##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088506_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 815206 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.456166907505587 31.0 31.0 34.0 30.0 34.0 2 31.614422612198634 31.0 31.0 34.0 30.0 34.0 3 31.72611462624171 31.0 31.0 34.0 30.0 34.0 4 35.44517827395775 37.0 35.0 37.0 33.0 37.0 5 35.33967733309127 37.0 35.0 37.0 33.0 37.0 6 35.41256443156699 37.0 35.0 37.0 33.0 37.0 7 35.24314958427686 37.0 35.0 37.0 32.0 37.0 8 35.31207326737046 37.0 35.0 37.0 32.0 37.0 9 36.840044111549716 39.0 37.0 39.0 32.0 39.0 10 36.671088044003604 39.0 35.0 39.0 32.0 39.0 11 36.76469015193705 39.0 37.0 39.0 32.0 39.0 12 36.577542363525296 38.0 35.0 39.0 32.0 39.0 13 36.65391569738201 39.0 35.0 39.0 32.0 39.0 14 37.57226271641769 39.0 36.0 41.0 32.0 41.0 15 37.596092276062734 39.0 36.0 41.0 32.0 41.0 16 37.478471699177874 39.0 36.0 41.0 32.0 41.0 17 37.53106454074185 39.0 36.0 41.0 32.0 41.0 18 37.513231011548 39.0 36.0 41.0 32.0 41.0 19 37.59459449513375 39.0 37.0 41.0 32.0 41.0 20 37.493963488983155 39.0 36.0 41.0 32.0 41.0 21 37.342030112634106 39.0 36.0 41.0 31.0 41.0 22 37.223511603202134 39.0 36.0 41.0 31.0 41.0 23 37.03266781647829 39.0 36.0 40.0 31.0 41.0 24 37.1679268798316 39.0 36.0 41.0 31.0 41.0 25 37.10558680873301 39.0 36.0 41.0 31.0 41.0 26 36.86406503386874 39.0 36.0 41.0 30.0 41.0 27 36.80653724334708 39.0 35.0 40.0 30.0 41.0 28 36.65354278550452 39.0 35.0 40.0 30.0 41.0 29 36.41700748031786 39.0 35.0 40.0 30.0 41.0 30 36.2643061999053 38.0 35.0 40.0 30.0 41.0 31 35.977794569716124 38.0 35.0 40.0 29.0 41.0 32 35.80264129557437 38.0 35.0 40.0 29.0 41.0 33 35.61603324803792 38.0 34.0 40.0 27.0 41.0 34 35.38381096311853 38.0 34.0 40.0 27.0 41.0 35 35.178884846284255 38.0 34.0 40.0 26.0 41.0 36 35.1009744776167 38.0 34.0 40.0 25.0 41.0 37 34.93936133934245 38.0 34.0 40.0 25.0 41.0 38 34.78521011866939 38.0 33.0 40.0 24.0 41.0 39 34.631962963962486 38.0 33.0 40.0 24.0 41.0 40 34.44159513055596 38.0 33.0 40.0 23.0 41.0 41 34.28654107060056 38.0 33.0 40.0 22.0 41.0 42 33.96214944443491 38.0 33.0 40.0 20.0 41.0 43 33.55169490901686 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 3.0 15 9.0 16 14.0 17 33.0 18 95.0 19 184.0 20 400.0 21 797.0 22 1417.0 23 2384.0 24 3928.0 25 5986.0 26 8344.0 27 11464.0 28 15348.0 29 19808.0 30 24379.0 31 29241.0 32 35541.0 33 43391.0 34 52564.0 35 65125.0 36 84824.0 37 119277.0 38 155529.0 39 135120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69941339980324 22.624956146053883 15.804103502672945 21.871526951469935 2 18.992868060343028 24.691673024977735 34.97888877167243 21.336570143006796 3 19.73746513151277 24.85948336984762 33.647446166981105 21.7556053316585 4 14.005785040836304 17.19577628231392 35.93214475850276 32.86629391834702 5 11.895152881602932 39.980937333631005 34.47594841058579 13.647961374180268 6 31.510808311028132 38.721623736822345 13.467884191235099 16.29968376091442 7 24.53600684980238 34.84910562483593 21.29903361849643 19.315853906865257 8 27.307821581293563 34.91767724967677 18.834012507268103 18.940488661761567 9 24.428672016643645 14.841034045382395 22.24443882895857 38.48585510901539 10 16.193330274801706 29.104913359322676 32.799684987598226 21.902071378277395 11 32.93719624242216 23.42733002455821 23.373233268646207 20.26224046437342 12 20.96218624494913 28.57437261256664 30.905317183632114 19.558123958852118 13 31.82717006498971 21.851532005407222 26.249438792158053 20.071859137445013 14 19.922081044545795 23.73571833377085 29.063819451770474 27.27838116991288 15 21.92709572795097 31.187209122602138 25.763303999234548 21.122391150212337 16 20.64275778146873 