##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088500_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 564540 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.37341729549722 31.0 31.0 34.0 30.0 34.0 2 31.510936337549154 31.0 31.0 34.0 30.0 34.0 3 31.662838771389097 31.0 31.0 34.0 30.0 34.0 4 35.37062741346937 37.0 35.0 37.0 33.0 37.0 5 35.2540847415595 37.0 35.0 37.0 33.0 37.0 6 35.33592128104297 37.0 35.0 37.0 33.0 37.0 7 35.15795160661778 37.0 35.0 37.0 32.0 37.0 8 35.21298579374358 37.0 35.0 37.0 32.0 37.0 9 36.74985297764552 39.0 35.0 39.0 32.0 39.0 10 36.62274240974953 39.0 35.0 39.0 32.0 39.0 11 36.65313706734687 39.0 35.0 39.0 32.0 39.0 12 36.493881744429096 38.0 35.0 39.0 32.0 39.0 13 36.504573635172 38.0 35.0 39.0 32.0 39.0 14 37.410314592411524 39.0 36.0 41.0 32.0 41.0 15 37.45987352534807 39.0 36.0 41.0 32.0 41.0 16 37.31819534488256 39.0 36.0 41.0 32.0 41.0 17 37.41916250398555 39.0 36.0 41.0 32.0 41.0 18 37.29042051936089 39.0 36.0 40.0 32.0 41.0 19 37.38828603819039 39.0 36.0 41.0 32.0 41.0 20 37.30413079675488 39.0 36.0 41.0 31.0 41.0 21 37.13370531760371 39.0 36.0 40.0 31.0 41.0 22 37.04935876997201 39.0 36.0 40.0 31.0 41.0 23 36.8145746979842 39.0 35.0 40.0 30.0 41.0 24 37.01709710560811 39.0 36.0 40.0 31.0 41.0 25 36.978315088390545 39.0 36.0 41.0 31.0 41.0 26 36.77697063095618 39.0 35.0 40.0 30.0 41.0 27 36.716427533921426 39.0 35.0 40.0 30.0 41.0 28 36.525790909412976 39.0 35.0 40.0 30.0 41.0 29 36.33529776455167 38.0 35.0 40.0 30.0 41.0 30 36.11668083749601 38.0 35.0 40.0 30.0 41.0 31 35.81800403868636 38.0 35.0 40.0 28.0 41.0 32 35.677379813653594 38.0 34.0 40.0 28.0 41.0 33 35.45524852091969 38.0 34.0 40.0 27.0 41.0 34 35.32852233676976 38.0 34.0 40.0 27.0 41.0 35 35.06474651929004 38.0 33.0 40.0 25.0 41.0 36 34.903891664009635 38.0 33.0 40.0 25.0 41.0 37 34.70628122010841 38.0 33.0 40.0 24.0 41.0 38 34.59417756049173 38.0 33.0 40.0 24.0 41.0 39 34.455678959861125 38.0 33.0 40.0 23.0 41.0 40 34.29697275658058 38.0 33.0 40.0 22.0 41.0 41 34.0570287313565 38.0 33.0 40.0 21.0 41.0 42 33.77469621284585 37.0 33.0 40.0 19.0 41.0 43 33.43375314415276 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 2.0 15 1.0 16 5.0 17 20.0 18 46.0 19 133.0 20 287.0 21 519.0 22 1019.0 23 1695.0 24 2867.0 25 4110.0 26 5983.0 27 8344.0 28 11026.0 29 14333.0 30 17921.0 31 21883.0 32 26622.0 33 32520.0 34 39134.0 35 46989.0 36 59970.0 37 79347.0 38 96344.0 39 93418.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.47837177170794 21.438870584900982 14.199879547950545 22.882878095440535 2 18.986431430899493 24.16994367095334 34.62500442838417 22.218620469762993 3 19.863782902894393 24.648740567541715 33.10961136500514 22.377865164558756 4 13.787154143196231 16.36093102348815 36.101959117157335 33.74995571615828 5 12.15343465476317 39.10582066815461 34.91975767881815 13.820986998264074 6 32.19594714280653 37.32330747156977 13.148581145711551 17.33216423991214 7 25.637510185283595 33.56183795656641 21.175293159032133 19.625358699117864 8 27.694937471215503 34.12193998653771 18.696106564636693 19.48701597761009 9 24.490912955680734 14.423601516278739 21.91518758635349 39.17029794168704 10 16.515747334112728 27.739221312927338 33.09172069295355 22.653310660006376 11 33.00191306196195 22.48574060296879 23.624721011797213 20.887625323272044 12 21.195309455485884 27.53055585078117 30.862117830446028 20.412016863286926 13 31.993481418500018 21.006837425160306 26.271300527863396 20.72838062847628 14 20.3400999043469 23.36557197009955 27.807064158429874 28.487263967123678 15 22.26573847734439 29.987069118220145 25.87859141956283 21.86860098487264 16 21.55259149041698 28.700003542707336 26.61972579445212 23.127679172423566 17 21.63921068480533 26.881177595918803 26.85195026038899 24.62766145888688 18 23.203670244801078 25.481453927091085 29.60321677826195 21.711659049845892 19 22.716016579870338 24.730754242392035 30.820845289970595 