##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088496_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2402090 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26506958523619 31.0 31.0 33.0 30.0 34.0 2 31.39734647744256 31.0 31.0 34.0 30.0 34.0 3 31.54180775907647 31.0 31.0 34.0 30.0 34.0 4 35.260245452918085 37.0 35.0 37.0 33.0 37.0 5 35.13096345265998 35.0 35.0 37.0 32.0 37.0 6 35.21945805527686 37.0 35.0 37.0 32.0 37.0 7 35.04098763993023 37.0 35.0 37.0 32.0 37.0 8 35.10157487854327 37.0 35.0 37.0 32.0 37.0 9 36.61574836912855 39.0 35.0 39.0 32.0 39.0 10 36.477875933041645 38.0 35.0 39.0 32.0 39.0 11 36.49990133591997 38.0 35.0 39.0 32.0 39.0 12 36.350304110170725 38.0 35.0 39.0 32.0 39.0 13 36.38678692305451 38.0 35.0 39.0 32.0 39.0 14 37.262723711434624 39.0 36.0 40.0 32.0 41.0 15 37.29890262229975 39.0 36.0 40.0 32.0 41.0 16 37.14450041422261 39.0 36.0 40.0 31.0 41.0 17 37.25476980462847 39.0 36.0 40.0 32.0 41.0 18 37.13156709365594 39.0 36.0 40.0 31.0 41.0 19 37.2362426053978 39.0 36.0 40.0 31.0 41.0 20 37.151014325025294 39.0 36.0 40.0 31.0 41.0 21 36.99580157279702 39.0 36.0 40.0 31.0 41.0 22 36.90969530700348 39.0 36.0 40.0 31.0 41.0 23 36.7097298602467 39.0 35.0 40.0 30.0 41.0 24 36.903148091869994 39.0 36.0 40.0 30.0 41.0 25 36.865624518648346 39.0 36.0 40.0 30.0 41.0 26 36.64985158757582 39.0 35.0 40.0 30.0 41.0 27 36.59010944635713 39.0 35.0 40.0 30.0 41.0 28 36.3917376118297 38.0 35.0 40.0 30.0 41.0 29 36.21919453475931 38.0 35.0 40.0 30.0 41.0 30 36.028359053990485 38.0 35.0 40.0 29.0 41.0 31 35.741254490880856 38.0 34.0 40.0 28.0 41.0 32 35.6044332227352 38.0 34.0 40.0 27.0 41.0 33 35.39617624651866 38.0 34.0 40.0 27.0 41.0 34 35.286104600577 38.0 34.0 40.0 26.0 41.0 35 35.007293232143674 38.0 33.0 40.0 25.0 41.0 36 34.83433010420092 38.0 33.0 40.0 25.0 41.0 37 34.668288448809164 38.0 33.0 40.0 24.0 41.0 38 34.55824094850734 38.0 33.0 40.0 24.0 41.0 39 34.44118455178615 38.0 33.0 40.0 23.0 41.0 40 34.28449641770292 38.0 33.0 40.0 23.0 41.0 41 34.046177287278994 37.0 33.0 40.0 21.0 41.0 42 33.785400213980324 37.0 33.0 40.0 20.0 41.0 43 33.439475207007234 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 5.0 14 7.0 15 8.0 16 50.0 17 128.0 18 233.0 19 554.0 20 1231.0 21 2558.0 22 4508.0 23 7807.0 24 12307.0 25 18735.0 26 26717.0 27 37055.0 28 49437.0 29 63512.0 30 79149.0 31 96311.0 32 116893.0 33 140760.0 34 168965.0 35 203664.0 36 254808.0 37 334972.0 38 412927.0 39 368786.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.16610951296579 21.684075117918148 14.437510667793463 22.712304701322598 2 19.11518719115437 24.3931742774001 34.53088768530738 21.960750846138154 3 20.07243691951592 24.830918075509246 33.013542373516394 22.083102631458438 4 13.977577859280876 16.544259374128366 35.908562959755876 33.56959980683488 5 12.203039852794857 39.21876365997943 34.65244849277088 13.925747994454829 6 32.24541961375302 37.349058528198356 13.060043545412537 17.34547831263608 7 25.785212044511237 33.43280226802493 21.060076849743346 19.721908837720484 8 27.714115624310498 34.13544038732937 18.58439941883943 19.56604456952071 9 24.530846054893864 14.342135390430833 21.881320017151733 39.24569853752357 10 16.63272400284752 27.91902051963082 33.00733944190268 22.440916035618983 11 32.926285026789174 22.49045622770171 23.53371439038504 21.04954435512408 12 21.331340624206423 27.596801119025514 30.75575852694945 20.316099729818614 13 32.35952857719735 20.870034012047842 26.095983081399947 20.67445432935485 14 20.404397836883714 23.333721883859475 28.04133067453759 28.220549604719224 15 22.674212872956467 29.709960909041712 25.753406408585853 21.862419809415968 16 21.564637461543906 28.489690228093036 26.748290030764878 23.197382279598184 17 21.763589207731602 26.69546103601447 26.989871320391824 24.551078435862102 18 23.16973968502429 25.30816913604403 29.677281034432518 21.844810144499167 19 22.744734793450704 24.53226148895337 31.125228446894166 21.597775270701764 20 23.81355403003218 24.10713170613924 30.87157433734789 21.20773992648069 21 22.53117077211928 