##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088487_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2551186 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.355674576451893 31.0 31.0 34.0 30.0 34.0 2 31.573609293873517 31.0 31.0 34.0 30.0 34.0 3 31.680764554211258 31.0 31.0 34.0 30.0 34.0 4 35.38482885998904 37.0 35.0 37.0 33.0 37.0 5 35.25922806098811 37.0 35.0 37.0 33.0 37.0 6 35.316396766053124 37.0 35.0 37.0 33.0 37.0 7 35.149405021821224 37.0 35.0 37.0 32.0 37.0 8 35.20027665564173 37.0 35.0 37.0 32.0 37.0 9 36.73368503903674 39.0 35.0 39.0 32.0 39.0 10 36.587273134926264 39.0 35.0 39.0 32.0 39.0 11 36.622280382535806 39.0 35.0 39.0 32.0 39.0 12 36.47838573902491 38.0 35.0 39.0 32.0 39.0 13 36.496273497894705 38.0 35.0 39.0 32.0 39.0 14 37.434588070019196 39.0 36.0 41.0 32.0 41.0 15 37.45842325882942 39.0 36.0 41.0 32.0 41.0 16 37.32017932051995 39.0 36.0 41.0 32.0 41.0 17 37.411277735139656 39.0 36.0 41.0 32.0 41.0 18 37.285988947885414 39.0 36.0 40.0 32.0 41.0 19 37.37750089566186 39.0 36.0 41.0 32.0 41.0 20 37.286684702722575 39.0 36.0 40.0 31.0 41.0 21 37.13716796815285 39.0 36.0 40.0 31.0 41.0 22 37.052324683500146 39.0 36.0 40.0 31.0 41.0 23 36.85853207096621 39.0 36.0 40.0 30.0 41.0 24 37.04116124814106 39.0 36.0 40.0 31.0 41.0 25 37.00466567314182 39.0 36.0 40.0 31.0 41.0 26 36.82352795915312 39.0 36.0 40.0 30.0 41.0 27 36.75688758091335 39.0 35.0 40.0 30.0 41.0 28 36.55790287340868 39.0 35.0 40.0 30.0 41.0 29 36.380747620910434 38.0 35.0 40.0 30.0 41.0 30 36.197495596165865 38.0 35.0 40.0 30.0 41.0 31 35.91561963729811 38.0 35.0 40.0 29.0 41.0 32 35.769595004049094 38.0 34.0 40.0 28.0 41.0 33 35.55465105249088 38.0 34.0 40.0 27.0 41.0 34 35.43255568194557 38.0 34.0 40.0 27.0 41.0 35 35.195429890254964 38.0 34.0 40.0 26.0 41.0 36 35.03725404576538 38.0 34.0 40.0 25.0 41.0 37 34.85847249083368 38.0 33.0 40.0 25.0 41.0 38 34.775649443043356 38.0 33.0 40.0 24.0 41.0 39 34.66382184599633 38.0 33.0 40.0 24.0 41.0 40 34.537444545399666 38.0 33.0 40.0 23.0 41.0 41 34.30123323034855 38.0 33.0 40.0 22.0 41.0 42 34.06822944309039 38.0 33.0 40.0 21.0 41.0 43 33.736654246299565 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 3.0 14 3.0 15 14.0 16 32.0 17 109.0 18 219.0 19 548.0 20 1163.0 21 2346.0 22 4342.0 23 7310.0 24 11967.0 25 18138.0 26 26263.0 27 36210.0 28 48658.0 29 63331.0 30 78820.0 31 97326.0 32 118911.0 33 144950.0 34 176682.0 35 213591.0 36 267571.0 37 353144.0 38 441791.0 39 437739.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.530880147507865 21.39514719820507 13.83176295260322 23.242209701683844 2 19.183705147331477 23.824683892119193 34.517632191459185 22.47397876909014 3 19.888749781474186 24.863024491354217 32.57073376852962 22.67749195864198 4 13.951001612583324 16.437335419683237 36.18038825863735 33.43127470909608 5 12.450327024372195 38.84401215748283 34.922267525770366 13.783393292374605 6 32.36443755962913 37.291792915138295 13.599753212819449 16.74401631241313 7 25.97364519874286 32.93272227113194 21.573025251784856 19.52060727834035 8 27.28777909568334 34.23317625606286 18.952165777015082 19.526878871238708 9 24.629682038079544 14.32235830707757 21.695360510758526 39.35259914408436 10 16.473240289026357 27.704056074312106 33.36103286863443 22.461670768027105 11 33.24708586516232 22.41776961773857 23.501696857853563 20.833447659245543 12 21.05671636642722 27.31298305964363 30.87364073023292 20.756659843696227 13 31.625487126379653 20.952255147213883 26.264255134670698 21.158002591735762 14 20.55102999154119 23.001223744564292 27.75379764548724 28.693948618407283 15 22.70218635567928 29.526032206197435 25.604091587206888 22.167689850916396 16 21.82416334990863 28.42528925762371 26.577795582133174 23.17275181033449 17 21.734205189272753 26.80286737227313 27.141337401506593 24.321590036947523 