##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088497_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2245988 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.326433622975724 31.0 31.0 34.0 30.0 34.0 2 31.463396064449142 31.0 31.0 34.0 30.0 34.0 3 31.610644847612722 31.0 31.0 34.0 30.0 34.0 4 35.32247456353284 37.0 35.0 37.0 33.0 37.0 5 35.20336751576589 37.0 35.0 37.0 33.0 37.0 6 35.28178423036989 37.0 35.0 37.0 32.0 37.0 7 35.10940040641357 37.0 35.0 37.0 32.0 37.0 8 35.16650845863825 37.0 35.0 37.0 32.0 37.0 9 36.691938247221266 39.0 35.0 39.0 32.0 39.0 10 36.55193037540717 38.0 35.0 39.0 32.0 39.0 11 36.578745745747526 38.0 35.0 39.0 32.0 39.0 12 36.42210822141525 38.0 35.0 39.0 32.0 39.0 13 36.443220088442146 38.0 35.0 39.0 32.0 39.0 14 37.361458298085296 39.0 36.0 41.0 32.0 41.0 15 37.38509466657881 39.0 36.0 41.0 32.0 41.0 16 37.243540927199966 39.0 36.0 40.0 32.0 41.0 17 37.34249960373786 39.0 36.0 40.0 32.0 41.0 18 37.212142718482916 39.0 36.0 40.0 31.0 41.0 19 37.30674295677448 39.0 36.0 40.0 31.0 41.0 20 37.21474780809158 39.0 36.0 40.0 31.0 41.0 21 37.046811024814026 39.0 36.0 40.0 31.0 41.0 22 36.96018545067917 39.0 36.0 40.0 31.0 41.0 23 36.7471286578557 39.0 35.0 40.0 30.0 41.0 24 36.94897924654985 39.0 36.0 40.0 31.0 41.0 25 36.9162693656422 39.0 36.0 40.0 30.0 41.0 26 36.714504707950354 39.0 35.0 40.0 30.0 41.0 27 36.662963916102846 39.0 35.0 40.0 30.0 41.0 28 36.4620095922151 39.0 35.0 40.0 30.0 41.0 29 36.28742317412203 38.0 35.0 40.0 30.0 41.0 30 36.094218669022275 38.0 35.0 40.0 29.0 41.0 31 35.814033734819596 38.0 35.0 40.0 28.0 41.0 32 35.67239540015352 38.0 34.0 40.0 27.0 41.0 33 35.47456486855673 38.0 34.0 40.0 27.0 41.0 34 35.349436862529984 38.0 34.0 40.0 27.0 41.0 35 35.08210818579619 38.0 33.0 40.0 25.0 41.0 36 34.93473206446339 38.0 33.0 40.0 25.0 41.0 37 34.76713366233479 38.0 33.0 40.0 24.0 41.0 38 34.67494216353783 38.0 33.0 40.0 24.0 41.0 39 34.571043567463406 38.0 33.0 40.0 24.0 41.0 40 34.42156503062349 38.0 33.0 40.0 23.0 41.0 41 34.21284797603549 38.0 33.0 40.0 22.0 41.0 42 33.949302934833135 38.0 33.0 40.0 21.0 41.0 43 33.62614136852022 37.0 32.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 5.0 14 6.0 15 16.0 16 48.0 17 96.0 18 193.0 19 450.0 20 1157.0 21 2204.0 22 4082.0 23 7117.0 24 11397.0 25 16921.0 26 24342.0 27 33562.0 28 44389.0 29 57245.0 30 71747.0 31 87350.0 32 106342.0 33 128663.0 34 155552.0 35 188474.0 36 236414.0 37 312560.0 38 392692.0 39 362963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.26985540439219 21.574736819609008 13.973004308126313 23.182403467872494 2 19.041998443446715 23.788150248353954 34.911005757822394 22.25884555037694 3 19.7338988454079 24.779339871806975 32.91509126495778 22.571670017827344 4 13.78012705321667 16.347059734958513 36.24511796144948 33.62769525037533 5 12.180296599981833 38.94949572304037 35.15780137738937 13.712406299588423 6 32.430093126054096 37.33897954931193 13.23836102419069 16.99256630044328 7 26.117993506643845 33.09087136707765 21.204432080670067 19.586703045608438 8 27.331624211705495 34.25574847238721 18.725077783140424 19.68754953276687 9 24.415268469822635 14.316772841172792 21.69374903160658 39.574209657397994 10 16.28962398730536 27.63318414880222 33.48855826478147 22.58863359911095 11 33.16722974477157 22.241392206904045 23.720696637738047 20.870681410586343 12 21.29147617885759 27.074320966986466 30.957556318199387 20.676646535956557 13 32.036190754358444 20.779229452695205 26.367772223181955 20.816807569764396 14 20.504250245326332 22.88765567759044 27.545828383766967 29.06226569331626 15 22.396335154061376 29.599312195790894 25.66273728978071 22.34161536036702 16 21.817881484674007 28.50504989340994 26.49760372717931 23.17946489473675 17 21.864720559504324 26.487007054356482 26.714790996211914 24.933481389927284 18 23.347097134980242 25.299957079022683 29.49726356507693 21.855682220920148 19 22.856399945146634 24.355250339716864 30.605417304099575 22.182932411036923 20 24.04389515883433 24.003734659312517 30.57589800123598 21.37647218061717 21 22.880843530775767 24.97515569985236 31.109338073044025 21.034662696327853 22 21.30242904236354 25.306591130495796 30.67937139468243 22.711608432458235 23 22.500654500380232 