##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088504_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1336675 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48423289131614 31.0 31.0 34.0 30.0 34.0 2 31.65382535021602 31.0 31.0 34.0 30.0 34.0 3 31.777772457777694 31.0 31.0 34.0 30.0 34.0 4 35.49667944713562 37.0 35.0 37.0 33.0 37.0 5 35.376928572764506 37.0 35.0 37.0 33.0 37.0 6 35.42863523294743 37.0 35.0 37.0 33.0 37.0 7 35.28559821946247 37.0 35.0 37.0 32.0 37.0 8 35.33263209082238 37.0 35.0 37.0 32.0 37.0 9 36.89342285895973 39.0 37.0 39.0 33.0 39.0 10 36.716471842444875 39.0 35.0 39.0 32.0 39.0 11 36.795506761179794 39.0 37.0 39.0 32.0 39.0 12 36.63024145734752 39.0 35.0 39.0 32.0 39.0 13 36.699330054052034 39.0 35.0 39.0 32.0 39.0 14 37.68996352890568 39.0 37.0 41.0 32.0 41.0 15 37.70395346662427 39.0 37.0 41.0 32.0 41.0 16 37.59290029363907 39.0 36.0 41.0 32.0 41.0 17 37.603074793798044 39.0 36.0 41.0 32.0 41.0 18 37.559878055623095 39.0 36.0 41.0 32.0 41.0 19 37.62437241663082 39.0 37.0 41.0 32.0 41.0 20 37.518656367479004 39.0 36.0 41.0 32.0 41.0 21 37.37503506835992 39.0 36.0 41.0 31.0 41.0 22 37.25383283146614 39.0 36.0 41.0 31.0 41.0 23 37.07418482428414 39.0 36.0 40.0 31.0 41.0 24 37.231345689864774 39.0 36.0 41.0 31.0 41.0 25 37.177046028391345 39.0 36.0 41.0 31.0 41.0 26 36.95971945312062 39.0 36.0 41.0 31.0 41.0 27 36.90967587483868 39.0 36.0 41.0 31.0 41.0 28 36.76634784072419 39.0 35.0 40.0 30.0 41.0 29 36.55477285054332 39.0 35.0 40.0 30.0 41.0 30 36.44248153066378 39.0 35.0 40.0 30.0 41.0 31 36.20801017450016 38.0 35.0 40.0 30.0 41.0 32 36.043564067555685 38.0 35.0 40.0 29.0 41.0 33 35.866375895412126 38.0 35.0 40.0 29.0 41.0 34 35.68338376942787 38.0 35.0 40.0 27.0 41.0 35 35.49830661903604 38.0 34.0 40.0 27.0 41.0 36 35.466134999158356 38.0 34.0 40.0 26.0 41.0 37 35.336630819009855 38.0 34.0 40.0 26.0 41.0 38 35.21270989582359 38.0 34.0 40.0 25.0 41.0 39 35.098566218415094 38.0 34.0 40.0 25.0 41.0 40 34.9434050909907 38.0 34.0 40.0 24.0 41.0 41 34.82904221295379 38.0 34.0 40.0 24.0 41.0 42 34.5753792058653 38.0 33.0 40.0 23.0 41.0 43 34.202105971907905 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 4.0 15 9.0 16 19.0 17 61.0 18 93.0 19 262.0 20 611.0 21 1164.0 22 2108.0 23 3515.0 24 5717.0 25 8575.0 26 12263.0 27 17223.0 28 23157.0 29 29854.0 30 37778.0 31 46256.0 32 56246.0 33 68198.0 34 84400.0 35 103244.0 36 136495.0 37 190571.0 38 266178.0 39 242672.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.07666411057288 22.83180279424692 15.434193053659268 22.65734004152094 2 18.649484728898198 24.21987394093553 35.49845699216339 21.63218433800288 3 19.291899676435932 24.941515327211178 33.18675070604298 22.57983429030991 4 14.347092599173322 17.56193539940524 36.15905137748518 31.93192062393626 5 12.331194942674921 39.36686180260722 34.93384704584136 13.368096208876503 6 31.55583818055997 39.04277404754335 14.170385471412272 15.23100230048441 7 25.033085828641966 34.37514728711167 21.795425215553518 18.79634166869284 8 26.33392559896759 35.80496380945256 19.456262741504105 18.404847850075747 9 24.60942263452223 15.061327547833242 21.93577346774646 38.39347634989807 10 15.934314623973666 29.17014233078347 33.462734022855216 21.43280902238764 11 33.38657489666523 23.39506611554791 23.273944676155388 19.944414311631473 12 20.537004133390692 28.21276675332448 31.219930050311405 20.030299062973423 13 30.923896983185887 21.892980717077823 26.227467409804177 20.955654889932106 14 20.103690126620158 23.28494211382722 28.645033385078644 27.966334374473973 15 22.192904034264124 