##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088499_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1758530 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.273581912165273 31.0 31.0 33.0 30.0 34.0 2 31.413471479019407 31.0 31.0 34.0 30.0 34.0 3 31.561511034784736 31.0 31.0 34.0 30.0 34.0 4 35.28982843625073 37.0 35.0 37.0 33.0 37.0 5 35.14820219160321 37.0 35.0 37.0 32.0 37.0 6 35.22713743865615 37.0 35.0 37.0 32.0 37.0 7 35.057120435818554 37.0 35.0 37.0 32.0 37.0 8 35.1014233479099 37.0 35.0 37.0 32.0 37.0 9 36.63296503329485 39.0 35.0 39.0 32.0 39.0 10 36.46584419941656 38.0 35.0 39.0 32.0 39.0 11 36.508173872495775 38.0 35.0 39.0 32.0 39.0 12 36.34124979386192 38.0 35.0 39.0 32.0 39.0 13 36.366295712896566 38.0 35.0 39.0 32.0 39.0 14 37.2897397257937 39.0 36.0 40.0 32.0 41.0 15 37.31305806554338 39.0 36.0 40.0 32.0 41.0 16 37.17787583947957 39.0 36.0 40.0 31.0 41.0 17 37.24565005999329 39.0 36.0 40.0 32.0 41.0 18 37.11277487446902 39.0 36.0 40.0 31.0 41.0 19 37.20568770507185 39.0 36.0 40.0 31.0 41.0 20 37.108044787407664 39.0 36.0 40.0 31.0 41.0 21 36.94061801618397 39.0 36.0 40.0 31.0 41.0 22 36.8427442238688 39.0 36.0 40.0 30.0 41.0 23 36.643660898591435 39.0 35.0 40.0 30.0 41.0 24 36.84981433356269 39.0 36.0 40.0 30.0 41.0 25 36.79937788948724 39.0 35.0 40.0 30.0 41.0 26 36.59969235668428 39.0 35.0 40.0 30.0 41.0 27 36.544153355359306 39.0 35.0 40.0 30.0 41.0 28 36.353532780219844 38.0 35.0 40.0 30.0 41.0 29 36.18476966557295 38.0 35.0 40.0 29.0 41.0 30 36.000445258255475 38.0 35.0 40.0 29.0 41.0 31 35.735629758946395 38.0 34.0 40.0 27.0 41.0 32 35.599520053681196 38.0 34.0 40.0 27.0 41.0 33 35.40952158905449 38.0 34.0 40.0 27.0 41.0 34 35.288343104752265 38.0 34.0 40.0 26.0 41.0 35 35.03661865307956 38.0 33.0 40.0 25.0 41.0 36 34.88732634643708 38.0 33.0 40.0 25.0 41.0 37 34.72857443432867 38.0 33.0 40.0 24.0 41.0 38 34.6430689268878 38.0 33.0 40.0 24.0 41.0 39 34.55005032612466 38.0 33.0 40.0 24.0 41.0 40 34.428803034352555 38.0 33.0 40.0 23.0 41.0 41 34.22631800424218 38.0 33.0 40.0 22.0 41.0 42 33.99557869356792 38.0 33.0 40.0 21.0 41.0 43 33.662686448340374 37.0 32.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 1.0 12 2.0 13 1.0 14 4.0 15 13.0 16 30.0 17 71.0 18 202.0 19 439.0 20 898.0 21 1924.0 22 3489.0 23 5785.0 24 9112.0 25 13715.0 26 19550.0 27 27234.0 28 35817.0 29 45866.0 30 57552.0 31 69951.0 32 84774.0 33 102536.0 34 122964.0 35 148795.0 36 185242.0 37 241333.0 38 309061.0 39 272166.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.076581008001 21.703525103353368 13.700932028455584 23.518961860190046 2 19.356223664083068 23.87266637475619 34.2745929839127 22.496516977248042 3 19.647262201952767 24.958573353880798 32.500952500099515 22.89321194406692 4 14.078406396251413 16.740061301200434 36.271999909014916 32.90953239353323 5 12.385344577573314 39.01679243459025 35.06235321546974 13.535509772366694 6 32.31295457001018 37.9647773993051 13.556720670105143 16.165547360579573 7 26.255451996838268 32.884966420817385 21.504495231812935 19.35508635053141 8 27.166895077138292 34.41982792445963 18.90306107942429 19.51021591897778 9 24.824825280205626 14.199985214923828 21.266682968160907 39.708506536709635 10 16.256873638777844 27.74823289906911 33.639460230988384 22.355433231164664 11 33.7466520332323 22.4304959255742 23.21927973932773 20.603572301865764 12 21.116330116631506 27.427851671566593 30.63837409654655 20.817444115255356 13 31.240467890795152 21.111610265392116 25.945647785366187 21.702274058446545 14 20.69819678936384 22.814339249259323 27.415227491143167 29.07223647023366 15 22.878426867895342 29.705037730377075 25.236703382939158 22.17983201878842 16 22.163340972289355 28.377849681267875 26.114652579142806 