##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088509_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6053969 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.738888983409066 31.0 31.0 34.0 30.0 34.0 2 31.89342677506277 31.0 31.0 34.0 30.0 34.0 3 32.01411586349385 33.0 31.0 34.0 30.0 34.0 4 35.68028957531828 37.0 35.0 37.0 35.0 37.0 5 35.60038579649152 37.0 35.0 37.0 33.0 37.0 6 35.649323609024094 37.0 35.0 37.0 33.0 37.0 7 35.50516479354288 37.0 35.0 37.0 33.0 37.0 8 35.54509050178486 37.0 35.0 37.0 33.0 37.0 9 37.14356234727994 39.0 37.0 39.0 33.0 39.0 10 37.00844685527792 39.0 37.0 39.0 33.0 39.0 11 37.06982840513389 39.0 37.0 39.0 33.0 39.0 12 36.923741763461294 39.0 37.0 39.0 33.0 39.0 13 36.97773345056772 39.0 37.0 39.0 33.0 39.0 14 38.004367713148184 40.0 37.0 41.0 33.0 41.0 15 38.01203854859514 40.0 37.0 41.0 33.0 41.0 16 37.90598399165903 40.0 37.0 41.0 33.0 41.0 17 37.94819679453264 40.0 37.0 41.0 33.0 41.0 18 37.92120970556671 40.0 37.0 41.0 33.0 41.0 19 37.98213832941662 40.0 37.0 41.0 33.0 41.0 20 37.88849975941403 40.0 37.0 41.0 32.0 41.0 21 37.752300020036444 40.0 37.0 41.0 32.0 41.0 22 37.64257101415617 40.0 37.0 41.0 32.0 41.0 23 37.46500370252969 39.0 36.0 41.0 32.0 41.0 24 37.61393872350519 39.0 37.0 41.0 32.0 41.0 25 37.574930099575994 40.0 37.0 41.0 32.0 41.0 26 37.36720158296153 39.0 36.0 41.0 31.0 41.0 27 37.329178923777114 39.0 36.0 41.0 31.0 41.0 28 37.18127000650317 39.0 36.0 41.0 31.0 41.0 29 36.9724058712557 39.0 36.0 41.0 31.0 41.0 30 36.840771236192325 39.0 35.0 41.0 30.0 41.0 31 36.58549127027244 39.0 35.0 40.0 30.0 41.0 32 36.429975442556774 38.0 35.0 40.0 30.0 41.0 33 36.25475056116078 38.0 35.0 40.0 30.0 41.0 34 36.061545904843584 38.0 35.0 40.0 30.0 41.0 35 35.86099879269286 38.0 35.0 40.0 29.0 41.0 36 35.80165953938648 38.0 35.0 40.0 28.0 41.0 37 35.65697610939203 38.0 35.0 40.0 27.0 41.0 38 35.52300449506762 38.0 35.0 40.0 26.0 41.0 39 35.39636294800981 38.0 35.0 40.0 25.0 41.0 40 35.207828946596855 38.0 34.0 40.0 25.0 41.0 41 35.07400467362816 38.0 34.0 40.0 24.0 41.0 42 34.77730411239304 38.0 34.0 40.0 23.0 41.0 43 34.40157605696362 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 7.0 13 7.0 14 17.0 15 29.0 16 54.0 17 130.0 18 347.0 19 835.0 20 1887.0 21 3975.0 22 7181.0 23 12788.0 24 20532.0 25 32606.0 26 48015.0 27 67428.0 28 92313.0 29 121773.0 30 153280.0 31 187795.0 32 230290.0 33 285048.0 34 353178.0 35 438300.0 36 581789.0 37 857684.0 38 1140445.0 39 1416230.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.39101141746844 21.271978763023068 14.548786093883203 22.788223725625286 2 18.17781029271871 23.981853887920472 35.819476445948105 22.020859373412716 3 19.01187468915021 24.555180246215333 33.67831913245674 22.754625932177717 4 12.949141298873515 16.32538917857029 36.84174795080715 33.88372157174905 5 12.026705125183165 39.1268604117398 35.03311629114718 13.813318171929852 6 31.395866083886453 38.30161667494498 13.729191543597267 16.573325697571295 7 25.467226541794318 34.093914256911454 21.335061345705604 19.103797855588624 8 27.400272449363385 34.34923436178811 19.025452558478577 19.22504063036993 9 24.532963416231564 14.518128520314525 22.105398953975484 38.843509109478426 10 16.071952135863267 28.256289386351334 33.178795596739924 22.492962881045475 11 32.98834202818019 22.956394391844427 23.79595931198194 20.259304267993443 12 21.395550588382598 27.737968265116653 31.023217991370622 19.84326315513013 13 31.974280013657157 21.09036237218922 26.393428839823923 20.5419287743297 14 20.314259950786003 22.90991248881519 28.787775424684202 27.988052135714604 15 22.247636220139217 30.255044252786888 25.74142682263487 21.755892704439024 16 21.272110907736728 28.66725944582802 26.86315374261084 23.197475903824415 17 21.45797244749684 27.247083690055234 27.396159445150776 23.898784417297147 18 22.81192718363771 25.545538802725947 30.252417876602937 21.390116137033406 19 22.44296262501509 24.90906378939172 31.817473792812617 20.83049979278057 20 23.345791826816424 24.58555701226749 31.151282736994524 