31.025267922269812 25.14560383040006 21.636224213066 16 21.255054519610226 29.242411206912678 26.616267978379188 22.886266295097908 17 21.129519142648736 28.211943815811622 27.827482372304413 22.83105466923523 18 22.18190659659229 26.73110516767352 29.8843772794434 21.202610956290798 19 22.258215347784617 26.344174911627732 31.016514859633045 20.38109488095461 20 22.72519498008117 26.152580096134066 30.485720163839375 20.63650475994539 21 22.026221781659714 26.620981165952827 30.744272167879256 20.6085248845082 22 21.085379766959058 27.022574672227726 30.504423289131616 21.387622271681597 23 21.776497652757776 26.93040567078759 30.754222230534722 20.538874445919912 24 21.443282772551292 26.991826734247294 29.73781958965343 21.82707090354798 25 21.575850524622663 27.050404922662572 30.46813922606468 20.905605326650083 26 21.00518076570595 27.94179587409056 30.254549535227337 20.798473824976156 27 20.331793442684273 27.89563656086932 30.172180971440326 21.600389025006077 28 20.86191482596742 27.673967119905736 30.084874782576172 21.379243271550678 29 20.856902388389102 27.47152449174257 29.806347840724186 21.865225279144145 30 21.150092580470197 27.66027643219182 30.771279480801244 20.41835150653674 31 21.73594927712421 27.411150803299233 30.44898722576543 20.403912693811137 32 21.058073204032393 27.422073428469893 29.98859109357174 21.53126227392597 33 20.916677576823087 27.090429610787965 30.477191538706116 21.515701273682833 34 20.435708006807936 27.15955636186807 31.12200048628126 21.282735145042736 35 20.11049806422653 28.298576692165263 30.52537078945892 21.06555445414929 36 21.634653150541457 26.799109731236086 30.305796098528067 21.26044101969439 37 20.7880000748125 27.176389174631083 30.550358164849346 21.48525258570707 38 20.594759384293116 26.173153533955524 31.528381992630965 21.703705089120394 39 20.051994688312416 26.083453345053957 32.291918379561224 21.5726335870724 40 19.23309705051714 26.191332971739577 32.287429629491086 22.288140348252192 41 19.80234537191165 25.660313838442406 32.45246600706978 22.08487478257617 42 19.208708175136067 26.910056670469633 31.79276937176202 22.088465782632277 43 19.144294611629604 26.922026670656667 31.37808367778256 22.555595039931173 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 697.0 1 577.0 2 457.0 3 809.5 4 1162.0 5 1162.0 6 1828.5 7 2495.0 8 2672.5 9 2850.0 10 4197.0 11 5544.0 12 5544.0 13 9979.0 14 14414.0 15 24852.0 16 35290.0 17 32447.0 18 29604.0 19 29604.0 20 31261.0 21 32918.0 22 28177.0 23 23436.0 24 26303.5 25 29171.0 26 29171.0 27 32174.5 28 35178.0 29 37972.0 30 40766.0 31 44453.0 32 48140.0 33 48140.0 34 53125.5 35 58111.0 36 62540.0 37 66969.0 38 70113.5 39 73258.0 40 73258.0 41 76117.5 42 78977.0 43 81008.5 44 83040.0 45 86471.0 46 89902.0 47 89902.0 48 106378.5 49 122855.0 50 114222.5 51 105590.0 52 96283.5 53 86977.0 54 86977.0 55 78556.5 56 70136.0 57 61733.5 58 53331.0 59 48420.0 60 43509.0 61 43509.0 62 37947.0 63 32385.0 64 27923.0 65 23461.0 66 19878.0 67 16295.0 68 16295.0 69 13849.5 70 11404.0 71 9516.5 72 7629.0 73 6188.0 74 4747.0 75 4747.0 76 3751.0 77 2755.0 78 2141.5 79 1528.0 80 1178.0 81 828.0 82 828.0 83 615.5 84 403.0 85 317.0 86 231.0 87 178.5 88 126.0 89 126.0 90 93.0 91 60.0 92 41.0 93 22.0 94 20.5 95 19.0 96 19.0 97 11.0 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1336675.