25.669193245912265 31.743001298315036 20.08715095539246 24 22.45225709131126 25.512825536022454 28.86680605595399 23.168111316712288 25 22.29718057264776 25.975962471749625 30.027052682382987 21.699804273219627 26 22.123938329145123 26.600186643917954 30.100027248587256 21.175847778349663 27 20.8056320870815 26.82004534307396 29.646284842127386 22.728037727717158 28 21.526962744235497 26.153657098791268 29.815252797432578 22.504127359540657 29 21.891969146763028 26.102855402611237 29.116718343998276 22.88845710662746 30 21.783687179094457 26.25036286925843 30.993086338840637 20.97286361280648 31 22.636407674484456 26.007040108851875 30.724384992261754 20.63216722440191 32 22.197803372057198 25.824447859917328 29.510398096516987 22.467350671508484 33 21.736046675227115 25.95721793705042 30.267214250476847 22.039521137245615 34 21.007458632904537 26.72160314302659 30.6763882977113 21.594549926357576 35 20.44022497003546 29.097484047109777 29.468367595908795 20.993923386945966 36 22.965438818016835 26.255661205669846 29.455010445291784 21.323889531021536 37 21.892369861281537 27.212344856695587 29.28435058424177 21.610934697781108 38 21.691433792166297 25.527117687182653 30.80679861156872 21.974649909082327 39 21.21133327515552 25.379832839712414 31.568556911256874 21.840276973875195 40 19.913597045042092 26.20601712920995 31.013611826955444 22.866773998792514 41 21.780436939110984 24.91500399824042 30.9775920441249 22.326967018523696 42 20.235415327241284 27.11229979857417 30.461249125106633 22.191035749077912 43 20.694812260795693 27.058381433916836 29.450691633258945 22.796114672028523 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 158.0 1 264.0 2 370.0 3 866.5 4 1363.0 5 1363.0 6 2240.5 7 3118.0 8 3592.0 9 4066.0 10 6410.5 11 8755.0 12 8755.0 13 17029.0 14 25303.0 15 40735.5 16 56168.0 17 51654.0 18 47140.0 19 47140.0 20 49907.5 21 52675.0 22 41911.0 23 31147.0 24 34891.5 25 38636.0 26 38636.0 27 42313.0 28 45990.0 29 49852.5 30 53715.0 31 59141.5 32 64568.0 33 64568.0 34 72244.0 35 79920.0 36 87705.0 37 95490.0 38 101607.5 39 107725.0 40 107725.0 41 111304.0 42 114883.0 43 121877.5 44 128872.0 45 138583.0 46 148294.0 47 148294.0 48 198382.0 49 248470.0 50 231894.0 51 215318.0 52 197508.5 53 179699.0 54 179699.0 55 158511.5 56 137324.0 57 115576.0 58 93828.0 59 83222.5 60 72617.0 61 72617.0 62 64089.0 63 55561.0 64 48754.5 65 41948.0 66 36386.5 67 30825.0 68 30825.0 69 26546.5 70 22268.0 71 18906.0 72 15544.0 73 12949.0 74 10354.0 75 10354.0 76 8331.5 77 6309.0 78 4889.0 79 3469.0 80 2754.0 81 2039.0 82 2039.0 83 1534.0 84 1029.0 85 758.0 86 487.0 87 383.0 88 279.0 89 279.0 90 212.5 91 146.0 92 106.0 93 66.0 94 51.0 95 36.0 96 36.0 97 23.5 98 11.0 99 8.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2245988.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.450837494021606 #Duplication Level Percentage of deduplicated Percentage of total 1 81.04139756014554 40.07564981035156 2 10.787204854153407 10.668726285149221 3 3.2352717822784456 4.799606974633352 4 1.4079327710439857 2.7849381865361464 5 0.7492131339288656 1.8524608467151487 6 0.48529877388876347 1.4399058482172706 7 0.34698602014472035 1.201112450641171 8 0.25520294119378273 1.0095999338376083 9 0.19275501279060503 0.8578707132299638 >10 1.295208348392728 12.283821419611895 >50 0.11613756659046325 3.979857257121632 >100 0.07599482028432128 7.182927673659134 >500 0.005788655321655082 1.9388331323004282 >1k 0.004703282448844751 4.242326837814045 >5k 5.426864364051635E-4 1.9066295737681693 >10k+ 3.6179095760344236E-4 3.775733056413333 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28526 1.2700869283362155 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 24893 1.1083318343642086 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 20645 0.9191945816273284 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10353 0.46095526779306034 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8947 0.39835475523466735 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7420 0.33036685859407977 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7235 0.32212994904692277 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6988 0.31113256170558345 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6345 