25.177949202569426 31.542073777418832 20.74880624789246 22 20.900340953086687 25.674183731667004 31.06265793538127 22.362817379865035 23 22.19429746595673 25.764604989821365 31.883692950722082 20.157404593499827 24 22.143425100641526 25.85298635771349 29.30169144370111 22.701897097943874 25 21.911169023641914 26.105308294027285 30.415638048532735 21.56788463379807 26 21.788192782118905 26.94103884533885 30.477126169294237 20.793642203248005 27 20.523918754084985 26.900865496296976 30.13717221253159 22.438043537086454 28 21.047004899899672 26.58085250760796 30.18800294743328 22.184139645059094 29 21.489119891427883 26.315500251863998 29.565128700423383 22.630251156284736 30 21.294247925764648 26.600210649892386 31.521883026864106 20.583658397478864 31 22.27002318814033 26.3884367363421 31.017364045477063 20.324176030040505 32 21.6342018825273 26.175039236664738 29.93784579262226 22.252913088185704 33 21.25603120615797 26.29472667552007 30.671415309168264 21.777826809153694 34 20.49302898725693 26.99536653497579 31.170106032663224 21.341498445104055 35 19.984430225345427 29.1999467130707 30.01432086224912 20.801302199334746 36 22.53516729181671 26.659200945842993 29.821821830156235 20.983809932184055 37 21.427465249012318 27.50883605526854 29.67877972931905 21.384918966400093 38 21.135469528618827 25.899487529609633 31.30906835297595 21.65597458879559 39 20.654804774175823 25.583138017309924 31.959335412078648 21.802721796435602 40 19.497146235153554 26.40225803362905 31.470094792451576 22.630500938765824 41 21.09317302848769 25.21770624747616 31.592030273636706 22.097090450399442 42 19.73377350557223 27.34618602966583 30.993051883984364 21.926988580777575 43 20.147371663842737 27.202602733452952 30.085717021427172 22.56430858127714 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 196.0 1 348.5 2 501.0 3 1151.0 4 1801.0 5 1801.0 6 2934.5 7 4068.0 8 4750.0 9 5432.0 10 8323.5 11 11215.0 12 11215.0 13 21428.5 14 31642.0 15 50187.0 16 68732.0 17 62621.0 18 56510.0 19 56510.0 20 59092.5 21 61675.0 22 48088.0 23 34501.0 24 37803.5 25 41106.0 26 41106.0 27 45157.0 28 49208.0 29 53301.0 30 57394.0 31 62501.0 32 67608.0 33 67608.0 34 75553.0 35 83498.0 36 91244.0 37 98990.0 38 105889.5 39 112789.0 40 112789.0 41 116207.0 42 119625.0 43 126999.5 44 134374.0 45 145738.5 46 157103.0 47 157103.0 48 211290.0 49 265477.0 50 247413.0 51 229349.0 52 209999.0 53 190649.0 54 190649.0 55 170134.0 56 149619.0 57 125527.5 58 101436.0 59 89719.0 60 78002.0 61 78002.0 62 68886.5 63 59771.0 64 51415.5 65 43060.0 66 36629.0 67 30198.0 68 30198.0 69 25764.0 70 21330.0 71 17900.5 72 14471.0 73 11739.0 74 9007.0 75 9007.0 76 7177.5 77 5348.0 78 4135.0 79 2922.0 80 2295.5 81 1669.0 82 1669.0 83 1267.5 84 866.0 85 642.5 86 419.0 87 334.5 88 250.0 89 250.0 90 212.0 91 174.0 92 118.0 93 62.0 94 45.0 95 28.0 96 28.0 97 18.5 98 9.0 99 7.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2402090.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.10938081402937 #Duplication Level Percentage of deduplicated Percentage of total 1 80.27806094362427 39.42405865892303 2 11.291191186927977 11.090068156857164 3 3.489583544545652 5.141138615143886 4 1.505902550236644 2.958157672335574 5 0.8027029383615993 1.9710122140270059 6 0.4826447257479104 1.4221430180782137 7 0.3422825564210695 1.1766499086497255 8 0.25034963597969334 0.983561248798431 9 0.18298665657937105 0.8087725261658112 >10 1.1640030331916662 11.014568166211514 >50 0.11938280106310621 4.044908525652454 >100 0.07975207215939131 7.563572307953119 >500 0.005195409655348927 1.7483593577418959 >1k 0.005110239005261228 4.608558152026728 >5k 5.110239005261228E-4 1.8494546823271114 >10k+ 3.406826003507485E-4 4.195016789108209 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 34584 1.4397462209992131 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29021 1.2081562306158387 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23993 0.9988385114629343 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12697 0.5285813603986529 