23.34415676729996 17 22.043070064201352 26.954331174333106 26.71708756745691 24.28551119400863 18 22.935121948445577 25.907320318675257 29.124780356320336 22.03277737655883 19 23.090365248247117 24.993375148561583 29.90537551250192 22.010884090689384 20 23.742045913348083 24.92371469352243 29.794885500958184 21.539353892171302 21 22.780617902452615 25.653017008524166 30.086890755346797 21.479474333676425 22 21.666221218858933 26.113572131268732 29.730342956901502 22.489863692970832 23 22.58517056859991 26.266199609901452 30.516852143551716 20.63177767794692 24 22.59660056979409 26.41052469960706 28.107169055972886 22.885705674625967 25 22.448920405111085 26.307086032083614 29.414397252250456 21.829596310554837 26 22.238858592119552 27.140281940029453 29.236692009803644 21.384167458047347 27 21.28772326886661 27.097973875907716 28.8696240610055 22.74467879422017 28 21.66690360698993 26.63013994643253 29.25682245966802 22.446133986909523 29 22.233911278169835 26.67415398088176 28.581826866758032 22.510107874190375 30 22.04016991464462 26.694682490489214 30.11805314666227 21.147094448203898 31 22.500781903066766 26.622974871057075 29.899347750678125 20.976895475198035 32 21.997861850522877 26.362075142306356 29.07627393334205 22.563789073828712 33 21.788311828629595 26.415415147879195 29.681381608502555 22.114891414988655 34 21.21277430581224 26.84696877505644 30.188168527122084 21.752088392009234 35 20.776842021461107 28.72342240393965 29.0012681046101 21.498467469989137 36 22.916071946455276 26.589424121283116 28.863653164859286 21.63085076740232 37 21.72968331504154 27.23445150210687 28.96737616077064 22.068489022080943 38 21.630225244948907 25.866377030815514 30.263060624498873 22.240337099736713 39 21.176550869191882 25.869334046049826 30.898136511745605 22.055978573012684 40 20.24708136909805 26.409159923345065 30.4958687085236 22.84788999903328 41 21.425281342939844 25.22186144109 30.685629474618004 22.667227741352153 42 20.25879569868015 27.01711088238472 30.20465957362115 22.519433845313984 43 20.711730820628592 26.503670679487985 29.59790279381074 23.186695706072687 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 133.0 1 224.5 2 316.0 3 642.0 4 968.0 5 968.0 6 1628.0 7 2288.0 8 2616.5 9 2945.0 10 4587.0 11 6229.0 12 6229.0 13 12128.5 14 18028.0 15 28565.5 16 39103.0 17 35822.5 18 32542.0 19 32542.0 20 34774.0 21 37006.0 22 30037.5 23 23069.0 24 25908.0 25 28747.0 26 28747.0 27 32268.5 28 35790.0 29 39403.0 30 43016.0 31 48533.0 32 54050.0 33 54050.0 34 61268.5 35 68487.0 36 74656.5 37 80826.0 38 86483.0 39 92140.0 40 92140.0 41 95393.5 42 98647.0 43 104891.5 44 111136.0 45 115069.5 46 119003.0 47 119003.0 48 147137.5 49 175272.0 50 166524.5 51 157777.0 52 145609.0 53 133441.0 54 133441.0 55 119672.5 56 105904.0 57 91482.0 58 77060.0 59 68884.0 60 60708.0 61 60708.0 62 53774.0 63 46840.0 64 40715.5 65 34591.0 66 29582.5 67 24574.0 68 24574.0 69 21040.0 70 17506.0 71 14671.0 72 11836.0 73 9783.0 74 7730.0 75 7730.0 76 6188.5 77 4647.0 78 3706.5 79 2766.0 80 2168.5 81 1571.0 82 1571.0 83 1218.0 84 865.0 85 675.0 86 485.0 87 364.5 88 244.0 89 244.0 90 200.0 91 156.0 92 106.5 93 57.0 94 37.5 95 18.0 96 18.0 97 12.5 98 7.0 99 6.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1758530.