##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088493_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2429258 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28145301981099 31.0 31.0 33.0 30.0 34.0 2 31.41138364060137 31.0 31.0 34.0 30.0 34.0 3 31.549926356113676 31.0 31.0 34.0 30.0 34.0 4 35.2723930517055 37.0 35.0 37.0 33.0 37.0 5 35.14380852095578 37.0 35.0 37.0 32.0 37.0 6 35.23283117725659 37.0 35.0 37.0 32.0 37.0 7 35.05316479352955 37.0 35.0 37.0 32.0 37.0 8 35.11756388164616 37.0 35.0 37.0 32.0 37.0 9 36.62971450541688 39.0 35.0 39.0 32.0 39.0 10 36.48885338650732 38.0 35.0 39.0 32.0 39.0 11 36.5181458700558 38.0 35.0 39.0 32.0 39.0 12 36.36083898869531 38.0 35.0 39.0 32.0 39.0 13 36.389034429443065 38.0 35.0 39.0 32.0 39.0 14 37.288481091757234 39.0 36.0 40.0 32.0 41.0 15 37.31597961188149 39.0 36.0 40.0 32.0 41.0 16 37.164466269124155 39.0 36.0 40.0 31.0 41.0 17 37.28022918932448 39.0 36.0 40.0 32.0 41.0 18 37.1549394918119 39.0 36.0 40.0 31.0 41.0 19 37.246894730819044 39.0 36.0 40.0 31.0 41.0 20 37.15715415982987 39.0 36.0 40.0 31.0 41.0 21 37.00232293152889 39.0 36.0 40.0 31.0 41.0 22 36.91452575230791 39.0 36.0 40.0 31.0 41.0 23 36.71369199977936 39.0 35.0 40.0 30.0 41.0 24 36.90138552595072 39.0 36.0 40.0 30.0 41.0 25 36.85873834726488 39.0 36.0 40.0 30.0 41.0 26 36.648989526843174 39.0 35.0 40.0 30.0 41.0 27 36.578908868469306 39.0 35.0 40.0 30.0 41.0 28 36.37178265956107 38.0 35.0 40.0 30.0 41.0 29 36.201012407903974 38.0 35.0 40.0 30.0 41.0 30 36.01269235297362 38.0 35.0 40.0 29.0 41.0 31 35.719661312219614 38.0 34.0 40.0 27.0 41.0 32 35.58452292840036 38.0 34.0 40.0 27.0 41.0 33 35.377420183446965 38.0 34.0 40.0 27.0 41.0 34 35.260201263101735 38.0 34.0 40.0 26.0 41.0 35 35.00260079415196 38.0 33.0 40.0 25.0 41.0 36 34.8362664649041 38.0 33.0 40.0 25.0 41.0 37 34.67420051719496 38.0 33.0 40.0 24.0 41.0 38 34.55503779343322 38.0 33.0 40.0 24.0 41.0 39 34.44266809042102 38.0 33.0 40.0 23.0 41.0 40 34.28552792663439 38.0 33.0 40.0 23.0 41.0 41 34.06073747621702 38.0 33.0 40.0 21.0 41.0 42 33.80817228964565 37.0 33.0 40.0 20.0 41.0 43 33.46608182416195 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 2.0 13 4.0 14 10.0 15 13.0 16 41.0 17 112.0 18 252.0 19 596.0 20 1310.0 21 2518.0 22 4705.0 23 7963.0 24 12775.0 25 19049.0 26 27238.0 27 37630.0 28 49919.0 29 64523.0 30 79852.0 31 96708.0 32 117723.0 33 141562.0 34 170381.0 35 204462.0 36 257410.0 37 336280.0 38 417920.0 39 378297.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.15758803717019 21.682505522262353 14.207218829782592 22.952687610784857 2 19.512172029483903 23.89091648561001 34.33217056401585 22.264740920890247 3 20.093090153454266 24.71499527839365 32.84278573951387 22.34912882863821 4 14.118426284898517 16.593626531228878 35.77108730320123 33.51685988067138 5 12.239869128762775 39.117211922323605 34.786877309861694 13.856041639051925 6 32.439411540478616 37.22000709681721 13.060695899735638 17.27988546296853 7 25.83315563847068 33.35429995496567 21.06639146603613 19.74615294052752 8 27.561378824315902 34.16516483634097 18.428219645669582 19.84523669367354 9 24.55926871497387 14.187789028584035 21.61787673437733 39.635065522064764 10 16.704195272795232 27.676105214020087 33.04416410278365 22.575535410401034 11 33.29654569419963 22.330686983432802 23.409576092782242 20.96319122958533 12 21.31803209045725 27.451756873909645 30.50626981572151 20.723941219911595 13 31.940411434273347 20.951912065330237 26.144238281812797 20.963438218583615 14 20.573030941958407 23.180576126537403 27.589165086623158 28.657227844881028 15 22.650331912048866 29.577056039333822 25.820188716060628 21.952423332556688 16 21.747010815648235 28.31959388422308 26.72523873544926 23.20815656467942 17 21.909941224851373 26.589806434722043 26.792872556146776 24.70737978427981 18 23.051400880433448 25.32826896113957 29.615010015403882 22.005320143023095 19 22.96989451099883 24.490893927281498 30.844603578541268 21.6946079831784 20 23.894333166752975 24.054382037642768 30.731235628327664 21.320049167276593 