##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088491_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 604658 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.391113654330216 31.0 31.0 34.0 30.0 34.0 2 31.622442769300992 31.0 31.0 34.0 30.0 34.0 3 31.735751449579762 31.0 31.0 34.0 30.0 34.0 4 35.43815346857232 37.0 35.0 37.0 33.0 37.0 5 35.3066328403825 37.0 35.0 37.0 33.0 37.0 6 35.35817106529642 37.0 35.0 37.0 33.0 37.0 7 35.203116472452194 37.0 35.0 37.0 32.0 37.0 8 35.24622348501136 37.0 35.0 37.0 32.0 37.0 9 36.78640322297894 39.0 37.0 39.0 32.0 39.0 10 36.63259726986164 39.0 35.0 39.0 32.0 39.0 11 36.67738787876783 39.0 35.0 39.0 32.0 39.0 12 36.5319039853934 38.0 35.0 39.0 32.0 39.0 13 36.54615832420972 38.0 35.0 39.0 32.0 39.0 14 37.510301691203956 39.0 36.0 41.0 32.0 41.0 15 37.53848952631074 39.0 36.0 41.0 32.0 41.0 16 37.40730627892131 39.0 36.0 41.0 32.0 41.0 17 37.455260659744845 39.0 36.0 41.0 32.0 41.0 18 37.331063179516356 39.0 36.0 41.0 32.0 41.0 19 37.41218010842493 39.0 36.0 41.0 32.0 41.0 20 37.319901498036906 39.0 36.0 41.0 31.0 41.0 21 37.16495440397713 39.0 36.0 40.0 31.0 41.0 22 37.07764554508499 39.0 36.0 40.0 31.0 41.0 23 36.87532125598272 39.0 36.0 40.0 30.0 41.0 24 37.07516645773313 39.0 36.0 40.0 31.0 41.0 25 37.039895279645684 39.0 36.0 41.0 31.0 41.0 26 36.86722907825581 39.0 36.0 40.0 30.0 41.0 27 36.804193444889506 39.0 35.0 40.0 30.0 41.0 28 36.604483856990235 39.0 35.0 40.0 30.0 41.0 29 36.45372921552349 39.0 35.0 40.0 30.0 41.0 30 36.264678545557985 38.0 35.0 40.0 30.0 41.0 31 36.018736211213614 38.0 35.0 40.0 29.0 41.0 32 35.8599191609141 38.0 35.0 40.0 29.0 41.0 33 35.65387210621542 38.0 34.0 40.0 27.0 41.0 34 35.54518752749488 38.0 34.0 40.0 27.0 41.0 35 35.31857347459225 38.0 34.0 40.0 26.0 41.0 36 35.18241551422457 38.0 34.0 40.0 25.0 41.0 37 35.014083994588674 38.0 33.0 40.0 25.0 41.0 38 34.952301962431655 38.0 33.0 40.0 25.0 41.0 39 34.84238858991364 38.0 33.0 40.0 24.0 41.0 40 34.740056362439596 38.0 33.0 40.0 24.0 41.0 41 34.529585319304466 38.0 33.0 40.0 23.0 41.0 42 34.317400910928164 38.0 33.0 40.0 22.0 41.0 43 34.00381537993378 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 3.0 15 5.0 16 8.0 17 18.0 18 47.0 19 120.0 20 271.0 21 512.0 22 985.0 23 1626.0 24 2636.0 25 4101.0 26 5962.0 27 7930.0 28 10885.0 29 14387.0 30 18112.0 31 22329.0 32 27432.0 33 34016.0 34 41390.0 35 50537.0 36 63677.0 37 84278.0 38 107528.0 39 105862.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.4846078278961 21.36066999857771 13.484978285245544 23.66974388828065 2 19.213836582001726 23.46202316019965 34.508432866182204 22.815707391616417 3 19.48390660505608 25.160173188810862 32.24020851456526 23.115711691567796 4 13.925723301436516 16.453102414918845 36.618882078794954 33.00229220484968 5 12.50177786451184 38.667478144670206 35.278620310985715 13.552123679832237 6 32.26815819851883 37.69932755375766 13.821862937396014 16.21065131032749 7 26.21498433825402 32.61016971577321 21.976059193792192 19.19878675218057 8 27.068690069427674 34.27044709571361 19.172325512934584 19.48853732192413 9 24.77681598523463 14.34827621564587 21.53796030152582 39.336947497593684 10 16.568704953874754 27.311802705000183 33.65786940716901 22.461622933956054 11 33.35339977309487 22.58053312781771 23.377181811867203 20.688885287220213 12 20.81292234618578 27.25292644767786 30.887212275368885 21.046938930767475 13 30.963122955455813 21.094569161410252 26.03570944236246 21.90659844077148 14 20.63976661186985 22.683731960877058 27.416655365512405 29.259846061740685 15 22.992005398092807 29.578538611909543 25.14760410016902 22.28185188982863 16 22.25357144038448 28.170800684023035 26.265922223802544 23.30970565178994 17 