##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088492_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 536788 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.656188290349263 31.0 30.0 31.0 28.0 34.0 2 30.79275617189654 31.0 31.0 33.0 27.0 34.0 3 30.832758929037162 31.0 30.0 34.0 27.0 34.0 4 34.60324746454839 35.0 35.0 37.0 32.0 37.0 5 34.35707951742587 35.0 35.0 37.0 30.0 37.0 6 34.601671423355214 35.0 35.0 37.0 31.0 37.0 7 34.44190630192925 35.0 35.0 37.0 30.0 37.0 8 34.548194072892834 35.0 35.0 37.0 30.0 37.0 9 35.96048719419957 37.0 35.0 39.0 30.0 39.0 10 35.683273471091006 37.0 35.0 39.0 30.0 39.0 11 35.81771388332079 37.0 35.0 39.0 30.0 39.0 12 35.58303091723362 37.0 35.0 39.0 30.0 39.0 13 35.67615334172895 37.0 35.0 39.0 30.0 39.0 14 36.40090314984687 38.0 35.0 40.0 30.0 41.0 15 36.48025104883119 38.0 35.0 40.0 30.0 41.0 16 36.26802201241458 38.0 34.0 40.0 30.0 41.0 17 36.397076685767935 38.0 35.0 40.0 30.0 41.0 18 36.250536524661506 38.0 35.0 40.0 30.0 41.0 19 36.373551569707224 38.0 35.0 40.0 30.0 41.0 20 36.27341706595527 38.0 34.0 40.0 30.0 41.0 21 36.10089830622145 38.0 34.0 40.0 29.0 41.0 22 35.995974202105856 38.0 34.0 40.0 29.0 41.0 23 35.787457990864176 38.0 34.0 40.0 27.0 41.0 24 35.96529356095889 38.0 34.0 40.0 29.0 41.0 25 35.90812015171725 38.0 34.0 40.0 29.0 41.0 26 35.62260333688533 38.0 34.0 40.0 27.0 41.0 27 35.53788273955453 38.0 34.0 40.0 27.0 41.0 28 35.30661639231876 38.0 34.0 40.0 27.0 41.0 29 35.12729420180779 38.0 33.0 40.0 26.0 41.0 30 34.93580705977034 37.0 33.0 40.0 26.0 41.0 31 34.61964686244849 37.0 33.0 40.0 25.0 41.0 32 34.467657622748646 37.0 33.0 40.0 25.0 41.0 33 34.252596928396315 37.0 33.0 40.0 24.0 41.0 34 34.116315938508315 37.0 33.0 40.0 24.0 41.0 35 33.828243179802826 36.0 32.0 39.0 23.0 40.0 36 33.68812082237308 36.0 32.0 39.0 23.0 40.0 37 33.48894163058787 36.0 31.0 39.0 21.0 40.0 38 33.360717825286706 36.0 31.0 39.0 21.0 40.0 39 33.240910750612905 36.0 31.0 39.0 20.0 40.0 40 33.06260013264082 36.0 31.0 39.0 18.0 40.0 41 32.830774905549305 36.0 31.0 39.0 18.0 40.0 42 32.560763280848306 36.0 30.0 39.0 15.0 40.0 43 32.19280609849699 36.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 5.0 15 14.0 16 25.0 17 44.0 18 149.0 19 293.0 20 549.0 21 1082.0 22 1904.0 23 2909.0 24 4460.0 25 6282.0 26 8590.0 27 11503.0 28 14654.0 29 18475.0 30 22842.0 31 26963.0 32 31893.0 33 38116.0 34 43893.0 35 51936.0 36 64695.0 37 76426.0 38 77524.0 39 31559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.23408869050724 25.464429160115355 15.697631094584827 20.60385105479258 2 22.507582136709463 26.068578284164325 30.93884364031983 20.48499593880638 3 23.089562359814302 25.401648322987846 31.824854504944224 19.68393481225363 4 17.58999828610178 19.361647428780078 33.26415642674576 29.78419785837239 5 12.10049404979247 41.10132864371037 34.04304865235437 12.755128654142789 6 31.990469235526874 38.6424435717639 12.989485606980782 16.377601585728442 7 25.11810994284522 33.977100829377704 21.348092729345662 19.55669649843141 8 27.651139742319124 35.47750694873954 18.34858454361871 18.522768765322624 9 24.683674001654285 14.042228961899298 21.590460293449183 39.68363674299724 10 16.624067602107353 29.332436641653686 32.99328598999978 21.050209766239185 11 33.77683554773952 22.7728637748981 22.787767237717684 20.6625334396447 12 20.022802298113966 28.832798050627062 31.083407229669813 20.060992421589155 13 32.084919931146 21.24488624932003 26.19153185242591 20.47866196710806 14 19.849363249551033 23.879073302681878 28.292361230131817 