20.917368423921562 21 22.09908904389831 25.335296563295913 32.015310947248 20.550303445557784 22 20.94072500206063 25.821853398985027 31.489325432621147 21.748096166333195 23 21.99978229158425 25.83620761850614 31.939592026321904 20.224418063587706 24 21.468610096946318 25.936323757191353 30.141664088468247 22.453402057394083 25 21.65141579020309 26.088372768344204 31.235871871824916 21.02433956962779 26 21.053064526759222 27.0486684024976 31.14639338258917 20.751873688154003 27 20.07643250237984 27.037849054066843 30.96692434335227 21.91879410020104 28 20.822092085374074 26.612623883604293 30.74989316925805 21.815390861763582 29 20.874074512109328 26.60732157696876 30.143910548600434 22.37469336232148 30 20.9629418320444 26.954482257837793 31.829961468253305 20.2526144418645 31 21.893868303587283 26.754266498556568 31.237887078708198 20.11397811914795 32 21.361853686399783 26.676268081319876 30.365913667546035 21.59596456473431 33 20.986876543305723 26.54960737327859 31.002586897950753 21.46092918546494 34 20.2303150214347 27.05671271194154 31.64566914696788 21.067303119655882 35 19.653800671922834 29.181252827690397 30.588544473881512 20.576402026505257 36 21.95832188767402 26.909156621053064 30.33852667564039 20.793994815632523 37 21.024620377144316 27.74075982219268 30.23013497426234 21.004484826400663 38 20.719233943880454 26.296798017961443 31.50039255239001 21.483575485768096 39 20.308891571793644 25.96428888221925 32.28680226145856 21.440017284528544 40 19.16579024438348 26.34688086443786 32.13615728788833 22.351171603290336 41 20.471446087682313 25.50254221651944 32.20412922497621 21.821882470822036 42 19.307895365833556 27.298438429400612 31.56966941852527 21.823996786240563 43 19.428097500994802 27.23704069181722 30.97054180488866 22.36432000229932 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1987.0 1 1879.5 2 1772.0 3 4117.5 4 6463.0 5 6463.0 6 9637.5 7 12812.0 8 13556.0 9 14300.0 10 21637.5 11 28975.0 12 28975.0 13 52377.5 14 75780.0 15 129277.0 16 182774.0 17 167751.0 18 152728.0 19 152728.0 20 154053.5 21 155379.0 22 123417.5 23 91456.0 24 102227.0 25 112998.0 26 112998.0 27 125801.5 28 138605.0 29 148890.5 30 159176.0 31 173943.5 32 188711.0 33 188711.0 34 207662.0 35 226613.0 36 247250.5 37 267888.0 38 285167.5 39 302447.0 40 302447.0 41 314649.0 42 326851.0 43 343379.0 44 359907.0 45 383988.0 46 408069.0 47 408069.0 48 525361.0 49 642653.0 50 592929.5 51 543206.0 52 488447.5 53 433689.0 54 433689.0 55 383125.0 56 332561.0 57 283577.5 58 234594.0 59 209795.5 60 184997.0 61 184997.0 62 163307.5 63 141618.0 64 122626.0 65 103634.0 66 89441.0 67 75248.0 68 75248.0 69 63984.0 70 52720.0 71 44984.5 72 37249.0 73 30671.5 74 24094.0 75 24094.0 76 19235.0 77 14376.0 78 11261.0 79 8146.0 80 6479.0 81 4812.0 82 4812.0 83 3582.5 84 2353.0 85 1804.0 86 1255.0 87 919.5 88 584.0 89 584.0 90 442.5 91 301.0 92 207.0 93 113.0 94 80.5 95 48.0 96 48.0 97 34.5 98 21.0 99 13.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 6053969.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.73612609139984 #Duplication Level Percentage of deduplicated Percentage of total 1 72.7229444233023 28.897280893422028 2 13.50710013508252 10.734396681936056 3 5.332479712245639 6.356762586768728 4 2.6215080790115985 4.16674302308913 5 1.460459939137731 2.9016510146507515 6 0.9252424291356327 2.2059329897547952 7 0.6270274233749109 1.7440948530593705 8 0.42526109310881394 1.3518582734030686 9 0.30895608253888845 1.1049046067223187 >10 1.7693836575830717 13.208508422223808 >50 0.17280416347585376 4.786684202387805 >100 0.11356654030075859 8.304169525883296 >500 0.007676115354480504 2.119782520898323 >1k 0.0042969496555354866 3.558871359804446 >5k 7.92641198589009E-4 1.9634414934742515 >10k+ 5.006154938456899E-4 6.59491755252182 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 99838 1.6491329902746446 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 73204 1.209190202328423 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 71827 1.1864447934900229 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30404 