432975E-5 0.0 0.0 0.0 5 0.0 2.9225913682432975E-5 0.0 0.0 0.0 6 0.0 2.9225913682432975E-5 0.0 0.0 0.0 7 2.9225913682432975E-5 5.845182736486595E-5 0.0 2.9225913682432975E-5 0.0 8 5.845182736486595E-5 5.845182736486595E-5 0.0 2.9225913682432975E-5 0.0 9 5.845182736486595E-5 5.845182736486595E-5 0.0 1.4612956841216488E-4 0.0 10 5.845182736486595E-5 5.845182736486595E-5 0.0 2.338073094594638E-4 0.0 11 5.845182736486595E-5 5.845182736486595E-5 0.0 3.214850505067627E-4 0.0 12 5.845182736486595E-5 5.845182736486595E-5 0.0 5.845182736486595E-4 0.0 13 8.767774104729893E-5 8.767774104729893E-5 0.0 5.845182736486595E-4 0.0 14 8.767774104729893E-5 8.767774104729893E-5 0.0 7.014219283783914E-4 5.845182736486595E-5 15 8.767774104729893E-5 8.767774104729893E-5 0.0 9.644551515202882E-4 5.845182736486595E-5 16 1.169036547297319E-4 8.767774104729893E-5 0.0 0.0015197475114865147 5.845182736486595E-5 17 1.7535548209459786E-4 8.767774104729893E-5 0.0 0.00216271761250004 5.845182736486595E-5 18 1.7535548209459786E-4 8.767774104729893E-5 0.0 0.0026595581451014007 5.845182736486595E-5 19 1.7535548209459786E-4 8.767774104729893E-5 0.0 0.0037701428650338538 5.845182736486595E-5 20 1.7535548209459786E-4 1.4612956841216488E-4 0.0 0.0065173787511825535 5.845182736486595E-5 21 1.7535548209459786E-4 1.7535548209459786E-4 0.0 0.0109012658035475 5.845182736486595E-5 22 1.7535548209459786E-4 2.0458139577703082E-4 0.0 0.01680490036739896 5.845182736486595E-5 23 1.7535548209459786E-4 2.338073094594638E-4 0.0 0.02039968775033822 5.845182736486595E-5 24 1.7535548209459786E-4 2.338073094594638E-4 0.0 0.02583570769527075 5.845182736486595E-5 25 1.7535548209459786E-4 2.9225913682432976E-4 0.0 0.029635076473987037 5.845182736486595E-5 26 1.7535548209459786E-4 3.214850505067627E-4 0.0 0.03670774758513582 5.845182736486595E-5 27 2.0458139577703082E-4 3.507109641891957E-4 0.0 0.08630412310422457 5.845182736486595E-5 28 2.0458139577703082E-4 3.507109641891957E-4 0.0 0.2166809240415581 5.845182736486595E-5 29 2.0458139577703082E-4 3.507109641891957E-4 0.0 0.40422361214173047 5.845182736486595E-5 30 2.338073094594638E-4 3.799368778716287E-4 0.0 0.6604179714819379 5.845182736486595E-5 31 2.338073094594638E-4 3.799368778716287E-4 0.0 1.067242689941405 5.845182736486595E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10770 0.0 23.567318 1 GTATTGG 835 0.0 17.502995 1 TTGGACC 1335 0.0 15.243446 4 GGACCCT 1255 0.0 14.888446 6 TATACCG 225 1.8189894E-12 14.8 5 ATTGGAC 980 0.0 14.346938 3 GTATCAA 17715 0.0 14.317527 2 CGCACTA 210 1.364242E-10 14.095238 29 GACCCTC 1325 0.0 13.683019 7 TGGACCC 1570 0.0 13.550956 5 GAACCGA 110 2.4585862E-4 13.454545 6 TACCGAC 525 0.0 13.390477 7 ATTAGAC 295 0.0 13.169492 3 CTAGTAC 410 0.0 13.085366 3 TCAGTAC 455 0.0 13.010988 3 TAGACAG 500 0.0 12.95 5 GTATTAG 530 0.0 12.915093 1 TAGTACT 560 0.0 12.883929 4 CTAATAC 590 0.0 12.855932 3 TACACTA 475 0.0 12.852632 5 >>END_MODULE