##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088510_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4085960 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.708591616168537 31.0 31.0 34.0 30.0 34.0 2 31.854973127490236 31.0 31.0 34.0 30.0 34.0 3 31.961297467425037 33.0 31.0 34.0 30.0 34.0 4 35.635534366464675 37.0 35.0 37.0 33.0 37.0 5 35.570794623540124 37.0 35.0 37.0 33.0 37.0 6 35.6343941203536 37.0 35.0 37.0 33.0 37.0 7 35.4788810952628 37.0 35.0 37.0 33.0 37.0 8 35.533980264123976 37.0 35.0 37.0 33.0 37.0 9 37.10519755455266 39.0 37.0 39.0 33.0 39.0 10 36.99234500582482 39.0 37.0 39.0 33.0 39.0 11 37.048092247599094 39.0 37.0 39.0 33.0 39.0 12 36.89951737168254 39.0 37.0 39.0 32.0 39.0 13 36.960682923964015 39.0 37.0 39.0 33.0 39.0 14 37.93060284486388 40.0 37.0 41.0 33.0 41.0 15 37.93694015604656 40.0 37.0 41.0 33.0 41.0 16 37.8296304907537 40.0 37.0 41.0 32.0 41.0 17 37.92768309038757 40.0 37.0 41.0 33.0 41.0 18 37.915272053568806 40.0 37.0 41.0 33.0 41.0 19 38.00289944101264 40.0 37.0 41.0 33.0 41.0 20 37.91289782572517 40.0 37.0 41.0 32.0 41.0 21 37.79163354511547 40.0 37.0 41.0 32.0 41.0 22 37.69125248411634 40.0 37.0 41.0 32.0 41.0 23 37.52344858980509 39.0 36.0 41.0 32.0 41.0 24 37.6521806380875 40.0 37.0 41.0 32.0 41.0 25 37.60034018933127 40.0 36.0 41.0 32.0 41.0 26 37.381435207393125 39.0 36.0 41.0 32.0 41.0 27 37.33851383762934 39.0 36.0 41.0 32.0 41.0 28 37.181202703893334 39.0 36.0 41.0 31.0 41.0 29 36.95479128527935 39.0 35.0 41.0 31.0 41.0 30 36.79049354374492 39.0 35.0 41.0 31.0 41.0 31 36.483111190515814 38.0 35.0 40.0 30.0 41.0 32 36.32217765225308 38.0 35.0 40.0 30.0 41.0 33 36.131971433885795 38.0 35.0 40.0 30.0 41.0 34 35.937672174960106 38.0 35.0 40.0 30.0 41.0 35 35.71435133970964 38.0 35.0 40.0 28.0 41.0 36 35.59584112424008 38.0 35.0 40.0 27.0 41.0 37 35.42592805607495 38.0 35.0 40.0 26.0 41.0 38 35.26249718548395 38.0 34.0 40.0 25.0 41.0 39 35.10095742493808 38.0 34.0 40.0 25.0 41.0 40 34.86297002418036 38.0 34.0 40.0 24.0 41.0 41 34.679361765656054 38.0 34.0 40.0 23.0 41.0 42 34.33043960293297 38.0 33.0 40.0 21.0 41.0 43 33.908168215058396 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 2.0 13 5.0 14 12.0 15 21.0 16 48.0 17 97.0 18 233.0 19 603.0 20 1264.0 21 2640.0 22 4834.0 23 8635.0 24 14285.0 25 22159.0 26 33166.0 27 47609.0 28 64551.0 29 85735.0 30 108173.0 31 131183.0 32 160090.0 33 198648.0 34 245157.0 35 302496.0 36 401291.0 37 599031.0 38 742057.0 39 911930.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.26046265749053 21.642453670618412 15.723648787555433 21.373434884335627 2 18.180329714436755 24.994811500846804 35.961756845392514 20.86310193932393 3 18.944360688797737 24.5597852157143 35.08531654739645 21.41053754809151 4 12.659130290066473 16.445315176849505 36.59350556539957 34.30204896768446 5 11.333444282371829 39.87126648327443 34.85589677823571 13.939392456118025 6 30.849592262283526 38.70123545017572 13.166012393660242 17.28315989388051 7 24.115997219747623 35.59936954840478 20.806224241059628 19.478408990787965 8 27.612580642003348 34.17507758274677 18.81315529275862 19.399186482491263 9 24.031096731245533 14.612257584508903 22.922201881565165 38.4344438026804 10 16.15926244995056 29.028110896827187 32.47165904707829 22.340967606143966 11 32.25217574327698 23.269953695092465 24.020793155096968 20.457077406533593 12 21.645170290458058 28.91753712713781 30.800962319748603 18.63633026265553 13 32.68800967214559 21.68677617989408 26.51837022388863 19.106843924071697 14 19.86916171475002 24.079702199727848 29.787100216350627 26.264035869171504 15 21.431854447914322 31.333370860214 26.48665185170682 20.748122840164857 16 20.139306307452838 29.312156751412154 27.572957150828692 22.975579790306316 17 20.766478379621926 27.687715983514277 27.75178905324575 23.79401658361805 18 22.454404839988644 25.46260854242332 31.541840840341067 20.541145777246964 19 21.937268108351525 24.889059119521484 33.38791862866988 19.78575414345711 20 22.862705459671655 24.509956044601513 32.63362832724746 19.993710168479378 21 21.47191847203595 25.347066540054236 33.824315460748515 19.356699527161304 22 19.53352455726439 26.228401648572188 33.17054009339299 21.067533700770444 23 