29.22230699970314 27.03868715392183 23.096248064906295 17 21.033088569024272 27.952321253768986 27.847930461748323 23.166659715458422 18 22.11698638135637 26.219630375635116 30.652497650900507 21.010885592108007 19 22.058718900498768 25.651307767607207 32.224247613486654 20.06572571840737 20 22.751304578229306 25.40658434800529 31.564905066940135 20.277206006825267 21 21.672068164365818 25.982267058878367 32.24706393230668 20.098600844449134 22 20.315110536477896 26.607507795575597 31.741056861701217 21.336324806245294 23 21.41740860592292 26.643694967897684 32.17812430232358 19.760772123855812 24 20.918025627878105 26.754219178955996 30.665623167641066 21.662132025524837 25 21.040694008630947 26.93147498914385 31.604281617161796 20.423549385063406 26 20.536158958594513 27.956982652237595 31.47130909242572 20.035549296742172 27 19.452506483023924 27.80732722771913 31.28779719481947 21.45236909443748 28 20.193178166009574 27.561990466213448 31.159118063409743 21.08571330436724 29 20.375463379808295 27.230417833038523 30.393176693989005 22.000942093164184 30 20.456301842724418 27.630930096196543 32.13997443590945 19.772793625169587 31 21.382693454169864 27.473791900452156 31.6107830413417 19.53273160403628 32 20.519721395573633 27.398228177908408 30.923962777506542 21.158087649011414 33 20.29462491689217 27.055860727227227 31.57778524691918 21.071729108961414 34 19.60363392811142 27.423620532724247 32.2673042151309 20.705441324033437 35 19.143504831907517 29.06013940034789 31.32422970390306 20.472126063841532 36 21.318292554274628 27.106277431716645 30.997809142719756 20.577620871288975 37 20.242613523452967 27.829407536254642 31.202665338576995 20.725313601715396 38 19.997276761947287 26.344752124003012 32.36470290944865 21.293268204601045 39 19.359769187174773 26.19620071491132 33.18400502449688 21.260025073417026 40 18.464780681202054 26.47367659217425 33.01361864363118 22.04792408299252 41 19.323950019994946 25.739997006891507 33.208048027124434 21.728004945989113 42 18.682639725419097 27.37038245547751 32.2324663949971 21.714511424106302 43 18.64044180244012 27.26721834726437 31.897091042018825 22.19524880827668 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 524.0 1 402.0 2 280.0 3 517.5 4 755.0 5 755.0 6 1210.5 7 1666.0 8 1841.0 9 2016.0 10 3112.5 11 4209.0 12 4209.0 13 7723.5 14 11238.0 15 19564.5 16 27891.0 17 25557.5 18 23224.0 19 23224.0 20 23418.0 21 23612.0 22 19103.5 23 14595.0 24 15911.0 25 17227.0 26 17227.0 27 18921.0 28 20615.0 29 21717.5 30 22820.0 31 24657.0 32 26494.0 33 26494.0 34 29203.5 35 31913.0 36 34512.5 37 37112.0 38 38986.5 39 40861.0 40 40861.0 41 42109.5 42 43358.0 43 45594.0 44 47830.0 45 51166.0 46 54502.0 47 54502.0 48 69327.0 49 84152.0 50 77264.5 51 70377.0 52 62523.5 53 54670.0 54 54670.0 55 48394.0 56 42118.0 57 36515.0 58 30912.0 59 27446.5 60 23981.0 61 23981.0 62 20747.5 63 17514.0 64 15124.5 65 12735.0 66 10771.5 67 8808.0 68 8808.0 69 7551.0 70 6294.0 71 5318.0 72 4342.0 73 3600.0 74 2858.0 75 2858.0 76 2266.0 77 1674.0 78 1313.0 79 952.0 80 731.0 81 510.0 82 510.0 83 391.5 84 273.0 85 202.5 86 132.0 87 107.0 88 82.0 89 82.0 90 67.0 91 52.0 92 36.0 93 20.0 94 13.0 95 6.0 96 6.0 97 4.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 815206.