##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088503_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2930717 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.648836445142948 31.0 31.0 34.0 30.0 34.0 2 31.801466671807617 31.0 31.0 34.0 30.0 34.0 3 31.92187952640941 31.0 31.0 34.0 30.0 34.0 4 35.60304219069941 37.0 35.0 37.0 33.0 37.0 5 35.51853249563162 37.0 35.0 37.0 33.0 37.0 6 35.56972065197697 37.0 35.0 37.0 33.0 37.0 7 35.42258737366999 37.0 35.0 37.0 33.0 37.0 8 35.46669910469008 37.0 35.0 37.0 33.0 37.0 9 37.0444846772991 39.0 37.0 39.0 33.0 39.0 10 36.894647282559184 39.0 37.0 39.0 33.0 39.0 11 36.96424765680207 39.0 37.0 39.0 33.0 39.0 12 36.805815778186705 39.0 37.0 39.0 32.0 39.0 13 36.87374386540905 39.0 37.0 39.0 33.0 39.0 14 37.86501494344217 40.0 37.0 41.0 33.0 41.0 15 37.87354971496736 40.0 37.0 41.0 33.0 41.0 16 37.762713697706054 40.0 37.0 41.0 32.0 41.0 17 37.814889666931336 40.0 37.0 41.0 32.0 41.0 18 37.783213800581905 40.0 37.0 41.0 32.0 41.0 19 37.85529411403421 40.0 37.0 41.0 32.0 41.0 20 37.75837585137016 40.0 37.0 41.0 32.0 41.0 21 37.62862739732291 40.0 37.0 41.0 32.0 41.0 22 37.508518222673835 39.0 36.0 41.0 32.0 41.0 23 37.346950933849975 39.0 36.0 41.0 31.0 41.0 24 37.496403098627404 39.0 36.0 41.0 32.0 41.0 25 37.44152028326174 39.0 36.0 41.0 32.0 41.0 26 37.23979387979119 39.0 36.0 41.0 31.0 41.0 27 37.192202795425146 39.0 36.0 41.0 31.0 41.0 28 37.04810290451108 39.0 36.0 41.0 31.0 41.0 29 36.83052952570992 39.0 35.0 41.0 30.0 41.0 30 36.6938660402898 39.0 35.0 40.0 30.0 41.0 31 36.42573745605598 38.0 35.0 40.0 30.0 41.0 32 36.269099336442245 38.0 35.0 40.0 30.0 41.0 33 36.08611271576205 38.0 35.0 40.0 30.0 41.0 34 35.90540983656901 38.0 35.0 40.0 29.0 41.0 35 35.69703284213385 38.0 35.0 40.0 28.0 41.0 36 35.61687600679288 38.0 35.0 40.0 27.0 41.0 37 35.46773264016962 38.0 35.0 40.0 26.0 41.0 38 35.323430409691554 38.0 34.0 40.0 25.0 41.0 39 35.18125530373625 38.0 34.0 40.0 25.0 41.0 40 34.98112407305106 38.0 34.0 40.0 24.0 41.0 41 34.83211275602523 38.0 34.0 40.0 24.0 41.0 42 34.53827339862566 38.0 33.0 40.0 22.0 41.0 43 34.14102897004385 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 2.0 14 6.0 15 20.0 16 47.0 17 94.0 18 218.0 19 446.0 20 1091.0 21 2202.0 22 3992.0 23 6772.0 24 11089.0 25 16712.0 26 24768.0 27 34934.0 28 47216.0 29 62235.0 30 78055.0 31 96149.0 32 116821.0 33 143176.0 34 176981.0 35 219714.0 36 288747.0 37 420974.0 38 555131.0 39 623124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.9732157693834 21.51152772512665 15.010422364220085 22.504834141269868 2 18.539865841703584 24.23512744492218 35.33466383823481 21.890342875139428 3 19.111807793110014 24.542833716117933 33.94206946627737 22.40328902449469 4 13.357243295753223 16.611566384608274 36.23127036830919 33.799919951329315 5 12.048860398325733 39.160212330293234 34.89347487321362 13.897452398167411 6 31.725956480956707 38.316255032471574 13.580158029587983 16.377630456983734 7 25.111772989340153 34.466480386881436 21.14103818280646 19.280708440971953 8 27.46112981908523 34.3485911468081 18.96607553714671 19.22420349695996 9 24.572178071100005 14.505938307929425 21.974656713698387 38.94722690727218 10 16.147516119775467 28.77128702634884 32.950571481313276 22.130625372562417 11 33.247802500207285 22.960695283782094 23.344867484646247 20.446634731364373 12 21.503099753405053 28.117692701137642 30.70129255059427 19.677914994863034 13 32.15315569534691 21.473209456934942 25.94030744012472 20.43332740759343 14 20.403573596495328 23.259222913710197 28.864438292745426 27.47276519704905 15 22.223264818813963 30.72104880819267 25.44994961983706 21.60573675315631 16 21.196041787726347 