0.28250373554978925 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5693 0.25347419487548467 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4101 0.18259224893454462 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3457 0.15391889894336033 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3417 0.15213794552775883 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3275 0.14581556090237346 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3146 0.14007198613705862 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3072 0.13677722231819583 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2937 0.13076650454054073 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2819 0.12551269196451628 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2750 0.12244054732260368 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2647 0.1178545922774298 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2561 0.11402554243388656 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2491 0.11090887395658391 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2449 0.10903887287020232 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2416 0.10756958630233109 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2265 0.10084648715843539 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 4.4523835390037704E-5 0.0 0.0 0.0 0.0 6 1.3357150617011312E-4 0.0 0.0 0.0 0.0 7 1.3357150617011312E-4 0.0 4.4523835390037704E-5 0.0 0.0 8 2.2261917695018851E-4 0.0 4.4523835390037704E-5 0.0 0.0 9 2.2261917695018851E-4 0.0 4.4523835390037704E-5 8.904767078007541E-5 0.0 10 2.6714301234022624E-4 0.0 4.4523835390037704E-5 2.6714301234022624E-4 0.0 11 3.116668477302639E-4 0.0 4.4523835390037704E-5 3.5619068312030163E-4 0.0 12 3.5619068312030163E-4 0.0 4.4523835390037704E-5 7.56905201630641E-4 0.0 13 4.007145185103393E-4 0.0 4.4523835390037704E-5 8.904767078007541E-4 0.0 14 4.007145185103393E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.0012911912263110935 0.0 15 4.007145185103393E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.0014247627324812065 0.0 16 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.0019145249217716212 0.0 17 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.002537858617232149 0.0 18 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.003116668477302639 0.0 19 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.004007145185103393 0.0 20 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.007569052016306409 0.0 21 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.013490722123181424 0.0 22 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.022039298518068663 0.0 23 4.4523835390037703E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.027560254106433337 0.0 24 4.897621892904148E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.03553002064125009 0.0 25 4.897621892904148E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.04105097622961476 0.0 26 4.897621892904148E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.048441932904361024 0.0 27 4.897621892904148E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.09501386472234045 0.0 28 4.897621892904148E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.19243201655574296 0.0 29 4.897621892904148E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.315273278396857 0.0 30 5.788098600704901E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.4890052840887841 0.0 31 5.788098600704901E-4 4.4523835390037704E-5 4.4523835390037704E-5 0.6716420568587187 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7170 0.0 25.466528 1 GTATTGG 1045 0.0 18.588518 1 TGGACCC 1470 0.0 17.241497 5 TTGGACC 1560 0.0 17.076923 4 ATTGGAC 1225 0.0 16.914286 3 GGACCCT 1560 0.0 16.128206 6 TAATACT 490 0.0 15.857142 4 GTATCAA 11525 0.0 15.827332 2 GTATTAG 480 0.0 15.802083 1 TTAACGG 270 0.0 15.759259 35 ATTAGAC 165 9.749783E-10 15.696971 3 CGAACTA 390 0.0 15.653847 24 CGGTATA 85 5.366983E-4 15.235293 26 TAACGGC 295 0.0 15.050847 36 ATAATAC 210 9.094947E-12 14.97619 3 TATTGGA 1335 0.0 14.827715 2 CCGAATT 100 1.09410175E-4 14.8 14 CGTTTAG 90 8.2783506E-4 14.388888 26 CGATAGA 105 1.6567411E-4 14.095238 37 AGCGCGT 80 0.0063010873 13.875001 8 >>END_MODULE