21 22.582862750683542 25.142245080596627 31.27341764440006 21.00147452431977 22 21.24574664362534 25.4682705583351 30.77783421933776 22.50814857870181 23 22.2451464603595 25.729008610859776 31.943786950583263 20.082057978197458 24 22.336203071061206 25.810021002297823 28.963329543424372 22.890446383216602 25 22.067273216760015 26.044701715503255 30.308061144596415 21.579963923140316 26 21.876680039748763 26.835766312182567 30.256563938453635 21.030989709615035 27 20.811910468134716 26.85165593773901 29.73920431670905 22.59722927741722 28 21.256819983715193 26.39826646655069 30.02365331306926 22.32126023666486 29 21.725646267296433 26.296301175091326 29.339699611980286 22.638352945631958 30 21.623763305503164 26.43021037699577 31.24974786539758 20.69627845210348 31 22.28906933722149 26.24472163928245 30.93635999140478 20.52984903209128 32 21.87400432560066 26.055610396260914 29.772753655642997 22.29763162249543 33 21.402543492704357 26.104884701419117 30.50532302456141 21.987248781315117 34 20.555371228580906 26.804110555568823 31.14831771676784 21.492200499082436 35 20.2365495966258 28.962053433599888 29.783044863904944 21.018352105869365 36 22.694954591072666 26.29712447175228 29.65407544196623 21.353845495208827 37 21.53562939794785 27.161544800922748 29.61389856491159 21.688927236217808 38 21.353804330375777 25.463207283870222 31.21763929562031 21.965349090133696 39 20.721389000262633 25.38001315628064 31.977500948849404 21.921096894607324 40 19.614343145108506 26.097804350134897 31.48504605109873 22.802806453657865 41 21.0911726955309 24.978779528563866 31.521765082177357 22.40828269372788 42 19.82259603549726 27.046736081552474 30.883833664435805 22.24683421851446 43 20.261248496454474 26.75574187673767 30.054609267521194 22.928400359286663 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 330.0 2 487.0 3 1066.5 4 1646.0 5 1646.0 6 2781.0 7 3916.0 8 4458.5 9 5001.0 10 7843.5 11 10686.0 12 10686.0 13 20857.0 14 31028.0 15 48777.5 16 66527.0 17 60331.0 18 54135.0 19 54135.0 20 57227.0 21 60319.0 22 46667.0 23 33015.0 24 36009.0 25 39003.0 26 39003.0 27 42434.5 28 45866.0 29 49799.5 30 53733.0 31 59908.5 32 66084.0 33 66084.0 34 75199.0 35 84314.0 36 93652.5 37 102991.0 38 109691.5 39 116392.0 40 116392.0 41 121088.5 42 125785.0 43 134922.0 44 144059.0 45 153856.0 46 163653.0 47 163653.0 48 216403.5 49 269154.0 50 250499.0 51 231844.0 52 211498.5 53 191153.0 54 191153.0 55 168539.0 56 145925.0 57 123882.5 58 101840.0 59 90078.5 60 78317.0 61 78317.0 62 69237.0 63 60157.0 64 52547.5 65 44938.0 66 38788.0 67 32638.0 68 32638.0 69 28044.5 70 23451.0 71 19845.5 72 16240.0 73 13336.0 74 10432.0 75 10432.0 76 8469.5 77 6507.0 78 5142.5 79 3778.0 80 2884.0 81 1990.0 82 1990.0 83 1519.5 84 1049.0 85 776.0 86 503.0 87 373.5 88 244.0 89 244.0 90 207.5 91 171.0 92 120.0 93 69.0 94 47.5 95 26.0 96 26.0 97 19.5 98 13.0 99 9.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2429258.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.29798596148714 #Duplication Level Percentage of deduplicated Percentage of total 1 80.04231092014908 37.05797787306051 2 11.18909145431327 10.36064798147183 3 3.4674508750613597 4.816079758072115 4 1.4952520487296899 2.769086334438883 5 0.8541947261586349 1.9773747720034418 6 0.5244184665831986 1.4567711282288127 7 0.3693260115620418 1.1969335348958015 8 0.2584014474951584 0.957077327084704 9 0.20748992354450727 0.8645729010672275 >10 1.3412341537433619 12.00903348249543 >50 0.13681081729630015 4.357869357592933 >100 0.09841370803275737 8.956804354839024 >500 0.009058334370126358 2.7766867675677345 >1k 0.005650248171464944 4.67619945422044 >5k 5.381188734728519E-4 1.7562166983337641 >10k+ 3.587459156485679E-4 4.0106682746272595 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32470 1.3366221290616311 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28794 1.1853002027779675 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22937 0.9441977756170814 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12388 0.5099499517959805 