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8791 0.36597296520946343 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7956 0.33121156992452405 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7443 0.30985516779138167 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6926 0.2883322440041797 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6759 0.2813799649471918 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6342 0.2640200825114796 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3927 0.16348263387300227 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3898 0.16227535188107023 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3769 0.15690502853764846 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3653 0.15207590056992037 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3349 0.13942025486139153 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3179 0.132343084563859 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2917 0.12143591622295585 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2905 0.12093635126077706 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2852 0.11872993934448751 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2745 0.11427548509839347 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2655 0.11052874788205272 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2587 0.10769787976303968 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2539 0.10569961991432461 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2528 0.10524168536566074 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2442 0.10166146980337956 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.163041351489745E-5 0.0 3 0.0 0.0 0.0 4.163041351489745E-5 0.0 4 0.0 0.0 0.0 4.163041351489745E-5 0.0 5 0.0 0.0 0.0 4.163041351489745E-5 0.0 6 0.0 0.0 0.0 4.163041351489745E-5 0.0 7 0.0 0.0 0.0 4.163041351489745E-5 0.0 8 4.163041351489745E-5 0.0 0.0 4.163041351489745E-5 0.0 9 8.32608270297949E-5 0.0 0.0 1.665216540595898E-4 0.0 10 1.2489124054469234E-4 0.0 0.0 2.914128946042821E-4 0.0 11 1.2489124054469234E-4 0.0 0.0 3.74673721634077E-4 0.0 12 1.2489124054469234E-4 0.0 0.0 5.411953756936668E-4 0.0 13 1.2489124054469234E-4 0.0 0.0 5.828257892085642E-4 0.0 14 1.2489124054469234E-4 0.0 0.0 8.326082702979488E-4 0.0 15 1.2489124054469234E-4 0.0 0.0 0.0011656515784171284 0.0 16 1.665216540595898E-4 0.0 0.0 0.0019149990216852824 0.0 17 1.665216540595898E-4 0.0 0.0 0.002914128946042821 0.0 18 2.081520675744872E-4 0.0 0.0 0.0035802155622811803 0.0 19 2.081520675744872E-4 0.0 0.0 0.0045377150731238216 0.0 20 2.081520675744872E-4 0.0 0.0 0.007202061538077258 0.0 21 2.497824810893847E-4 0.0 0.0 0.01253075446798413 0.0 22 2.497824810893847E-4 0.0 0.0 0.019816076833091185 0.0 23 2.914128946042821E-4 0.0 0.0 0.023812596530521337 0.0 24 2.914128946042821E-4 0.0 0.0 0.03026531062533044 0.0 25 2.914128946042821E-4 0.0 0.0 0.03555237314172242 0.0 26 2.914128946042821E-4 0.0 4.163041351489745E-5 0.04379519501767211 0.0 27 2.914128946042821E-4 0.0 4.163041351489745E-5 0.09999625326278366 0.0 28 3.330433081191796E-4 0.0 4.163041351489745E-5 0.21244000016652165 0.0 29 3.330433081191796E-4 4.163041351489745E-5 4.163041351489745E-5 0.35843786036326697 0.0 30 3.330433081191796E-4 4.163041351489745E-5 4.163041351489745E-5 0.559387866399677 0.0 31 4.163041351489744E-4 4.163041351489745E-5 4.163041351489745E-5 0.7786136239691269 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10260 0.0 21.637426 1 GTATTGG 960 0.0 19.848957 1 TTGGACC 1480 0.0 17.875002 4 ATTGGAC 1080 0.0 17.472221 3 TGGACCC 1460 0.0 17.359589 5 GGACCCT 1525 0.0 16.983606 6 CTAATAC 615 0.0 16.243902 3 TAATACT 600 0.0 15.725 4 TCTAATA 490 0.0 15.479591 2 TATACTG 255 0.0 15.235294 5 TCTATAC 195 4.1836756E-11 15.179486 3 TATACGG 175 2.242814E-9 14.8 2 GACCCTC 1690 0.0 14.66864 7 TTCGTTA 230 1.8189894E-12 14.47826 30 AGTTCCG 230 1.8189894E-12 14.47826 32 CTCTAAT 435 0.0 14.45977 1 TGCGATA 275 0.0 14.127272 12 TATTGGA 1285 0.0 14.108949 2 GTATCAA 15775 0.0 14.084627 2 TATACCG 135 6.573635E-6 13.703703 5 >>END_MODULE