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.494133021115864 #Duplication Level Percentage of deduplicated Percentage of total 1 83.61977764744861 45.56787286316196 2 9.649485885216766 10.516807348287648 3 2.705937067353538 4.423730834853956 4 1.1557812046935183 2.5193317884749646 5 0.6320716024522173 1.7222096991450497 6 0.38194902329125024 1.2488388529511203 7 0.2720630431358876 1.0378087763943649 8 0.19337461316606194 0.8430225514222561 9 0.15635575689927822 0.766842427357787 >10 1.056182132906242 11.071441330181912 >50 0.0958827832394951 3.6112625154362 >100 0.07052420441932274 7.4376809111344935 >500 0.007251856125500571 2.7659989215346665 >1k 0.0029427821958553043 3.273437588990866 >5k 1.0509936413768943E-4 0.4088145833298364 >10k+ 3.1529809241306834E-4 2.7848990073428546 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19317 1.0984742938704486 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 16057 0.9130921849499297 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13251 0.7535270936520845 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7138 0.40590720658732005 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4683 0.2663019681211012 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4370 0.248503011037628 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4051 0.23036285988865698 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3869 0.22001330656855442 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3808 0.21654450023599253 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3240 0.1842447953688592 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2190 0.12453583390672893 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2041 0.11606284794686472 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2037 0.11583538523653278 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1907 0.10844284715074523 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1868 0.10622508572500895 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1778 0.10110717474254063 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 5.686567758298124E-5 0.0 0.0 0.0 0.0 7 5.686567758298124E-5 0.0 0.0 0.0 0.0 8 5.686567758298124E-5 0.0 0.0 0.0 0.0 9 5.686567758298124E-5 0.0 0.0 2.843283879149062E-4 0.0 10 1.1373135516596248E-4 0.0 0.0 3.980597430808687E-4 0.0 11 1.1373135516596248E-4 0.0 0.0 6.255224534127936E-4 0.0 12 1.1373135516596248E-4 0.0 0.0 8.529851637447186E-4 0.0 13 1.1373135516596248E-4 0.0 0.0 8.529851637447186E-4 0.0 14 1.1373135516596248E-4 0.0 0.0 0.0010235821964936624 0.0 15 1.1373135516596248E-4 0.0 0.0 0.001194179229242606 0.0 16 1.1373135516596248E-4 0.0 0.0 0.0015922389723234747 0.0 17 1.1373135516596248E-4 0.0 0.0 0.0024452241360681934 0.0 18 1.1373135516596248E-4 0.0 0.0 0.003070746589480987 0.0 19 1.1373135516596248E-4 0.0 0.0 0.004037463108391668 0.0 20 1.1373135516596248E-4 0.0 0.0 0.006482687244459861 0.0 21 1.1373135516596248E-4 0.0 0.0 0.010292687642519605 0.0 22 1.1373135516596248E-4 0.0 0.0 0.016263583788732636 0.0 23 1.1373135516596248E-4 0.0 0.0 0.01973239012129449 0.0 24 1.1373135516596248E-4 0.0 0.0 0.02621507736575435 0.0 25 1.1373135516596248E-4 0.0 0.0 0.030821197249975833 0.0 26 1.1373135516596248E-4 0.0 0.0 0.03844119804609532 0.0 27 1.1373135516596248E-4 0.0 0.0 0.08410433714522926 0.0 28 1.1373135516596248E-4 0.0 0.0 0.1782738992226462 0.0 29 1.1373135516596248E-4 0.0 0.0 0.30081943441397074 0.0 30 1.1373135516596248E-4 0.0 0.0 0.46976736251300805 0.0 31 1.1373135516596248E-4 0.0 0.0 0.6598693226729143 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5045 0.0 24.165512 1 TATACCG 100 2.8770773E-7 18.5 5 TGTAACG 50 0.0070363274 18.5 2 TAATACT 620 0.0 17.60484 4 AAGGTCG 85 2.7244441E-5 17.411764 5 ACGTTCG 245 0.0 17.367346 22 GTATTGG 645 0.0 17.209303 1 TTCGTTA 240 0.0 16.958332 30 ATACTGG 565 0.0 16.044249 6 CGTTCGC 255 0.0 15.960784 23 AATACTG 700 0.0 15.857143 5 CTCTAAT 490 0.0 15.857142 1 TCGAACC 200 3.6379788E-12 15.725 31 CGTTACC 260 0.0 15.653845 32 CTAATAC 510 0.0 15.598039 3 CGCCACG 300 0.0 15.416667 18 TCTAATA 520 0.0 15.298076 2 GTAAGAT 280 0.0 15.196429 3 TTGGACC 1035 0.0 15.193237 4 ATAAGAC 135 3.9753286E-7 15.074075 3 >>END_MODULE