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.750760717844976 #Duplication Level Percentage of deduplicated Percentage of total 1 84.4087878726295 48.74671710915562 2 8.933959347601668 10.318858970925968 3 2.592322626881209 4.491258111854162 4 1.1068337280845129 2.55681959140196 5 0.6785040031364638 1.9592061165616932 6 0.4511183853369056 1.5631457956207333 7 0.29909610703304856 1.2091119396233176 8 0.21791278814090237 1.0067703428226962 9 0.18190589291111575 0.9454683325208201 >10 1.0081729980649088 10.882141391040173 >50 0.07581355737354468 3.049421455912438 >100 0.037480345488804495 4.279105421409747 >500 0.005110956200462108 2.105486141148883 >1k 0.002342521591878466 2.5832789950252506 >5k 2.1295650835258782E-4 1.2080718670856003 >10k+ 4.2591301670517564E-4 3.0951384178910013 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14855 1.8222387960834439 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 10312 1.2649563423232901 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9823 1.2049715041351512 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4356 0.5343434665593727 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2413 0.29599880275660384 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2002 0.24558209826718644 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1976 0.2423927203676126 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1845 0.2263231624889905 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1676 0.2055922061417605 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1514 0.18571992845980034 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1479 0.18142653513345092 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1399 0.17161306467322368 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1246 0.1528448024180391 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1099 0.1348125504473716 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 921 0.112977578673366 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 910 0.11162822648508475 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 880 0.10794817506249953 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 879 0.10782550668174669 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 816 0.10009739869431776 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 2.4533676150568075E-4 0.0 12 0.0 0.0 0.0 6.133419037642019E-4 0.0 13 0.0 0.0 0.0 7.360102845170424E-4 0.0 14 0.0 0.0 0.0 0.0011040154267755635 0.0 15 0.0 0.0 0.0 0.0011040154267755635 0.0 16 0.0 0.0 0.0 0.0014720205690340847 0.0 17 0.0 0.0 0.0 0.0024533676150568077 0.0 18 0.0 0.0 0.0 0.0025760359958096482 0.0 19 1.2266838075284037E-4 0.0 0.0 0.0036800514225852118 0.0 20 1.2266838075284037E-4 0.0 0.0 0.007237434464417583 0.0 21 2.4533676150568075E-4 0.0 0.0 0.011408159410014156 0.0 22 2.4533676150568075E-4 0.0 0.0 0.021098961489488546 0.0 23 2.4533676150568075E-4 0.0 0.0 0.02526968643508512 0.0 24 2.4533676150568075E-4 0.0 0.0 0.03164844223423282 0.0 25 2.4533676150568075E-4 0.0 0.0 0.03508315689531235 0.0 26 2.4533676150568075E-4 0.0 0.0 0.0434246067865055 0.0 27 2.4533676150568075E-4 0.0 0.0 0.1008334089788348 0.0 28 2.4533676150568075E-4 0.0 0.0 0.24018468951406147 0.0 29 2.4533676150568075E-4 0.0 0.0 0.4445502118482936 0.0 30 2.4533676150568075E-4 0.0 0.0 0.7324529014752099 0.0 31 2.4533676150568075E-4 0.0 0.0 1.1432693086164725 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTAGAC 45 1.3227512E-4 24.666666 3 AGCGCTA 45 1.3227512E-4 24.666666 18 GGTATCA 3110 0.0 24.270098 1 CTCCGTT 40 0.0019307081 23.125 12 GCGCTAT 50 2.701169E-4 22.199999 19 TGGACCC 310 0.0 20.290321 5 GGACCCT 315 0.0 19.380953 6 GTATTGG 240 0.0 18.5 1 TCTAGTA 70 1.21864534E-4 18.5 2 ACTAACT 60 9.233678E-4 18.5 8 GACCGTG 50 0.0070331716 18.499998 7 ATTTGCG 50 0.0070331716 18.499998 24 TTGGACC 415 0.0 17.831326 4 GACCCTC 345 0.0 17.695652 7 TTTTTAC 510 0.0 17.411764 1 ACCCCGC 65 0.0015794013 17.076923 6 CTAATAC 65 0.0015794013 17.076923 3 ATTGGAC 270 0.0 16.444445 3 TAGTACC 90 4.4434062E-5 16.444445 4 ATACCGT 80 3.3810563E-4 16.1875 6 >>END_MODULE