##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088507_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 629474 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.7980250177132 31.0 31.0 34.0 30.0 34.0 2 31.96724566860585 31.0 31.0 34.0 30.0 34.0 3 32.11313731782409 33.0 31.0 34.0 30.0 34.0 4 35.758523783349276 37.0 35.0 37.0 35.0 37.0 5 35.65721538935683 37.0 35.0 37.0 33.0 37.0 6 35.69476261132311 37.0 35.0 37.0 33.0 37.0 7 35.56895757410155 37.0 35.0 37.0 33.0 37.0 8 35.58310589476293 37.0 35.0 37.0 33.0 37.0 9 37.21388492614469 39.0 37.0 39.0 33.0 39.0 10 37.065842274661065 39.0 37.0 39.0 33.0 39.0 11 37.126764568512755 39.0 37.0 39.0 33.0 39.0 12 36.99084632566238 39.0 37.0 39.0 33.0 39.0 13 37.03558844368473 39.0 37.0 39.0 33.0 39.0 14 38.12754140758792 40.0 37.0 41.0 33.0 41.0 15 38.12672167555769 40.0 37.0 41.0 33.0 41.0 16 38.03228727477227 40.0 37.0 41.0 33.0 41.0 17 38.02145124341911 40.0 37.0 41.0 33.0 41.0 18 37.97533178495061 40.0 37.0 41.0 33.0 41.0 19 38.0189412112335 40.0 37.0 41.0 33.0 41.0 20 37.917330977927605 40.0 37.0 41.0 32.0 41.0 21 37.77855797062309 40.0 37.0 41.0 32.0 41.0 22 37.661835119480706 40.0 37.0 41.0 32.0 41.0 23 37.49407918357232 39.0 36.0 41.0 32.0 41.0 24 37.66270092172194 40.0 37.0 41.0 32.0 41.0 25 37.62613864909432 40.0 37.0 41.0 32.0 41.0 26 37.4474068825718 39.0 36.0 41.0 32.0 41.0 27 37.41386935759062 39.0 36.0 41.0 32.0 41.0 28 37.27615278788322 39.0 36.0 41.0 31.0 41.0 29 37.08602102707975 39.0 36.0 41.0 31.0 41.0 30 36.9837070315851 39.0 36.0 41.0 31.0 41.0 31 36.768827624333966 39.0 35.0 41.0 30.0 41.0 32 36.63244073623375 39.0 35.0 41.0 30.0 41.0 33 36.48776597603714 39.0 35.0 40.0 30.0 41.0 34 36.31338069562841 39.0 35.0 40.0 30.0 41.0 35 36.14924842010949 38.0 35.0 40.0 29.0 41.0 36 36.129347677584775 39.0 35.0 40.0 29.0 41.0 37 36.01195283681296 38.0 35.0 40.0 28.0 41.0 38 35.899104649278605 38.0 35.0 40.0 27.0 41.0 39 35.79820612130128 39.0 35.0 40.0 27.0 41.0 40 35.67731312174927 38.0 35.0 40.0 26.0 41.0 41 35.586940842671815 38.0 35.0 40.0 26.0 41.0 42 35.36374020213702 38.0 34.0 40.0 25.0 41.0 43 35.02529572309579 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 2.0 16 3.0 17 11.0 18 34.0 19 100.0 20 197.0 21 353.0 22 717.0 23 1142.0 24 1981.0 25 2995.0 26 4438.0 27 6299.0 28 8751.0 29 11515.0 30 14907.0 31 18375.0 32 22718.0 33 28407.0 34 35305.0 35 44656.0 36 59246.0 37 85427.0 38 122728.0 39 159165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.64345787117498 21.339086284739324 13.993429434734397 24.024026409351297 2 18.009639794495087 23.16521413116348 35.92872779495261 22.896418279388822 3 18.58535856921811 24.45073188090374 32.8863463780871 24.07756317179105 4 13.359090288081795 16.653904688676576 37.11241449209975 32.87459053114187 5 12.37906569612089 38.54456260306224 35.61179651582115 13.464575184995727 6 31.699641287805374 38.589203048894795 14.515611447017667 15.195544216282167 7 25.9570689178584 33.30892141692905 22.06493040220883 18.669079263003717 8 26.375195798396756 35.18636194664116 19.805107121183717 18.63333513377836 9 24.965447341748824 14.736748459825188 21.56753098618847 38.73027321223752 10 15.816380025227412 28.154300257040006 34.08734912005897 21.941970597673613 11 33.364205670130936 22.86782297600854 23.483257449870845 20.28471390398968 12 20.60466357625573 27.36379898137175 31.48184039372556 20.549697048646966 13 30.563931155218484 21.541795213146216 26.04666753511662 21.847606096518682 14 20.4958425606141 22.543901733828562 28.113790243917936 