21.732383887767032 20 23.85127714599497 24.283841711836185 30.73511177241648 21.129769369752367 21 22.666772947886777 25.16207886066532 31.36217097105608 20.80897722039182 22 21.05785241081234 25.603500194848905 30.928366457646934 22.41028093669182 23 22.18921599886633 25.9308463527828 31.91270769121763 19.96722995713324 24 22.09462571296985 26.00790023736139 29.206787827257592 22.690686222411166 25 21.84132213837815 26.34817727707514 30.511744074821976 21.298756509724733 26 21.80731214794346 27.201969745279342 30.220533531724946 20.770184575052255 27 20.40085733517554 27.27742941155631 29.905941120204062 22.415772133064088 28 21.07290891699437 26.74832607078329 29.96067594855989 22.21808906366245 29 21.4475502178765 26.544974669642542 29.3228114925426 22.684663619938355 30 21.411768873773337 26.6944769192617 31.320367024480106 20.573387182484854 31 22.156268820632725 26.503524993800266 31.066177773054164 20.27402841251284 32 21.660821199560704 26.458709745987885 29.84943493817976 22.031034116271655 33 21.239239026464023 26.381301590675594 30.622099408367877 21.75735997449251 34 20.276154036915013 27.217911928295603 31.137740461260492 21.36819357352889 35 19.84128671130478 29.48914160201226 29.97803521451093 20.691536472172032 36 22.529315903213234 26.795798349098384 29.70577815566656 20.969107592021825 37 21.32142983668119 27.717433662805114 29.560172884118042 21.40096361639565 38 21.130655046586604 25.966627696885958 31.231090799589044 21.67162645693839 39 20.551599532362633 25.792149360541327 31.8912743118291 21.764976795266943 40 19.39171715024622 26.49697098522691 31.45711552768626 22.654196336840613 41 21.011620080065185 25.31317532858611 31.493959683990507 22.181244907358202 42 19.724731639919227 27.36351719984412 30.954759627307187 21.956991532929464 43 20.0699684699047 27.230311403974916 29.97148120593758 22.728238920182804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 29.0 1 64.5 2 100.0 3 266.5 4 433.0 5 433.0 6 717.0 7 1001.0 8 1116.0 9 1231.0 10 1916.0 11 2601.0 12 2601.0 13 4989.0 14 7377.0 15 11778.5 16 16180.0 17 14768.0 18 13356.0 19 13356.0 20 13990.5 21 14625.0 22 11457.5 23 8290.0 24 9245.5 25 10201.0 26 10201.0 27 11004.5 28 11808.0 29 12601.5 30 13395.0 31 14954.5 32 16514.0 33 16514.0 34 18061.0 35 19608.0 36 21441.5 37 23275.0 38 24770.0 39 26265.0 40 26265.0 41 27414.5 42 28564.0 43 29996.0 44 31428.0 45 34331.5 46 37235.0 47 37235.0 48 49924.0 49 62613.0 50 58374.0 51 54135.0 52 49277.5 53 44420.0 54 44420.0 55 38763.0 56 33106.0 57 28183.5 58 23261.0 59 20482.0 60 17703.0 61 17703.0 62 15640.0 63 13577.0 64 11711.0 65 9845.0 66 8669.5 67 7494.0 68 7494.0 69 6435.5 70 5377.0 71 4545.5 72 3714.0 73 3061.5 74 2409.0 75 2409.0 76 1978.5 77 1548.0 78 1193.5 79 839.0 80 659.0 81 479.0 82 479.0 83 366.5 84 254.0 85 186.0 86 118.0 87 97.5 88 77.0 89 77.0 90 54.0 91 31.0 92 24.0 93 17.0 94 11.0 95 5.0 96 5.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 564540.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.669186924288155 #Duplication Level Percentage of deduplicated Percentage of total 1 87.35863982022032 52.99977648704509 2 7.1712806184537525 8.701515286549908 3 2.0105561958833147 3.6593642900949153 4 0.8984322055565673 2.1802860567084745 5 0.5679440886560099 1.7228353038607973 6 0.35734973112074325 1.300807058082509 7 0.26914737470960365 1.143026667050686 8 0.19143412634627688 0.9291322235992053 9 0.1490350281730907 0.8137650584249811 >10 0.9067204761556101 10.440851834006354 >50 0.06985641320675269 2.9410497468790058 >100 0.04138552031968267 4.963778090568473 >500 0.004989743584642529 2.0483709193115254 >1k 0.002348114628067073 2.5729732602914224 >5k 8.805429855251523E-4 3.582467717526668 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 7948 1.4078718957026959 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 6615 1.1717504516951855 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 