21.225415814153834 26.05583510362314 33.797296106667716 18.921452975555315 24 20.496015624235188 26.225048703364696 31.629360052472364 21.649575619927752 25 20.474380561728456 26.600015663393673 33.039726282195616 19.88587749268226 26 19.877115781848083 27.807565419142627 32.786028252846336 19.529290546162958 27 18.42213335421786 27.694348451771432 32.624940038571104 21.258578155439604 28 19.479485849102783 27.276992432622933 32.25153941790913 20.99198230036515 29 19.5223888633271 27.13922799048449 31.267193021958118 22.07119012423029 30 19.73345309303077 27.582110446504615 33.6694926039413 19.014943856523313 31 20.979990014586537 27.44708709825843 32.91510440630843 18.657818480846604 32 20.07307952109174 27.291897130662075 31.88731656697569 20.747706781270498 33 19.574836758069093 27.07520386885824 32.809621239561814 20.54033813351085 34 18.567337908349568 27.879176497077797 33.57477802034283 19.9787075742298 35 17.86079648356812 30.52633897541826 32.13261999627994 19.480244544733676 36 20.9845666624245 27.832553426856848 31.641474708514032 19.541405202204622 37 19.790232895084632 29.12473445652919 31.440028781485868 19.64500386690031 38 19.400899666173924 27.03587406631489 33.12237515785764 20.440851109653547 39 18.94675914595346 26.74402098894752 33.881095262802376 20.428124602296645 40 17.46813478350253 27.08954566368736 33.836258798421916 21.6060607543882 41 18.941081165748074 26.239537342509472 34.06044112032423 20.758940371418223 42 18.053407277604283 28.2433014518008 33.051865412289885 20.651425858305025 43 17.90754192405212 28.331848574141695 32.285754143457105 21.474855358349078 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1823.0 1 1694.5 2 1566.0 3 3441.0 4 5316.0 5 5316.0 6 8157.0 7 10998.0 8 11899.5 9 12801.0 10 18940.5 11 25080.0 12 25080.0 13 45479.0 14 65878.0 15 115772.5 16 165667.0 17 150706.0 18 135745.0 19 135745.0 20 135560.5 21 135376.0 22 104460.5 23 73545.0 24 80473.5 25 87402.0 26 87402.0 27 95723.5 28 104045.0 29 108537.5 30 113030.0 31 120083.0 32 127136.0 33 127136.0 34 138188.0 35 149240.0 36 163376.0 37 177512.0 38 185438.5 39 193365.0 40 193365.0 41 198204.0 42 203043.0 43 211915.0 44 220787.0 45 240929.5 46 261072.0 47 261072.0 48 363869.5 49 466667.0 50 423753.0 51 380839.0 52 333103.0 53 285367.0 54 285367.0 55 246362.0 56 207357.0 57 171918.5 58 136480.0 59 119818.0 60 103156.0 61 103156.0 62 89569.5 63 75983.0 64 65484.5 65 54986.0 66 46253.5 67 37521.0 68 37521.0 69 31604.5 70 25688.0 71 21316.0 72 16944.0 73 13791.0 74 10638.0 75 10638.0 76 8514.0 77 6390.0 78 4913.0 79 3436.0 80 2713.0 81 1990.0 82 1990.0 83 1519.5 84 1049.0 85 803.5 86 558.0 87 406.5 88 255.0 89 255.0 90 196.0 91 137.0 92 97.5 93 58.0 94 40.5 95 23.0 96 23.0 97 15.0 98 7.0 99 5.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4085960.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.60237096429899 #Duplication Level Percentage of deduplicated Percentage of total 1 74.42686399123174 30.96334005472649 2 13.247512666318173 11.022558725968365 3 5.08595207179748 6.347629943926912 4 2.345726401264202 3.9035111970457352 5 1.3122004230319508 2.729532438924264 6 0.7976906849006307 1.991149427280106 7 0.5287672701576993 1.5398580488816216 8 0.37777992865674187 1.2573232587875345 9 0.2650407033679124 0.9923689495935558 >10 1.3836931771940368 10.736717318398755 >50 0.12804074816656355 3.7240206292617075 >100 0.08586416632419462 6.7636518208340535 >500 0.007610881033265763 2.169926613213084 >1k 0.005781909613405228 5.238838946829323 >5k 8.259870876293183E-4 2.1888017273564446 >10k+ 6.48989854565893E-4 8.430770898972204 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 90989 2.226869572878834 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 65621 1.606011806282979 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 64560 1.5800448364643802 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25707 0.6291544704304496 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 17318 0.423841643089996 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 16001 0.3916093158033852 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 14098 0.34503519368765234 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 13925 0.3408011825862221 