28.846465461639397 15 22.633182625493667 30.106882889523632 25.00659280605712 22.25334167892558 16 21.760072695615705 28.77021131929198 26.20600692006342 23.2637090650289 17 21.420106310983456 27.784467666655015 27.254977965730117 23.540448056631412 18 22.47368437775031 26.509752587080644 29.32940836317306 21.687154671995984 19 22.616660894651723 25.847612451030543 30.247635327273247 21.288091327044484 20 23.139001769731554 25.80646698672225 29.780102117005626 21.27442912654057 21 22.303860048230746 26.31689315206029 30.016966546672304 21.362280253036662 22 21.557840355598483 26.53580608571601 29.923872947889823 21.98248061079568 23 22.16374306166736 26.590931476121334 30.174399578060413 21.070925884150896 24 21.992330104182223 26.639861217460926 28.877602569764598 22.490206108592254 25 21.945147853604755 26.647645494492227 29.82124758131392 21.585959070589094 26 21.714796798596925 27.342352503836537 29.443471851101076 21.49937884646546 27 20.94621858885355 27.471984545827148 29.340687621728616 22.24110924359068 28 21.37848425828549 27.098656973917905 29.473655782446933 22.049202985349673 29 21.536235015266712 26.971725599468765 29.09858071977556 22.393458665488964 30 21.501126337227593 27.253707063357663 29.949767583728637 21.29539901568611 31 22.242062420370022 27.065136923844353 29.679541966784967 21.013258689000658 32 21.547673136618826 26.928356056008667 29.253471946418756 22.27049886095375 33 21.34083377550145 26.79093973698675 29.956280958387477 21.911945529124317 34 21.097455971175936 26.87402497958613 30.295929617426616 21.732589431811324 35 20.6229327978598 28.091708315196495 29.65666572408074 21.628693162862962 36 22.18518953920257 26.776006634110384 29.325436793259136 21.71336703342791 37 21.444094593263582 26.937887823802093 29.580252718936762 22.037764863997563 38 21.17784054623384 26.063506991551677 30.575369276570598 22.183283185643887 39 20.749228721122716 25.940388324219903 31.14775193256592 22.16263102209146 40 20.10281600193177 26.09432637408376 31.240686668551838 22.56217095543263 41 20.861385855492045 25.386274889828652 31.258002713376566 22.49433654130274 42 19.817498419315175 26.835739045615863 30.807626685137112 22.53913584993185 43 19.919647197501405 26.461934885316946 30.577116767332726 23.041301149848923 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 244.0 1 216.0 2 188.0 3 376.5 4 565.0 5 565.0 6 777.0 7 989.0 8 1068.5 9 1148.0 10 1690.0 11 2232.0 12 2232.0 13 3863.5 14 5495.0 15 9291.5 16 13088.0 17 12380.5 18 11673.0 19 11673.0 20 12332.5 21 12992.0 22 11259.5 23 9527.0 24 10888.0 25 12249.0 26 12249.0 27 13816.5 28 15384.0 29 16880.5 30 18377.0 31 20337.0 32 22297.0 33 22297.0 34 24677.5 35 27058.0 36 29334.0 37 31610.0 38 33081.5 39 34553.0 40 34553.0 41 35703.0 42 36853.0 43 38482.0 44 40111.0 45 41496.0 46 42881.0 47 42881.0 48 50021.5 49 57162.0 50 53936.0 51 50710.0 52 46918.0 53 43126.0 54 43126.0 55 39572.0 56 36018.0 57 31936.5 58 27855.0 59 25158.5 60 22462.0 61 22462.0 62 19828.5 63 17195.0 64 14709.0 65 12223.0 66 10282.0 67 8341.0 68 8341.0 69 7079.0 70 5817.0 71 4749.5 72 3682.0 73 2993.5 74 2305.0 75 2305.0 76 1829.5 77 1354.0 78 1071.5 79 789.0 80 628.5 81 468.0 82 468.0 83 352.5 84 237.0 85 174.5 86 112.0 87 79.0 88 46.0 89 46.0 90 40.5 91 35.0 92 25.0 93 15.0 94 10.0 95 5.0 96 5.0 97 2.5 98 0.0 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 629474.