21.918175232941596 26.925468612008775 27.038259644294794 24.118096510754842 18 22.928167658411862 25.933502905774837 28.917338396250443 22.22099103956286 19 22.92568691723255 25.24964525401136 29.908807954248516 21.915859874507575 20 23.60805612428844 24.97742525526827 29.74408673994225 21.67043188050104 21 22.660247611046245 25.851969212348138 30.03218348223293 21.455599694372687 22 21.63487459026425 26.359528857635222 29.559023447965625 22.4465731041349 23 22.326009082820374 26.308094823850837 30.488639859226208 20.877256234102585 24 22.468072861022264 26.40864753298559 28.214130963288337 22.90914864270381 25 22.38703531583143 26.353740461550167 29.188731481267094 22.07049274135131 26 22.211068074845617 27.189254090742203 29.23090408131539 21.368773753096793 27 21.497441528930402 27.269960870442468 28.70416003757496 22.528437563052172 28 21.51001061757225 26.824419754638157 29.32947219750669 22.3360974302829 29 22.26217134313943 26.592222380254622 28.659010548111496 22.486595728494454 30 21.997724333424845 26.76355890437239 29.97975715197682 21.258959610225947 31 22.387862229557864 26.604791468896465 29.888962024814024 21.11838427673164 32 21.79496508770247 26.41989355966513 29.15383572201145 22.631305630620947 33 21.57599833294193 26.536157629602187 29.77286333762226 22.114980699833627 34 21.253171214140888 26.97309884265155 29.974464904127622 21.799265039079945 35 21.03321216290862 28.540596502485705 29.036579355602672 21.389611979003007 36 22.845310903022867 26.600326134773706 28.834647023606735 21.719715938596696 37 21.77197688610752 26.948787579094297 28.9730723814123 22.30616315338588 38 21.6275977494716 25.911507000651607 30.175404939651834 22.285490310224954 39 21.129464920665896 25.868672869622166 30.72943713636469 22.272425073347247 40 20.419807560637583 26.51052330408264 30.438363504658835 22.631305630620947 41 21.39440807861634 25.27643725874792 30.581584962077734 22.747569700558003 42 20.27840531341684 26.963175877934304 30.128105474499634 22.63031333414922 43 20.62388986832226 26.393597703164435 29.724902341488907 23.2576100870244 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 37.0 1 74.0 2 111.0 3 289.5 4 468.0 5 468.0 6 718.0 7 968.0 8 1033.5 9 1099.0 10 1640.0 11 2181.0 12 2181.0 13 4251.0 14 6321.0 15 9756.0 16 13191.0 17 12119.5 18 11048.0 19 11048.0 20 11912.5 21 12777.0 22 10381.5 23 7986.0 24 8912.0 25 9838.0 26 9838.0 27 11076.0 28 12314.0 29 13652.5 30 14991.0 31 16848.0 32 18705.0 33 18705.0 34 21014.0 35 23323.0 36 25694.0 37 28065.0 38 29798.0 39 31531.0 40 31531.0 41 32958.0 42 34385.0 43 36558.0 44 38731.0 45 39843.5 46 40956.0 47 40956.0 48 49691.0 49 58426.0 50 55831.0 51 53236.0 52 49177.5 53 45119.0 54 45119.0 55 41176.0 56 37233.0 57 31872.5 58 26512.0 59 23867.5 60 21223.0 61 21223.0 62 18698.0 63 16173.0 64 14068.0 65 11963.0 66 10290.0 67 8617.0 68 8617.0 69 7343.5 70 6070.0 71 5182.0 72 4294.0 73 3593.5 74 2893.0 75 2893.0 76 2316.0 77 1739.0 78 1371.0 79 1003.0 80 763.5 81 524.0 82 524.0 83 412.0 84 300.0 85 221.5 86 143.0 87 109.0 88 75.0 89 75.0 90 64.0 91 53.0 92 35.5 93 18.0 94 14.0 95 10.0 96 10.0 97 7.5 98 5.0 99 4.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 604658.