18 22.95963524415703 25.64615045708153 29.471194965792378 21.92301933296906 19 22.756004462238348 24.87713557537553 30.6425717293839 21.72428823300222 20 23.665307037589574 24.62752617802073 30.456971777048008 21.25019500734168 21 22.51999658198187 25.40238148061333 30.987430943882572 21.090190993522228 22 21.258073695920253 25.878395381598988 30.48621307893662 22.37731784354414 23 22.228916276586656 26.043259879914675 31.386853016596987 20.340970826901682 24 22.166866704348486 26.139842410549445 28.970016298302042 22.72327458680002 25 22.07302799560675 26.304471724131446 30.13186808017918 21.49063220008263 26 21.90310702551676 26.942292721894834 30.005377890910346 21.149222361678056 27 20.907570047813056 27.027312003123257 29.652757580199957 22.412360368863737 28 21.33035380407387 26.55412031894186 29.92431755269902 22.191208324285256 29 21.64691245561868 26.53107221504038 29.29547277227141 22.526542557069533 30 21.553073746876944 26.696995044657662 30.892141929283085 20.85778927918231 31 22.13460719837754 26.48909174007697 30.71493023244875 20.661370829096743 32 21.814559973283014 26.30831307478169 29.63527551499577 22.241851436939523 33 21.491651333928612 26.360210506015637 30.261533263352806 21.886604896702945 34 20.725693853760564 27.021197200047354 30.7155965891942 21.537512356997883 35 20.426342885230632 28.894678788610474 29.62010609967286 21.058872226486034 36 22.504552784469656 26.584380754676452 29.540966436786654 21.370100024067238 37 21.454805725650736 27.33853980070446 29.457319066504756 21.74933540714005 38 21.356694494246987 25.847115812018412 30.82064577024176 21.97554392349284 39 20.85022417024866 25.757824008127983 31.529296570301028 21.862655251322327 40 19.92880958111247 26.323560885015834 31.11568501865407 22.63194451521763 41 21.260935110180128 25.27577369897765 31.091069016528 22.37222217431422 42 19.997875497905678 27.06278570045461 30.59580916483549 22.343529636804217 43 20.306986632883685 26.848571605519943 29.88010282276557 22.964338938830803 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 174.0 1 324.0 2 474.0 3 1158.5 4 1843.0 5 1843.0 6 2998.0 7 4153.0 8 4619.5 9 5086.0 10 7864.5 11 10643.0 12 10643.0 13 20479.5 14 30316.0 15 47796.5 16 65277.0 17 59610.5 18 53944.0 19 53944.0 20 57247.0 21 60550.0 22 48555.0 23 36560.0 24 40631.0 25 44702.0 26 44702.0 27 48889.5 28 53077.0 29 58019.5 30 62962.0 31 70202.5 32 77443.0 33 77443.0 34 86201.0 35 94959.0 36 103553.0 37 112147.0 38 119101.5 39 126056.0 40 126056.0 41 130274.0 42 134492.0 43 142605.0 44 150718.0 45 159621.5 46 168525.0 47 168525.0 48 215940.5 49 263356.0 50 248138.0 51 232920.0 52 213352.0 53 193784.0 54 193784.0 55 173828.0 56 153872.0 57 131677.0 58 109482.0 59 97356.0 60 85230.0 61 85230.0 62 75237.0 63 65244.0 64 56959.5 65 48675.0 66 42056.0 67 35437.0 68 35437.0 69 30153.5 70 24870.0 71 21125.0 72 17380.0 73 14430.5 74 11481.0 75 11481.0 76 9257.0 77 7033.0 78 5423.0 79 3813.0 80 2990.5 81 2168.0 82 2168.0 83 1650.0 84 1132.0 85 867.0 86 602.0 87 454.0 88 306.0 89 306.0 90 244.5 91 183.0 92 129.5 93 76.0 94 50.5 95 25.0 96 25.0 97 18.0 98 11.0 99 8.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2551186.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.22605018544994 #Duplication Level Percentage of deduplicated Percentage of total 1 80.4809918768158 40.4224233697974 2 11.17808426233978 11.228620422749321 3 3.4724163177024496 5.232172687130956 4 1.4363444421216711 2.885676321343806 5 0.8005315771252199 2.010376958386434 6 0.47717625824309523 1.4380007216293753 7 0.34234935017542134 1.2036398950006821 8 0.23237607702655275 0.9337066005306895 9 0.18649259526690398 0.8430107804181292 >10 1.1882270629811806 11.420974723339645 >50 0.11475826507084835 3.965703560265605 >100 0.07937844084144913 7.610105704766077 >500 0.006023435397862342 