5555 0.9839869628370002 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3006 0.5324689127431184 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2001 0.3544478690615368 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1895 0.3356715201757183 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1726 0.30573564317851704 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1669 0.2956389272682184 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1665 0.294930385800829 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1476 0.26145180146668084 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1011 0.17908385588266554 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 913 0.16172458993162575 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 902 0.15977610089630495 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 885 0.1567647996599001 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 850 0.15056506182024304 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 747 0.13232011903496652 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 696 0.12328621532575194 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 687 0.12169199702412584 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 669 0.11850356042087364 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 631 0.11177241648067454 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 628 0.11124101038013251 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 591 0.10468700180678073 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 579 0.10256137740461262 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 578 0.10238424203776526 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 573 0.10149856520352853 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.7713536684734474E-4 0.0 10 0.0 0.0 0.0 1.7713536684734474E-4 0.0 11 3.542707336946895E-4 0.0 0.0 3.542707336946895E-4 0.0 12 3.542707336946895E-4 0.0 0.0 0.0010628122010840685 0.0 13 3.542707336946895E-4 0.0 0.0 0.0010628122010840685 0.0 14 3.542707336946895E-4 0.0 0.0 0.0012399475679314132 0.0 15 3.542707336946895E-4 0.0 0.0 0.0019484890353207922 0.0 16 3.542707336946895E-4 0.0 0.0 0.003542707336946895 0.0 17 3.542707336946895E-4 0.0 0.0 0.004959790271725653 0.0 18 3.542707336946895E-4 0.0 0.0 0.0061997378396570655 0.0 19 3.542707336946895E-4 0.0 0.0 0.007971091508130513 0.0 20 3.542707336946895E-4 0.0 0.0 0.012930881779856166 0.0 21 3.542707336946895E-4 0.0 0.0 0.02090197328798668 0.0 22 3.542707336946895E-4 0.0 0.0 0.031707230665674706 0.0 23 3.542707336946895E-4 0.0 0.0 0.03772983313848443 0.0 24 3.542707336946895E-4 0.0 0.0 0.044283841711836185 1.7713536684734474E-4 25 3.542707336946895E-4 0.0 0.0 0.04924363198356184 1.7713536684734474E-4 26 3.542707336946895E-4 0.0 0.0 0.06022602472809721 1.7713536684734474E-4 27 3.542707336946895E-4 0.0 0.0 0.11832642505402628 1.7713536684734474E-4 28 3.542707336946895E-4 0.0 0.0 0.2324016013037163 1.7713536684734474E-4 29 3.542707336946895E-4 0.0 0.0 0.37995536188755447 1.7713536684734474E-4 30 3.542707336946895E-4 0.0 0.0 0.6019059765472774 1.7713536684734474E-4 31 3.542707336946895E-4 0.0 0.0 0.802068941084777 3.542707336946895E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGCCG 35 8.8637834E-4 26.42857 5 TATCGCC 35 8.8637834E-4 26.42857 33 GGTATCA 2125 0.0 23.941177 1 ACTGAGC 80 2.719571E-8 23.125 8 TCTATCG 40 0.0019299765 23.125 31 CTAGCCT 50 2.699743E-4 22.199999 4 ACGGTGC 60 3.7219645E-5 21.583332 8 TTTGGAC 125 4.110916E-10 19.24 3 CGAACTA 60 9.2288817E-4 18.5 24 TTGGACC 330 0.0 18.5 4 TATGCTC 70 1.2178034E-4 18.5 5 TCGCCTA 50 0.007030557 18.499998 35 CCCTAGA 50 0.007030557 18.499998 2 CGGAGTG 50 0.007030557 18.499998 25 GTACGGA 50 0.007030557 18.499998 1 TAATACT 95 3.5998128E-6 17.526316 4 TACACAG 95 3.5998128E-6 17.526316 5 TACACTA 85 2.7191432E-5 17.411764 5 ATTGGAC 235 0.0 17.319147 3 GACCGGA 65 0.0015785878 17.076923 22 >>END_MODULE