##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088508_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5084344 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.673353533907225 31.0 31.0 34.0 30.0 34.0 2 31.834090297588048 31.0 31.0 34.0 30.0 34.0 3 31.952330723491567 31.0 31.0 34.0 30.0 34.0 4 35.640607716551045 37.0 35.0 37.0 33.0 37.0 5 35.5537550173631 37.0 35.0 37.0 33.0 37.0 6 35.60058446084687 37.0 35.0 37.0 33.0 37.0 7 35.453201632304975 37.0 35.0 37.0 33.0 37.0 8 35.493739408663146 37.0 35.0 37.0 33.0 37.0 9 37.082707621671545 39.0 37.0 39.0 33.0 39.0 10 36.93783996519512 39.0 37.0 39.0 33.0 39.0 11 37.00097220015011 39.0 37.0 39.0 33.0 39.0 12 36.850525062820296 39.0 37.0 39.0 32.0 39.0 13 36.904664790580654 39.0 37.0 39.0 33.0 39.0 14 37.9179725054009 40.0 37.0 41.0 33.0 41.0 15 37.92638834036406 40.0 37.0 41.0 33.0 41.0 16 37.81247511970079 40.0 37.0 41.0 32.0 41.0 17 37.85733970793479 40.0 37.0 41.0 32.0 41.0 18 37.82884635658012 40.0 37.0 41.0 32.0 41.0 19 37.896568367521944 40.0 37.0 41.0 32.0 41.0 20 37.79461932552164 40.0 37.0 41.0 32.0 41.0 21 37.66408016452073 40.0 37.0 41.0 32.0 41.0 22 37.547562478069935 39.0 36.0 41.0 32.0 41.0 23 37.380102329818754 39.0 36.0 41.0 31.0 41.0 24 37.52616129042409 39.0 36.0 41.0 32.0 41.0 25 37.4819650283301 39.0 36.0 41.0 32.0 41.0 26 37.27335601210304 39.0 36.0 41.0 31.0 41.0 27 37.23369622511773 39.0 36.0 41.0 31.0 41.0 28 37.08474446260914 39.0 36.0 41.0 31.0 41.0 29 36.87127031530518 39.0 35.0 41.0 30.0 41.0 30 36.744717705961676 39.0 35.0 40.0 30.0 41.0 31 36.49486954462562 39.0 35.0 40.0 30.0 41.0 32 36.34067738138883 38.0 35.0 40.0 30.0 41.0 33 36.173978983326066 38.0 35.0 40.0 30.0 41.0 34 35.98466645844577 38.0 35.0 40.0 29.0 41.0 35 35.7939063525206 38.0 35.0 40.0 28.0 41.0 36 35.729785199427894 38.0 35.0 40.0 27.0 41.0 37 35.58985387298735 38.0 35.0 40.0 27.0 41.0 38 35.4508174505895 38.0 35.0 40.0 26.0 41.0 39 35.32408743389511 38.0 34.0 40.0 25.0 41.0 40 35.14415370006436 38.0 34.0 40.0 25.0 41.0 41 35.01037341297127 38.0 34.0 40.0 24.0 41.0 42 34.730005876864354 38.0 34.0 40.0 23.0 41.0 43 34.340922447418976 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 4.0 13 6.0 14 3.0 15 22.0 16 66.0 17 143.0 18 357.0 19 763.0 20 1703.0 21 3414.0 22 6500.0 23 11012.0 24 18193.0 25 28163.0 26 41225.0 27 57996.0 28 79362.0 29 104652.0 30 131571.0 31 161378.0 32 198861.0 33 246087.0 34 304107.0 35 379615.0 36 498642.0 37 724016.0 38 967978.0 39 1118499.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.23945980051704 21.334945078460464 14.598913842179051 22.82668127884345 2 18.43221072374332 24.0002053362243 35.37732694719319 22.190256992839196 3 19.049320817002155 24.436308794212195 33.78248993380464 22.731880454981017 4 13.236594534122789 16.626609057136967 36.675193495955426 33.46160291278481 5 12.066591088250519 39.151815848809605 35.049300362052605 13.732292700887271 6 31.521057583829894 38.432608021801826 13.847548474296783 16.198785920071497 7 25.49801901680925 34.148476184931624 21.25945844734345 19.094046350915676 8 27.398696862368084 34.40671992296351 19.01995616346966 19.17462705119874 9 24.667744747404974 14.452700289358864 21.887150043348758 38.992404919887406 10 16.258537974613834 28.39058490141501 33.00850611209627 22.342371011874885 11 33.36339948673811 22.945575673085848 23.411220798592698 20.27980404158334 12 21.441350152546722 27.883636512399633 30.701286144289213 19.973727190764436 13 31.85992135858628 21.168787949831877 26.06013676493959 20.911153926642257 14 20.48319311203176 22.93344038090263 28.57151286380308 28.011853643262537 15 22.545681409440434 30.405967810203244 25.269572633165655 21.77877814719067 16 21.40671441586171 28.62027038296386 26.6658589584025 23.307156242771928 17 21.60178382894627 27.43437501475117 