2.004853272548797 >1k 0.00406777455440017 3.6370011510236484 >5k 4.6935860243078886E-4 1.4975794645278862 >10k+ 3.129057349538592E-4 3.6661543665415333 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 31999 1.2542793822167415 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 27226 1.0671899265674867 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22164 0.8687724062455657 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11921 0.46727286838356746 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7515 0.29456887894492995 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6768 0.2652883796007034 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6305 0.24713995765106894 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6283 0.24627761362754422 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5965 0.23381282274205017 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5280 0.2069625656459388 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3571 0.139974114000312 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3467 0.13589757861637686 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3357 0.13158585849875312 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3356 0.1315466610431384 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3298 0.12927320861748223 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3177 0.12453031648809612 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2819 0.11049762737801164 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2811 0.11018404773309354 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2725 0.1068130665502241 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 3.919745561476113E-5 0.0 0.0 0.0 0.0 6 3.919745561476113E-5 0.0 0.0 0.0 0.0 7 3.919745561476113E-5 0.0 0.0 0.0 0.0 8 7.839491122952227E-5 0.0 0.0 3.919745561476113E-5 0.0 9 1.5678982245904453E-4 0.0 0.0 7.839491122952227E-5 0.0 10 2.351847336885668E-4 0.0 0.0 1.9598727807380566E-4 0.0 11 3.1357964491808907E-4 0.0 0.0 2.7438218930332794E-4 0.0 12 3.1357964491808907E-4 0.0 0.0 4.703694673771336E-4 0.0 13 3.1357964491808907E-4 0.0 0.0 5.487643786066559E-4 0.0 14 3.919745561476113E-4 0.0 0.0 6.663567454509393E-4 0.0 15 3.919745561476113E-4 0.0 0.0 9.407389347542673E-4 0.0 16 3.919745561476113E-4 0.0 0.0 0.001489503313360923 0.0 17 3.919745561476113E-4 0.0 0.0 0.0025086371593447125 0.0 18 3.919745561476113E-4 0.0 0.0 0.0032141913604104132 0.0 19 4.311720117623725E-4 0.0 0.0 0.004350917573238486 0.0 20 4.311720117623725E-4 0.0 0.0 0.0076827013004931825 0.0 21 4.703694673771336E-4 0.0 0.0 0.012621580707953085 0.0 22 4.703694673771336E-4 0.0 0.0 0.01897156851754439 0.0 23 4.703694673771336E-4 0.0 0.0 0.023008906445864785 0.0 24 4.703694673771336E-4 0.0 0.0 0.02869253751000515 0.0 25 4.703694673771336E-4 0.0 0.0 0.03347462709500601 0.0 26 4.703694673771336E-4 0.0 0.0 0.04221565969709774 0.0 27 4.703694673771336E-4 0.0 0.0 0.0947010527652629 0.0 28 4.703694673771336E-4 0.0 0.0 0.20633540635610262 0.0 29 4.703694673771336E-4 0.0 0.0 0.3412530485821104 0.0 30 4.703694673771336E-4 0.0 0.0 0.5246579434035777 0.0 31 5.095669229918948E-4 0.0 0.0 0.7252313237843105 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8655 0.0 23.277296 1 GTATTAG 475 0.0 15.189473 1 TAATACT 590 0.0 15.050846 4 GTATCAA 13435 0.0 14.995533 2 GTATTGG 1160 0.0 14.991379 1 CGAAACG 75 0.00410623 14.8 24 TCTAATA 565 0.0 14.40708 2 CGAATTA 90 8.27889E-4 14.388889 15 CTCTAAT 540 0.0 14.046297 1 CTAATAC 580 0.0 14.034483 3 TAGTACT 440 0.0 13.875 4 TGCTAGA 470 0.0 13.776595 16 ACGTTCG 215 1.9826984E-10 13.767442 22 CGTACTG 135 6.574017E-6 13.703704 5 ATGCTAG 495 0.0 13.454546 15 TACTGGT 620 0.0 13.42742 7 GGACCCT 1685 0.0 13.394658 6 GGTAAAC 485 0.0 13.350515 35 TTGGACC 1705 0.0 13.346042 4 GTTATCG 125 4.8489084E-5 13.32 11 >>END_MODULE