28.691954903868233 26.77508609667873 23.33691721172669 17 21.384869299901695 27.51040103838071 27.39449083620152 23.71023882551608 18 22.6029330024018 25.698762453010644 30.426956952854884 21.271347591732674 19 22.33651355623897 25.06410547316578 31.94539083780522 20.65399013279003 20 23.160305140346203 24.868658420447964 31.233005438600863 20.73803100060497 21 22.150415751503814 25.458855290360688 31.949826612395533 20.440902345739968 22 20.662929924656662 26.08658563757606 31.52655135245061 21.723933085316666 23 21.92303112173574 26.088223462040176 31.863192522512406 20.125552893711678 24 21.337713603872363 26.115520536442105 30.353869036143717 22.192896823541815 25 21.373779863425913 26.346624392597445 31.39354635742721 20.886049386549434 26 20.85626145410833 27.370878866843846 31.220141692288948 20.55271798675887 27 19.719918368099002 27.327305911829768 31.042096524502366 21.910679195568868 28 20.61266918641411 27.044883555798805 30.752372201068884 21.590075056718202 29 20.60888171734084 26.908671154533177 30.09151002979817 22.390937098327814 30 20.802145004106503 27.342319302750827 31.758508242181012 20.097027450961658 31 21.80974826296773 27.09401828972228 31.25808462570763 19.83814882160236 32 20.947160711866754 27.037786316454298 30.513966377511032 21.501086594167912 33 20.604650670808542 26.827087023414407 31.187043989576612 21.38121831620044 34 19.92601127983357 27.258892619109933 31.90157903339012 20.913517067666376 35 19.349531189807816 29.353055924539966 30.856237569168226 20.441175316483985 36 21.67124973172094 27.32467856841858 30.41661818592515 20.587453513935326 37 20.724348342061006 28.311877264164366 30.33227022602319 20.63150416775144 38 20.36552829904764 26.84343114671256 31.564528407212293 21.226512147027503 39 20.035028970726277 26.480925998654936 32.359009757680454 21.125035272938327 40 18.91444994518406 26.673882193333576 32.30223184292444 22.109436018557915 41 19.990705346166145 25.920141726410296 32.525453668846225 21.563699258577337 42 19.25122760061787 27.502962585606184 31.70473300560921 21.54107680816674 43 19.061205841437438 27.49726432132478 31.20942759058619 22.232102246651586 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1529.0 1 1276.5 2 1024.0 3 2035.5 4 3047.0 5 3047.0 6 4571.5 7 6096.0 8 6563.5 9 7031.0 10 10612.0 11 14193.0 12 14193.0 13 25898.0 14 37603.0 15 65708.0 16 93813.0 17 86257.0 18 78701.0 19 78701.0 20 80025.5 21 81350.0 22 65007.5 23 48665.0 24 53731.5 25 58798.0 26 58798.0 27 65172.0 28 71546.0 29 75912.0 30 80278.0 31 86805.0 32 93332.0 33 93332.0 34 102509.5 35 111687.0 36 121604.0 37 131521.0 38 137974.0 39 144427.0 40 144427.0 41 148527.0 42 152627.0 43 159499.0 44 166371.0 45 177113.5 46 187856.0 47 187856.0 48 243379.0 49 298902.0 50 276477.5 51 254053.0 52 228536.0 53 203019.0 54 203019.0 55 181590.5 56 160162.0 57 139560.0 58 118958.0 59 106198.5 60 93439.0 61 93439.0 62 82389.0 63 71339.0 64 61825.5 65 52312.0 66 44583.5 67 36855.0 68 36855.0 69 31497.0 70 26139.0 71 22038.0 72 17937.0 73 14555.5 74 11174.0 75 11174.0 76 8887.5 77 6601.0 78 5212.0 79 3823.0 80 3047.0 81 2271.0 82 2271.0 83 1713.5 84 1156.0 85 852.0 86 548.0 87 416.0 88 284.0 89 284.0 90 222.0 91 160.0 92 105.0 93 50.0 94 40.0 95 30.0 96 30.0 97 18.5 98 7.0 99 5.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2930717.