27.272525226459894 23.69131592984267 18 22.72753377820226 25.691632981560648 30.00756833133242 21.57326490890467 19 22.57115175527069 25.098557454019634 31.49696401344992 20.83332677725976 20 23.29053659626493 24.920678065842907 30.76172658655669 21.027058751335474 21 22.24692113672875 25.52260429270718 31.499402872818994 20.731071697745076 22 21.08793189445875 26.13434496170991 31.006890957810878 21.77083218602046 23 22.10062891102569 26.039976838703282 31.448127821406263 20.411266428864767 24 21.553104982668366 26.2022003231882 29.887002138328956 22.357692555814477 25 21.727542432219376 26.152321715446476 30.982600705223724 21.137535147110423 26 21.12164322477 27.245796114503662 30.8313127514582 20.801247909268135 27 20.222294164202896 27.15363083221749 30.57002043921497 22.054054564364645 28 20.905489479075374 26.875954892115878 30.444124158396836 21.774431470411916 29 21.03205447939793 26.840276739732793 29.780066022283307 22.347602758585968 30 21.03913503885654 27.174321800413193 31.365639303713515 20.420903857016757 31 21.802301339169812 26.95645691951607 30.956874672524126 20.284367068789997 32 21.175337467331083 26.8780200552913 30.172427357393598 21.774215119984014 33 20.861275318900528 26.758181586454416 30.83150943366538 21.549033660979667 34 20.286904269262664 27.161989826022786 31.41602928519392 21.13507661952063 35 19.772245937725692 29.076592771850212 30.416057607431757 20.73510368299234 36 21.839159584795993 27.178137435232546 30.048320884660836 20.934382095310625 37 20.86438289777403 27.846561916345554 30.133110584177626 21.155944601702796 38 20.66325567270822 26.462351878629768 31.281656001246176 21.59273644741583 39 20.19330320686405 26.28533789216465 32.00420742577607 21.517151475195227 40 19.246258711054956 26.483377206577686 32.020886076945224 22.249478005422134 41 20.20119016337211 25.730733404348722 32.10205682384984 21.966019608429328 42 19.37359077198553 27.216352788088294 31.463056000931488 21.94700043899469 43 19.262603002471902 27.037037619799133 31.07588707609084 22.624472301638125 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1866.0 1 1734.0 2 1602.0 3 3398.0 4 5194.0 5 5194.0 6 7868.0 7 10542.0 8 11052.0 9 11562.0 10 17364.5 11 23167.0 12 23167.0 13 42106.0 14 61045.0 15 105679.0 16 150313.0 17 138257.5 18 126202.0 19 126202.0 20 127768.5 21 129335.0 22 102553.0 23 75771.0 24 84335.0 25 92899.0 26 92899.0 27 103712.5 28 114526.0 29 123047.0 30 131568.0 31 145832.0 32 160096.0 33 160096.0 34 177364.0 35 194632.0 36 211748.0 37 228864.0 38 244403.0 39 259942.0 40 259942.0 41 271465.0 42 282988.0 43 298260.5 44 313533.0 45 330260.0 46 346987.0 47 346987.0 48 430494.5 49 514002.0 50 478241.5 51 442481.0 52 399172.5 53 355864.0 54 355864.0 55 316685.5 56 277507.0 57 241168.5 58 204830.0 59 183666.5 60 162503.0 61 162503.0 62 143230.0 63 123957.0 64 106462.0 65 88967.0 66 76252.0 67 63537.0 68 63537.0 69 54554.5 70 45572.0 71 39178.0 72 32784.0 73 26941.5 74 21099.0 75 21099.0 76 16971.0 77 12843.0 78 10017.5 79 7192.0 80 5667.0 81 4142.0 82 4142.0 83 3150.5 84 2159.0 85 1636.5 86 1114.0 87 862.5 88 611.0 89 611.0 90 469.0 91 327.0 92 230.5 93 134.0 94 96.0 95 58.0 96 58.0 97 39.0 98 20.0 99 13.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5084344.