27.97920221763527 15 23.00256339560497 30.4554125651095 25.48398995506606 21.058034084219468 16 21.197381461582598 28.881606891361205 27.375798266727276 22.545213380328917 17 21.55096611697728 27.855689769517948 27.8754368577539 22.717907255750873 18 22.041662630312153 26.327339657369393 29.825927554267235 21.805070158051223 19 22.480197023778477 25.617003360730866 31.385388645051677 20.51741097043898 20 22.885384919185974 25.26621310461486 31.276593366468695 20.57180860973047 21 21.915542076201405 26.29846419815644 31.74903313784958 20.036960587792574 22 20.783251488483348 26.647577814705247 31.211949596488743 21.35722110032266 23 21.636102148334167 26.467432207873497 32.06032921749368 19.83613642629865 24 21.697392639179714 26.921242650729898 29.74638032146769 21.634984388622698 25 21.59306839944261 27.011036014217904 30.573522507954724 20.82237307838476 26 21.236689344769257 27.80781239521003 30.73578395940297 20.21971430061775 27 20.97438839914454 27.156158483423624 30.39170026155577 21.477752855876062 28 20.834482141925676 27.595065463460433 30.729077401134152 20.841374993479736 29 21.315863990998306 26.97657175644761 30.33096865056596 21.37659560198812 30 21.257554192716675 27.04251957942428 31.635953113705966 20.063973114153075 31 21.624179378078495 27.282092744249127 31.09719293277793 19.996534944894446 32 21.216569669962816 26.897583403503805 30.45019635312265 21.435650573410733 33 20.985007116403494 27.341147715671738 30.76838528432081 20.905459883603957 34 20.65787610751358 27.3189788147276 31.299693733839057 20.72345134391976 35 20.13066611027072 28.85478065828595 30.613389270997114 20.40116396044621 36 22.21603314530131 26.909692467044717 30.298367325648112 20.575907062005857 37 21.06585840219975 27.506576152969142 30.296318099510422 21.131247345320688 38 20.98053607755762 26.07081380358726 31.819079413101637 21.12957070575348 39 20.311929476813937 26.145144824399953 32.28686185235139 21.25606384643472 40 19.518692668241467 26.75152946787186 31.807715522701702 21.922062341184976 41 20.879751410240168 25.655938657347033 31.71233336065635 21.751976571756447 42 19.948657570586526 27.268865920996742 30.95859072855578 21.82388577986095 43 20.540697631094584 26.779473460658583 30.483542851181472 22.196286057065358 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 38.0 1 66.5 2 95.0 3 157.5 4 220.0 5 220.0 6 434.5 7 649.0 8 779.5 9 910.0 10 1532.5 11 2155.0 12 2155.0 13 4655.0 14 7155.0 15 11594.0 16 16033.0 17 13904.0 18 11775.0 19 11775.0 20 13385.0 21 14995.0 22 12075.5 23 9156.0 24 9941.5 25 10727.0 26 10727.0 27 11607.5 28 12488.0 29 13570.0 30 14652.0 31 16139.0 32 17626.0 33 17626.0 34 19746.5 35 21867.0 36 23909.0 37 25951.0 38 27225.5 39 28500.0 40 28500.0 41 29426.0 42 30352.0 43 31594.0 44 32836.0 45 34084.0 46 35332.0 47 35332.0 48 44346.5 49 53361.0 50 49257.0 51 45153.0 52 41404.0 53 37655.0 54 37655.0 55 33840.0 56 30025.0 57 25587.0 58 21149.0 59 18689.5 60 16230.0 61 16230.0 62 14304.5 63 12379.0 64 10800.0 65 9221.0 66 7802.5 67 6384.0 68 6384.0 69 5375.5 70 4367.0 71 3643.0 72 2919.0 73 2384.0 74 1849.0 75 1849.0 76 1493.0 77 1137.0 78 895.0 79 653.0 80 518.5 81 384.0 82 384.0 83 282.0 84 180.0 85 155.0 86 130.0 87 94.0 88 58.0 89 58.0 90 43.0 91 28.0 92 19.0 93 10.0 94 7.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 536788.