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8280 0.3408448176356731 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7631 0.3141288409876596 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6859 0.2823495898747684 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6831 0.2811969745494303 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6512 0.2680653928071864 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6182 0.2544809979014168 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3745 0.15416229976396084 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3744 0.15412113493091306 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3650 0.15025164062442112 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3559 0.14650564081707254 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3346 0.137737531377894 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3329 0.13703772921608162 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2931 0.12065412566306254 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2831 0.11653764235828389 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2649 0.10904564274358672 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2625 0.10805768675043984 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2558 0.10529964293623814 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2526 0.10398236827870898 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2509 0.1032825661168966 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2493 0.10262392878813201 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 8.232966609557322E-5 0.0 0.0 0.0 0.0 7 8.232966609557322E-5 0.0 0.0 0.0 0.0 8 1.2349449914335982E-4 0.0 0.0 0.0 0.0 9 1.6465933219114644E-4 0.0 0.0 3.293186643822929E-4 0.0 10 1.6465933219114644E-4 0.0 0.0 4.939779965734393E-4 4.116483304778661E-5 11 2.4698899828671963E-4 0.0 0.0 5.763076626690125E-4 4.116483304778661E-5 12 2.8815383133450626E-4 0.0 0.0 9.056263270513054E-4 4.116483304778661E-5 13 2.8815383133450626E-4 0.0 0.0 9.879559931468785E-4 4.116483304778661E-5 14 4.528131635256527E-4 0.0 0.0 0.0011937801583858116 4.116483304778661E-5 15 4.939779965734393E-4 0.0 0.0 0.0015642636558158912 4.116483304778661E-5 16 4.939779965734393E-4 0.0 0.0 0.0022640658176282633 4.116483304778661E-5 17 4.939779965734393E-4 0.0 0.0 0.0029638679794406356 4.116483304778661E-5 18 5.351428296212259E-4 0.0 0.0 0.003457845976014075 4.116483304778661E-5 19 6.174724957167991E-4 0.0 0.0 0.00436347230306538 4.116483304778661E-5 20 6.586373287645858E-4 0.0 0.0 0.007903647945175028 4.116483304778661E-5 21 6.586373287645858E-4 0.0 0.0 0.012925757577004995 4.116483304778661E-5 22 6.586373287645858E-4 0.0 0.0 0.020582416523893303 4.116483304778661E-5 23 6.586373287645858E-4 0.0 0.0 0.02535753715743655 4.116483304778661E-5 24 6.586373287645858E-4 0.0 0.0 0.03190274561203462 4.116483304778661E-5 25 6.586373287645858E-4 0.0 0.0 0.03754232773958139 4.116483304778661E-5 26 6.586373287645858E-4 0.0 0.0 0.04622810751266436 4.116483304778661E-5 27 6.586373287645858E-4 0.0 0.0 0.10686390659205404 4.116483304778661E-5 28 6.586373287645858E-4 0.0 0.0 0.22755919708816438 4.116483304778661E-5 29 6.586373287645858E-4 0.0 0.0 0.3771522003838209 4.116483304778661E-5 30 6.586373287645858E-4 0.0 0.0 0.5946671782083254 4.116483304778661E-5 31 6.586373287645858E-4 0.0 0.0 0.834699319709969 4.116483304778661E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9330 0.0 23.952839 1 GTATTGG 1020 0.0 20.132353 1 GTATTAG 555 0.0 16.666666 1 ATTGGAC 1395 0.0 15.913979 3 TGGACCC 1575 0.0 15.387301 5 GTATCAA 14570 0.0 15.376459 2 TACCCCG 315 0.0 15.269842 5 TAGCGAA 400 0.0 15.262501 10 GGACCCT 1610 0.0 15.167702 6 TTACACC 245 0.0 15.10204 4 TTGGACC 1735 0.0 14.927955 4 TCTAACG 100 1.09415974E-4 14.8 2 GGTAAGA 280 0.0 14.535715 2 CTAGGAC 180 3.3360266E-9 14.388889 3 TACGCGA 105 1.6568285E-4 14.095239 5 CCGGTCT 635 0.0 13.984252 9 TCTAATA 640 0.0 13.875001 2 GTATACT 160 1.7857565E-7 13.875001 4 TTCGTTA 230 4.0017767E-11 13.673912 30 TCACGTA 630 0.0 13.507937 25 >>END_MODULE