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.87086265556746 #Duplication Level Percentage of deduplicated Percentage of total 1 87.05257011724252 58.212804601242816 2 7.610476121341985 10.178382069074713 3 2.1139654885278576 4.240880875258679 4 0.9335077694732633 2.4969787936140695 5 0.5414253601631439 1.8102790448855373 6 0.36233156603420685 1.4537654632830073 7 0.23352862233849508 1.0931382301378976 8 0.18169604090015695 0.9720136796875811 9 0.13309297221080182 0.8010037678616808 >10 0.7656330623506301 9.16048600727749 >50 0.04349154628366068 1.9813102051469405 >100 0.025191775732212887 3.336453179338033 >500 0.0014259495697327132 0.7601341124456724 >1k 0.0011882913081105943 1.6277009365813457 >5k 4.753165232442377E-4 1.8746690341645729 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6748 1.0720061511674828 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 5048 0.8019393970203693 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4888 0.7765213495712293 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2028 0.3221737514178505 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1201 0.19079421866510768 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1079 0.1714129574851384 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1046 0.16617048519875324 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 975 0.15489122664319735 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 947 0.15044306833959784 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 890 0.14138788893584167 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 724 0.11501666470735886 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 641 0.10183105259311742 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 4.765883896713764E-4 0.0 10 0.0 0.0 0.0 7.943139827856273E-4 0.0 11 0.0 0.0 0.0 7.943139827856273E-4 0.0 12 0.0 0.0 0.0 7.943139827856273E-4 0.0 13 0.0 0.0 0.0 7.943139827856273E-4 0.0 14 0.0 0.0 0.0 9.531767793427528E-4 0.0 15 0.0 0.0 0.0 0.0012709023724570038 0.0 16 1.5886279655712547E-4 0.0 0.0 0.0015886279655712547 0.0 17 1.5886279655712547E-4 0.0 0.0 0.0019063535586855056 0.0 18 1.5886279655712547E-4 0.0 0.0 0.0019063535586855056 0.0 19 1.5886279655712547E-4 0.0 0.0 0.002382941948356882 0.0 20 1.5886279655712547E-4 0.0 0.0 0.0041304327104852625 0.0 21 1.5886279655712547E-4 0.0 0.0 0.007943139827856273 0.0 22 1.5886279655712547E-4 0.0 0.0 0.01016721897965603 0.0 23 1.5886279655712547E-4 0.0 0.0 0.01191470974178441 0.0 24 1.5886279655712547E-4 0.0 0.0 0.015250828469484045 0.0 25 1.5886279655712547E-4 0.0 0.0 0.01763377041784093 0.0 26 1.5886279655712547E-4 0.0 0.0 0.02176420312832619 0.0 27 1.5886279655712547E-4 0.0 0.0 0.054966527608765414 0.0 28 1.5886279655712547E-4 0.0 0.0 0.1521905591017262 0.0 29 1.5886279655712547E-4 0.0 0.0 0.27658012880595545 0.0 30 1.5886279655712547E-4 0.0 0.0 0.4516469306119077 0.0 31 1.5886279655712547E-4 0.0 0.0 0.7472905950047182 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCA 25 0.0054944786 29.599998 4 GTACTAG 50 9.08256E-6 25.899998 1 GGTATCA 1265 0.0 23.837946 1 TATACCG 40 0.0019302217 23.125002 5 TAGAACC 60 3.722839E-5 21.583334 4 TCTAAAC 80 6.949831E-7 20.8125 3 CGTTCGC 55 5.139543E-4 20.181818 23 TACACTA 70 1.2180857E-4 18.5 5 GTTTAGG 100 2.8698014E-7 18.499998 1 ATGCGAC 50 0.0070314337 18.499998 21 GGACCCT 190 0.0 17.526316 6 CTAATAT 75 2.0653944E-4 17.266666 3 GACCCTC 185 1.8189894E-12 17.0 7 GTATTGG 175 7.2759576E-12 16.914286 1 CTAAACA 90 4.4408174E-5 16.444445 4 CTTATCC 105 9.329597E-6 15.857142 3 AGGCTAT 70 0.002590747 15.857142 6 TTGGACC 180 2.0008883E-10 15.416666 4 TGGACCC 230 0.0 15.282607 5 TGCCGAA 230 0.0 15.282607 30 >>END_MODULE