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.61417702684009 #Duplication Level Percentage of deduplicated Percentage of total 1 83.66988948285585 50.71581492929971 2 9.677782318905379 11.732216214107073 3 2.8201974524424056 5.128318428989623 4 1.1913572165897703 2.8885254891430323 5 0.6347681573077875 1.9237974729027656 6 0.38327595047878205 1.3939173787470773 7 0.2685558986198956 1.1394806346383932 8 0.20358258128480053 0.987199249726237 9 0.15984142002729265 0.8719790516780237 >10 0.8878351284041708 10.074622419418734 >50 0.06569004232768874 2.719433824927369 >100 0.031040937839430537 3.3549455497286704 >500 0.003957384266721353 1.6926080230099374 >1k 0.0017313556166905918 1.7795621995684636 >5k 1.2366825833504228E-4 0.39204339948370115 >10k+ 3.7100477500512683E-4 3.2055357346312636 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 18193 1.3610638337666225 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12819 0.9590214524847102 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11751 0.8791217012362765 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5230 0.3912693811135841 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2846 0.21291637832681842 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2312 0.1729665027026016 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2300 0.17206875268857424 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2142 0.1602483775038809 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2004 0.14992425234256643 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1782 0.13331587708306059 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1760 0.13167000205734378 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1645 0.12306656442291507 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1418 0.10608412665756449 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 7.481250116894533E-5 0.0 8 0.0 0.0 0.0 7.481250116894533E-5 0.0 9 0.0 0.0 0.0 1.4962500233789067E-4 0.0 10 0.0 0.0 0.0 2.24437503506836E-4 0.0 11 0.0 0.0 0.0 4.48875007013672E-4 0.0 12 0.0 0.0 0.0 4.48875007013672E-4 0.0 13 0.0 0.0 0.0 5.985000093515627E-4 0.0 14 0.0 0.0 0.0 7.481250116894533E-4 0.0 15 0.0 0.0 0.0 0.00112218751753418 0.0 16 0.0 0.0 0.0 0.001795500028054688 0.0 17 7.481250116894533E-5 0.0 0.0 0.0023940000374062507 0.0 18 7.481250116894533E-5 0.0 0.0 0.002917687545588868 0.0 19 7.481250116894533E-5 0.0 0.0 0.003441375053771485 0.0 20 7.481250116894533E-5 0.0 0.0 0.004862812575981447 0.0 21 7.481250116894533E-5 0.0 0.0 0.007032375109880861 0.0 22 7.481250116894533E-5 0.0 0.0 0.012418875194044925 0.0 23 7.481250116894533E-5 0.0 0.0 0.01458843772794434 0.0 24 7.481250116894533E-5 0.0 0.0 0.018478687788729495 0.0 25 7.481250116894533E-5 0.0 0.0 0.021396375334318363 0.0 26 7.481250116894533E-5 0.0 0.0 0.0280546879383545 0.0 27 7.481250116894533E-5 0.0 0.0 0.07473768866777639 0.0 28 7.481250116894533E-5 0.0 0.0 0.20139525314680082 0.0 29 7.481250116894533E-5 0.0 0.0 0.3734640058353751 0.0 30 7.481250116894533E-5 0.0 0.0 0.6303701348495333 0.0 31 7.481250116894533E-5 0.0 0.0 1.0695195167112423 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3440 0.0 24.89971 1 GACCGTC 40 0.0019313507 23.125002 22 TAGTTCG 60 3.7268706E-5 21.583334 9 GTATTGG 300 0.0 17.883333 1 GTTCTAT 75 2.0675843E-4 17.266666 1 CGTATAC 75 2.0675843E-4 17.266666 3 TATACCG 65 0.001580116 17.076923 5 CAATGCG 80 3.3830805E-4 16.1875 19 CGAACAC 105 9.3452945E-6 15.857142 32 TAGTACT 195 4.1836756E-11 15.179486 4 GTATCAA 5725 0.0 15.058516 2 CCGTCGG 75 0.004104872 14.8 24 TAGGAAC 275 0.0 14.799999 30 GTCTAGA 90 8.275258E-4 14.388888 1 ATGCGAC 90 8.275258E-4 14.388888 21 GTACTAG 145 8.9123023E-7 14.034483 1 ATCGTCA 120 3.3011485E-5 13.875001 10 CGTTTAT 120 3.3011485E-5 13.875001 1 TATACTG 215 1.9645086E-10 13.767442 5 ATCAACG 9220 0.0 13.764643 2 >>END_MODULE