0.5022159842576003 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 19409 0.32059959342375227 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 19010 0.3140088758300546 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 17587 0.2905036348881205 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 15748 0.2601268688359653 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 15649 0.25849157800444633 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12589 0.20794622503022397 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 12074 0.19943940908848393 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 10494 0.17334082814100965 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 9691 0.16007680250757808 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8945 0.1477543079589605 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7928 0.1309554112351748 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 6986 0.11539537120193381 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6868 0.11344623667547686 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 6323 0.10444387805751895 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6213 0.10262688824472012 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.303617841452442E-5 0.0 2 0.0 0.0 0.0 3.303617841452442E-5 0.0 3 0.0 0.0 0.0 4.955426762178663E-5 0.0 4 0.0 0.0 0.0 4.955426762178663E-5 0.0 5 0.0 0.0 0.0 1.3214471365809768E-4 0.0 6 3.303617841452442E-5 0.0 0.0 1.3214471365809768E-4 0.0 7 3.303617841452442E-5 0.0 0.0 1.3214471365809768E-4 0.0 8 3.303617841452442E-5 0.0 0.0 1.3214471365809768E-4 0.0 9 3.303617841452442E-5 0.0 0.0 1.9821707048714652E-4 0.0 10 3.303617841452442E-5 0.0 0.0 2.4777133810893314E-4 1.651808920726221E-5 11 3.303617841452442E-5 0.0 0.0 3.303617841452442E-4 1.651808920726221E-5 12 3.303617841452442E-5 0.0 0.0 4.2947031938881747E-4 1.651808920726221E-5 13 3.303617841452442E-5 0.0 0.0 5.285788546323907E-4 1.651808920726221E-5 14 9.910853524357326E-5 0.0 0.0 5.781331222541774E-4 1.651808920726221E-5 15 9.910853524357326E-5 0.0 0.0 8.259044603631105E-4 1.651808920726221E-5 16 1.1562662445083548E-4 0.0 0.0 0.0012223386013374036 3.303617841452442E-5 17 1.1562662445083548E-4 0.0 0.0 0.0016848450991407454 3.303617841452442E-5 18 1.1562662445083548E-4 0.0 0.0 0.0020647611509077763 3.303617841452442E-5 19 1.1562662445083548E-4 0.0 0.0 0.002758520897612789 3.303617841452442E-5 20 1.1562662445083548E-4 0.0 0.0 0.004757209691691517 3.303617841452442E-5 21 1.3214471365809768E-4 0.0 0.0 0.008837177725885282 3.303617841452442E-5 22 1.3214471365809768E-4 0.0 0.0 0.01501494308940135 3.303617841452442E-5 23 1.3214471365809768E-4 0.0 0.0 0.017889090611464976 3.303617841452442E-5 24 1.3214471365809768E-4 0.0 0.0 0.022382010875840297 3.303617841452442E-5 25 1.3214471365809768E-4 0.0 0.0 0.02517356795186761 3.303617841452442E-5 26 1.3214471365809768E-4 0.0 1.651808920726221E-5 0.0312522247801401 3.303617841452442E-5 27 1.3214471365809768E-4 0.0 1.651808920726221E-5 0.0722996764601867 4.955426762178663E-5 28 1.3214471365809768E-4 0.0 1.651808920726221E-5 0.1739685155308856 4.955426762178663E-5 29 1.3214471365809768E-4 0.0 1.651808920726221E-5 0.324993405152884 4.955426762178663E-5 30 1.486628028653599E-4 0.0 1.651808920726221E-5 0.5281328662237946 4.955426762178663E-5 31 1.486628028653599E-4 0.0 1.651808920726221E-5 0.7982531790301536 4.955426762178663E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22560 0.0 23.617022 1 GTATTGG 1805 0.0 20.396122 1 ATTGGAC 1950 0.0 18.40513 3 TTGGACC 2620 0.0 17.864504 4 GGACCCT 2700 0.0 16.787037 6 TGGACCC 2915 0.0 16.056604 5 GACCCTC 2885 0.0 15.646447 7 GTATCAA 37260 0.0 14.289587 2 TATTGGA 2670 0.0 14.134831 2 ACGTTCG 485 0.0 14.113402 22 GATACCT 2370 0.0 13.972573 36 CCCTCGC 3095 0.0 13.927301 9 ACCCTCG 3235 0.0 13.839258 8 TAATACT 1215 0.0 13.551441 4 CTAATAC 985 0.0 13.522841 3 CGTTCGC 575 0.0 13.513043 23 CCTCGCA 3205 0.0 13.333854 10 GTATTAG 960 0.0 13.296876 1 ACCGTTA 335 0.0 13.253732 8 CTAGTAC 830 0.0 13.150602 3 >>END_MODULE