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.46644309670268 #Duplication Level Percentage of deduplicated Percentage of total 1 76.36898023999179 36.24963854914781 2 12.745522512172238 12.099692381235332 3 4.5409111810050415 6.466227065410704 4 2.06213702720002 3.915292394367735 5 1.1157314121836728 2.647990079381002 6 0.6723571861203502 1.914864246938444 7 0.4140279771065961 1.3756704791041219 8 0.3255449187862977 1.2361967490392398 9 0.23855436713434924 1.019099456374726 >10 1.3383487734020079 11.791080440089676 >50 0.10809892046629681 3.554081429769798 >100 0.05998829468438155 5.3360558525312 >500 0.004466365914115397 1.4913350303446953 >1k 0.004538404074002323 4.361814733921109 >5k 5.042671193335914E-4 1.7649892296297918 >10k+ 2.881526396191951E-4 4.7759718827146465 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 51483 1.756669101793179 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37242 1.270747056095829 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 36272 1.2376493533834894 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14676 0.500764829903399 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9328 0.3182838875264995 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8322 0.283957816466073 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7660 0.2613694873984762 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7451 0.25423812671097207 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6687 0.2281694206571293 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6421 0.2190931434184877 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5748 0.19612947957786442 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4887 0.16675100325278763 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4610 0.1572993912411195 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 4067 0.13877150199080976 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3981 0.1358370664926023 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 3542 0.12085779691454344 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3322 0.11335110145401278 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3145 0.10731162374258585 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3116 0.10632210479551592 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 3112 0.10618561942350627 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 3106 0.1059808913654918 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3005 0.10253463572224818 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 3.412134300241204E-5 0.0 12 0.0 0.0 0.0 1.3648537200964815E-4 0.0 13 0.0 0.0 0.0 1.7060671501206018E-4 0.0 14 0.0 0.0 0.0 3.753347730265324E-4 0.0 15 0.0 0.0 0.0 6.483055170458287E-4 0.0 16 0.0 0.0 0.0 7.847908890554769E-4 0.0 17 0.0 0.0 0.0 8.87154918062713E-4 0.0 18 0.0 0.0 0.0 0.0011601256620820094 0.0 19 0.0 0.0 0.0 0.0016719458071181898 0.0 20 0.0 0.0 0.0 0.0029685568412098472 0.0 21 0.0 0.0 0.0 0.005425293537383514 0.0 22 0.0 0.0 0.0 0.008462093064598185 0.0 23 0.0 0.0 0.0 0.010338766929730847 0.0 24 0.0 0.0 0.0 0.012863746311909337 0.0 25 0.0 0.0 0.0 0.01508163360706612 0.0 26 0.0 0.0 0.0 0.01992686431340863 0.0 27 0.0 0.0 0.0 0.060019442341242776 0.0 28 0.0 0.0 0.0 0.15869836630421838 0.0 29 0.0 0.0 0.0 0.3144622971102293 0.0 30 0.0 0.0 0.0 0.5272771134162733 0.0 31 0.0 0.0 0.0 0.7852003451715058 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10915 0.0 23.898306 1 GTATTGG 775 0.0 19.096775 1 ATTGGAC 710 0.0 17.71831 3 TATACCG 160 3.45608E-11 17.34375 5 ACGTTTA 110 7.817762E-7 16.818182 26 CTAGTAC 360 0.0 16.444445 3 TTAACGG 150 4.6802597E-9 16.033333 35 TTGGACC 1210 0.0 15.595041 4 GGACCCT 1200 0.0 15.416667 6 GACCCTC 1150 0.0 14.960869 7 TGATACT 1410 0.0 14.8262415 35 CGTATAC 125 2.9623516E-6 14.799999 3 TTTTTAC 1920 0.0 14.549479 1 TGGACCC 1290 0.0 14.484496 5 TTATACG 90 8.279408E-4 14.388889 4 GTATCAA 18140 0.0 14.379824 2 GTATTAG 465 0.0 14.32258 1 GATACTG 1455 0.0 14.240551 36 CCGTATA 130 4.449337E-6 14.230769 2 CGGTATA 195 6.7484507E-10 14.230768 26 >>END_MODULE