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.470038481422385 #Duplication Level Percentage of deduplicated Percentage of total 1 86.25081047355015 52.15589828389445 2 7.601240463579212 9.192946066783596 3 2.1811827848274428 3.956886208005945 4 1.0396116929431738 2.514614363120416 5 0.619549274459628 1.8732084233855515 6 0.4430127383924913 1.6073398403012553 7 0.29582732884431917 1.252208297135066 8 0.23061425952173842 1.11562025181154 9 0.1713405181280508 0.9324870952167071 >10 1.0327456612695278 11.627168863010933 >50 0.07786177615151828 3.220214914116294 >100 0.050993967170229845 5.453011108142968 >500 0.0027416111381836357 1.0552236319872412 >1k 0.001919127796728545 2.1081262693401035 >5k 5.483222276367272E-4 1.9350463837478522 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6305 1.0427382090371746 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 5367 0.887609193957576 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4350 0.7194149420002712 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2462 0.4071723188976248 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1321 0.2184706065246801 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1204 0.1991208253260521 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1182 0.19548240492972888 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1148 0.18985939158995663 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1049 0.1734864998065022 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 963 0.15926358371178417 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 679 0.11229488405015728 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 673 0.11130258757843275 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 638 0.10551419149337311 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 1.6538274528741866E-4 8 1.6538274528741866E-4 0.0 0.0 0.0 1.6538274528741866E-4 9 1.6538274528741866E-4 0.0 0.0 0.0 1.6538274528741866E-4 10 1.6538274528741866E-4 0.0 0.0 1.6538274528741866E-4 1.6538274528741866E-4 11 1.6538274528741866E-4 0.0 0.0 8.269137264370934E-4 1.6538274528741866E-4 12 1.6538274528741866E-4 0.0 0.0 8.269137264370934E-4 3.307654905748373E-4 13 1.6538274528741866E-4 0.0 0.0 8.269137264370934E-4 3.307654905748373E-4 14 1.6538274528741866E-4 0.0 0.0 8.269137264370934E-4 3.307654905748373E-4 15 1.6538274528741866E-4 0.0 0.0 0.0013230619622993493 3.307654905748373E-4 16 1.6538274528741866E-4 0.0 0.0 0.001984592943449024 4.96148235862256E-4 17 1.6538274528741866E-4 0.0 0.0 0.002976889415173536 4.96148235862256E-4 18 1.6538274528741866E-4 0.0 0.0 0.002976889415173536 4.96148235862256E-4 19 3.307654905748373E-4 0.0 0.0 0.003473037651035792 4.96148235862256E-4 20 3.307654905748373E-4 0.0 0.0 0.006946075302071584 4.96148235862256E-4 21 3.307654905748373E-4 0.0 0.0 0.012734471387131237 4.96148235862256E-4 22 3.307654905748373E-4 0.0 0.0 0.019019015708053148 4.96148235862256E-4 23 3.307654905748373E-4 0.0 0.0 0.024642029047825382 4.96148235862256E-4 24 3.307654905748373E-4 0.0 0.0 0.03224963533104664 4.96148235862256E-4 25 3.307654905748373E-4 0.0 0.0 0.03621882121794469 4.96148235862256E-4 26 3.307654905748373E-4 0.0 0.0 0.044322575737028205 4.96148235862256E-4 27 3.307654905748373E-4 0.0 0.0 0.0965835232478525 4.96148235862256E-4 28 3.307654905748373E-4 0.0 0.0 0.19498625669386663 6.615309811496747E-4 29 3.307654905748373E-4 0.0 0.0 0.31670795722540673 6.615309811496747E-4 30 3.307654905748373E-4 0.0 0.0 0.4792791958429393 6.615309811496747E-4 31 3.307654905748373E-4 0.0 0.0 0.6694693529234708 6.615309811496747E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGGTA 60 1.3356548E-6 24.666668 25 GTCGGGT 55 1.9007262E-5 23.545454 24 GGTATCA 1975 0.0 23.32405 1 TACCCTC 130 1.8189894E-12 21.346153 5 CTACCCT 90 9.4596544E-8 20.555557 4 CTCTAAT 210 0.0 18.500002 1 CGGGTAA 70 1.2179847E-4 18.5 26 TAGACTA 50 0.0070311204 18.5 5 ACGTTCG 50 0.0070311204 18.5 22 TAGCGAA 90 2.148785E-6 18.5 10 ACGGGTA 60 9.229914E-4 18.5 5 CAGATCG 50 0.0070311204 18.5 9 CTCTATA 50 0.0070311204 18.5 2 CTAATAC 230 0.0 18.5 3 ATACAAC 60 9.229914E-4 18.5 6 GGTAAAC 195 0.0 18.025642 35 ATGCTAG 190 0.0 17.526316 15 GATTAAT 95 3.6006713E-6 17.526316 1 AATACTG 285 0.0 17.526316 5 ATACTGG 255 0.0 17.411764 6 >>END_MODULE