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 12728 0.31150574161274214 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12143 0.2971884208362294 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10392 0.2543343547171289 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 9089 0.22244466416705008 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7856 0.19226815729963093 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7698 0.188401256987342 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 7506 0.18370223888633272 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 6704 0.1640740486935751 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6531 0.1598400375921448 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 5843 0.14300188939686145 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 5661 0.1385476118219464 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 5601 0.13707916866538097 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5485 0.13424017856268786 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5443 0.13321226835309205 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5321 0.1302264339347424 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 5239 0.12821956162076964 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 5198 0.1272161254637833 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4853 0.11877257731353219 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4738 0.11595806126344849 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 4695 0.11490567700124328 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4664 0.11414698137035115 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAAAAAAA 4424 0.10827320874408951 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4156 0.10171416264476402 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4112 0.10063730432994938 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 2.447405260942349E-5 0.0 0.0 0.0 0.0 5 2.447405260942349E-5 0.0 0.0 0.0 0.0 6 1.7131836826596444E-4 0.0 0.0 0.0 0.0 7 1.7131836826596444E-4 0.0 0.0 0.0 0.0 8 2.202664734848114E-4 0.0 0.0 0.0 0.0 9 2.202664734848114E-4 0.0 0.0 9.789621043769396E-5 0.0 10 2.202664734848114E-4 0.0 0.0 1.2237026304711744E-4 0.0 11 2.202664734848114E-4 0.0 0.0 4.160588943601993E-4 0.0 12 2.202664734848114E-4 0.0 0.0 5.139551047978933E-4 0.0 13 3.1816268392250536E-4 0.0 0.0 5.384291574073168E-4 0.0 14 3.1816268392250536E-4 0.0 0.0 6.852734730638577E-4 0.0 15 3.1816268392250536E-4 0.0 0.0 8.565918413298221E-4 0.0 16 3.426367365319289E-4 0.0 0.0 0.0012726507356900214 0.0 17 3.9158484175077585E-4 0.0 0.0 0.002153716629629267 0.0 18 4.160588943601993E-4 0.0 0.0 0.0026676717344271605 0.0 19 4.160588943601993E-4 0.0 0.0 0.0033284711548815945 0.0 20 4.160588943601993E-4 0.0 0.0 0.006191935310184143 0.0 21 4.160588943601993E-4 0.0 0.0 0.011845441462960968 0.0 22 4.160588943601993E-4 0.0 0.0 0.01886949456186551 0.0 23 4.160588943601993E-4 0.0 0.0 0.022907713242420386 0.0 24 4.405329469696228E-4 0.0 4.894810521884698E-5 0.02931991502608934 0.0 25 4.405329469696228E-4 0.0 4.894810521884698E-5 0.03279523049662748 0.0 26 4.894810521884697E-4 0.0 4.894810521884698E-5 0.03888926959637393 0.0 27 4.894810521884697E-4 0.0 4.894810521884698E-5 0.08512075497557489 0.0 28 5.139551047978933E-4 0.0 4.894810521884698E-5 0.21439270085854978 0.0 29 6.363253678450107E-4 0.0 4.894810521884698E-5 0.4237926949847771 0.0 30 6.852734730638577E-4 0.0 4.894810521884698E-5 0.7105796434620015 0.0 31 6.852734730638577E-4 0.0 4.894810521884698E-5 1.0558351036231388 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20355 0.0 23.785067 1 GTATTGG 1395 0.0 22.146954 1 ATTGGAC 1370 0.0 21.875912 3 TTGGACC 2110 0.0 19.902843 4 TGGACCC 2040 0.0 19.588236 5 GGACCCT 2045 0.0 19.26895 6 GACCCTC 2130 0.0 17.805164 7 TATTGGA 1835 0.0 16.735695 2 CGGTATA 210 9.094947E-12 14.97619 26 TATACAC 2410 0.0 14.96888 37 ATACTGT 2485 0.0 14.963783 37 GATACTG 2565 0.0 14.785576 36 ACCCTCG 2480 0.0 14.770161 8 TTTTTAC 2655 0.0 14.702449 1 CCCTCGC 2505 0.0 14.622754 9 TGATACT 2565 0.0 14.497077 35 GTATCAA 33460 0.0 14.491482 2 ACTCTGT 2235 0.0 14.154364 37 CCTCGCA 2655 0.0 13.796611 10 TACCGTG 275 0.0 13.454545 7 >>END_MODULE