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.258293305925946 #Duplication Level Percentage of deduplicated Percentage of total 1 73.74699521997647 31.16422154436484 2 13.300109792653195 11.240798812379134 3 5.207797829237164 6.6021794443760555 4 2.4069309963107086 4.068511840368899 5 1.346007498472873 2.8439989831221166 6 0.8396045873282201 2.1288154147390106 7 0.5621786442931537 1.662969702860753 8 0.3734197129321235 1.2624063804240275 9 0.2903727333813178 1.1043590521744047 >10 1.666387906939589 13.286793879907496 >50 0.15586112175233907 4.5878379155865066 >100 0.09243878305965283 7.338651417498511 >500 0.0065773319932177126 1.8641163298862367 >1k 0.004478182459027748 4.015581618293332 >5k 4.1982960553378466E-4 1.205638428509671 >10k+ 4.1982960553378466E-4 5.623119235508817 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 82194 1.6166097337237606 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 60641 1.1927005725812416 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 57877 1.1383376105157323 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23905 0.4701688162720697 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 14162 0.2785413418132211 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13606 0.26760581109382053 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11290 0.22205421191013036 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11245 0.22116914197780482 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10336 0.20329072934482795 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 9858 0.1938893198414584 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9174 0.1804362568701095 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 7341 0.14438440829338062 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6997 0.13761854036626947 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6624 0.13028229403832628 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 5705 0.11220719919816599 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5241 0.10308114478485328 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5138 0.1010553180508636 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 3.933644143669272E-5 0.0 0.0 0.0 0.0 6 9.834110359173179E-5 0.0 0.0 0.0 0.0 7 9.834110359173179E-5 0.0 0.0 0.0 0.0 8 9.834110359173179E-5 0.0 0.0 0.0 0.0 9 9.834110359173179E-5 0.0 0.0 9.834110359173179E-5 0.0 10 9.834110359173179E-5 0.0 0.0 9.834110359173179E-5 0.0 11 9.834110359173179E-5 0.0 0.0 1.3767754502842452E-4 0.0 12 9.834110359173179E-5 0.0 0.0 2.1635042790180996E-4 0.0 13 9.834110359173179E-5 0.0 0.0 2.1635042790180996E-4 0.0 14 1.1800932431007816E-4 0.0 0.0 3.343597522118881E-4 0.0 15 1.1800932431007816E-4 0.0 0.0 4.720372972403126E-4 0.0 16 1.1800932431007816E-4 0.0 0.0 8.850699323255861E-4 0.0 17 1.1800932431007816E-4 0.0 0.0 0.0011407568016640888 0.0 18 1.1800932431007816E-4 0.0 0.0 0.0013571072295658988 0.0 19 1.1800932431007816E-4 0.0 0.0 0.0019471538511162895 0.0 20 1.1800932431007816E-4 0.0 0.0 0.003009237769906993 0.0 21 1.1800932431007816E-4 0.0 0.0 0.005113737386770054 0.0 22 1.1800932431007816E-4 0.0 0.0 0.008142643377395392 0.0 23 1.1800932431007816E-4 0.0 0.0 0.010168470111385067 0.0 24 1.1800932431007816E-4 0.0 0.0 0.013118703219137022 0.0 25 1.1800932431007816E-4 0.0 0.0 0.0154002168224652 0.0 26 1.1800932431007816E-4 0.0 0.0 0.020120589794868325 0.0 27 1.1800932431007816E-4 0.0 0.0 0.059162007920785846 0.0 28 1.1800932431007816E-4 0.0 0.0 0.15445453730117395 0.0 29 1.1800932431007816E-4 0.0 0.0 0.30530979021089055 0.0 30 1.3767754502842452E-4 0.0 0.0 0.5099576267852844 0.0 31 1.3767754502842452E-4 0.0 0.0 0.7761866624288207 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18570 0.0 23.65051 1 GTATTGG 1455 0.0 19.707905 1 ATTGGAC 1605 0.0 18.78816 3 TTGGACC 2235 0.0 16.803131 4 GGACCCT 2165 0.0 16.491917 6 CTAATAC 1055 0.0 15.781991 3 TGGACCC 2270 0.0 15.7290745 5 GACCCTC 2215 0.0 15.61851 7 GTATCAA 30175 0.0 14.505716 2 TAATACT 1315 0.0 14.34981 4 TATTGGA 1990 0.0 14.316583 2 TCTAACG 305 0.0 13.95082 2 ACCCTCG 2550 0.0 13.711764 8 TGTTACG 230 4.0017767E-11 13.673913 16 CCCTCGC 2460 0.0 13.536585 9 TCTACAC 745 0.0 13.409395 3 GATACCT 1805 0.0 13.221606 36 CCGTTTA 365 0.0 13.178082 27 CCTCGCA 2525 0.0 13.114852 10 CGTTTAC 410 0.0 13.085365 28 >>END_MODULE