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.94644858076287 #Duplication Level Percentage of deduplicated Percentage of total 1 89.41075239045941 57.17500080303834 2 6.144303526631986 7.858127790607446 3 1.570722509261794 3.013263785194684 4 0.7292340817149973 1.865277188389116 5 0.41373966010025715 1.32285909502117 6 0.2958770958545602 1.1352173697773449 7 0.20600223995655884 0.9221178151432845 8 0.16627202022250837 0.8506004153262556 9 0.1278782598070386 0.7359624508813406 >10 0.8061289562992062 9.962997205479178 >50 0.07943954549532743 3.5452684084215385 >100 0.04497679991906804 5.46404230385764 >500 0.002628514280984484 1.278933646539872 >1k 0.0014602857116580467 2.164737134498197 >5k 5.841142846632187E-4 2.7055945878246384 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 7747 1.443214080791672 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 6740 1.2556167425501314 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 3925 0.7312011445859445 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2910 0.5421134600624455 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1795 0.3343964470144638 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1583 0.2949022705425605 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1378 0.2567121470673711 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 976 0.1818222463989508 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 920 0.1713898224252405 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 914 0.17027206271377154 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 906 0.16878171643181292 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 886 0.16505585072691642 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 628 0.11699218313375112 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 551 0.10264760016989947 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 3.725865704896533E-4 0.0 10 0.0 0.0 0.0 3.725865704896533E-4 0.0 11 0.0 0.0 0.0 5.588798557344799E-4 0.0 12 0.0 0.0 0.0 5.588798557344799E-4 0.0 13 0.0 0.0 0.0 9.314664262241332E-4 0.0 14 0.0 0.0 0.0 9.314664262241332E-4 0.0 15 0.0 0.0 0.0 0.0013040529967137864 0.0 16 0.0 0.0 0.0 0.0014903462819586132 0.0 17 0.0 0.0 0.0 0.0016766395672034398 0.0 18 3.725865704896533E-4 0.0 0.0 0.0018629328524482664 0.0 19 3.725865704896533E-4 0.0 0.0 0.002049226137693093 0.0 20 3.725865704896533E-4 0.0 0.0 0.004843625416365492 0.0 21 3.725865704896533E-4 0.0 0.0 0.008010611265527545 0.0 22 3.725865704896533E-4 0.0 0.0 0.014717169534341304 0.0 23 3.725865704896533E-4 0.0 0.0 0.018070448668748185 0.0 24 3.725865704896533E-4 0.0 0.0 0.025335886793296424 0.0 25 3.725865704896533E-4 0.0 0.0 0.02924804578343778 0.0 26 3.725865704896533E-4 0.0 0.0 0.03483684434078258 0.0 27 3.725865704896533E-4 0.0 0.0 0.07451731409793065 0.0 28 3.725865704896533E-4 0.0 0.0 0.1589081723138371 0.0 29 3.725865704896533E-4 0.0 0.0 0.26155577248373657 0.0 30 3.725865704896533E-4 0.0 0.0 0.4178558388041461 0.0 31 3.725865704896533E-4 0.0 0.0 0.5980014456358935 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACGTG 25 0.0054937657 29.6 5 GGTATCA 2400 0.0 23.202084 1 ATCACGT 105 4.0017767E-11 22.90476 24 TCACGTA 105 4.0017767E-11 22.90476 25 GGGTGTA 45 0.003823192 20.555555 7 CACGTAG 125 4.110916E-10 19.24 26 GTCATAG 50 0.007030117 18.5 1 GATCACG 135 1.1477823E-9 17.814814 23 CGTAGGA 135 1.1477823E-9 17.814814 28 ATTACTC 190 0.0 17.526316 3 ATACCAT 75 2.0646804E-4 17.266666 6 GTATCAA 3245 0.0 17.160246 2 TTAATAC 65 0.0015784514 17.076923 3 TATGCGG 65 0.0015784514 17.076923 5 AGGGCTA 65 0.0015784514 17.076923 5 ACGTAGG 145 2.9667717E-9 16.586208 27 TAGTACC 90 4.438858E-5 16.444445 4 GTATTGG 135 2.2115273E-8 16.444443 1 ACAAACG 80 3.378365E-4 16.1875 22 TAATACC 105 9.324474E-6 15.857142 4 >>END_MODULE