##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088486_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2865160 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39044451269737 31.0 31.0 34.0 30.0 34.0 2 31.604520166413046 31.0 31.0 34.0 30.0 34.0 3 31.70482939870723 31.0 31.0 34.0 30.0 34.0 4 35.39591541135574 37.0 35.0 37.0 33.0 37.0 5 35.29017576679836 37.0 35.0 37.0 33.0 37.0 6 35.36174454480727 37.0 35.0 37.0 33.0 37.0 7 35.19640159711849 37.0 35.0 37.0 32.0 37.0 8 35.25876146532829 37.0 35.0 37.0 32.0 37.0 9 36.785539725530164 39.0 37.0 39.0 32.0 39.0 10 36.65002896871379 39.0 35.0 39.0 32.0 39.0 11 36.688062795795 39.0 35.0 39.0 32.0 39.0 12 36.53332274637368 38.0 35.0 39.0 32.0 39.0 13 36.56249773136579 38.0 35.0 39.0 32.0 39.0 14 37.491348825196496 39.0 36.0 41.0 32.0 41.0 15 37.51666748104818 39.0 36.0 41.0 32.0 41.0 16 37.37710773569364 39.0 36.0 41.0 32.0 41.0 17 37.48508006533667 39.0 36.0 41.0 32.0 41.0 18 37.362406636976644 39.0 36.0 41.0 32.0 41.0 19 37.46202201622248 39.0 36.0 41.0 32.0 41.0 20 37.386848552960394 39.0 36.0 41.0 32.0 41.0 21 37.24344574125005 39.0 36.0 41.0 31.0 41.0 22 37.148695709838194 39.0 36.0 40.0 31.0 41.0 23 36.96485187563696 39.0 36.0 40.0 31.0 41.0 24 37.1449761967918 39.0 36.0 41.0 31.0 41.0 25 37.098614737047846 39.0 36.0 41.0 31.0 41.0 26 36.93597565231959 39.0 36.0 40.0 31.0 41.0 27 36.86902720964972 39.0 35.0 40.0 31.0 41.0 28 36.67957880188192 39.0 35.0 40.0 30.0 41.0 29 36.49577440701392 39.0 35.0 40.0 30.0 41.0 30 36.302467575981794 38.0 35.0 40.0 30.0 41.0 31 36.01552862667356 38.0 35.0 40.0 29.0 41.0 32 35.875589844895224 38.0 35.0 40.0 29.0 41.0 33 35.65181874659705 38.0 34.0 40.0 28.0 41.0 34 35.54281366485641 38.0 34.0 40.0 27.0 41.0 35 35.28082585265744 38.0 34.0 40.0 26.0 41.0 36 35.108066565217996 38.0 34.0 40.0 25.0 41.0 37 34.9294922447612 38.0 33.0 40.0 25.0 41.0 38 34.83277478395622 38.0 33.0 40.0 24.0 41.0 39 34.713119337139986 38.0 33.0 40.0 24.0 41.0 40 34.55567996202655 38.0 33.0 40.0 23.0 41.0 41 34.31660500635218 38.0 33.0 40.0 22.0 41.0 42 34.06595478088484 38.0 33.0 40.0 21.0 41.0 43 33.720865152382416 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 0.0 13 3.0 14 10.0 15 16.0 16 44.0 17 95.0 18 215.0 19 592.0 20 1183.0 21 2391.0 22 4443.0 23 7603.0 24 12556.0 25 18920.0 26 27423.0 27 38830.0 28 52574.0 29 68646.0 30 86508.0 31 106581.0 32 131429.0 33 160640.0 34 196548.0 35 239130.0 36 304802.0 37 406361.0 38 504740.0 39 492872.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.57589803012746 21.500055843303688 14.157324547320218 22.766721579248628 2 19.170971254659424 24.038622624914492 34.74235295760097 22.048053162825113 3 19.78367700233146 24.745424339303913 33.28924039146156 22.18165826690307 4 13.6467771433358 16.363902888494884 36.4093453768725 33.57997459129682 5 12.092308980999315 39.141095087185356 34.99019251978947 13.776403412025855 6 31.845307068366164 37.54963073615435 13.162092169372741 17.442970026106742 7 25.5983609990367 33.460225606946906 21.229320526602354 19.712092867414036 8 27.545233075988772 34.03481829985061 18.66848622764523 19.75146239651538 9 24.33218389199905 14.310265395300787 22.07457873207779 39.28297198062237 10 16.621235812310655 27.642191012020273 33.07595387343115 22.66061930223792 11 32.77635454913513 22.48792388557707 23.762337879908976 20.973383685378828 12 21.252914322411314 27.67053148864287 30.723484901366767 20.353069287579054 13 32.10735177093077 20.811228692289436 26.34233341244468 20.739086124335117 14 20.334990018009467 23.353460190704883 27.945804073769004 28.36574571751665 15 22.45082299068813 29.806188834131426 25.967415432296974 21.77557274288347 16 21.549128146421143 28.49840846584484 26.828309762805567 23.12415362492845 17 21.650797861201468 26.727512599645397 27.04016529617892 24.581524242974215 18 23.07071856371023 25.40528277652906 29.86698823102375 21.657010428736964 19 22.658036549442265 24.597614094849853 31.145206550419523 21.59914280528836 20 23.735184073489787 24.140327241759625 31.029192087003864 21.095296597746724 21 22.425449189574056 25.185923299222384 31.70786273715953 20.680764774044032 22 20.931850228259506 25.630052073880687 31.21982716497508 22.218270532884727 23 22.109550601013556 25.89363246729677 32.21669993996844 19.78011699172123 24 21.99817811221712 25.901345823618925 29.35242708958662 22.748048974577337 25 21.790057099778025 26.133653966968684 30.82117578075919 21.2551131524941 26 21.6277275963646 26.996118890393557 30.635147775342393 20.741005737899453 27 20.305218556729816 27.06941322648648 30.222919487916904 22.4024487288668 28 21.03194935012355 26.545603037875722 30.328812352538776 22.093635259461948 29 21.42564464113697 26.547662259699283 29.576393639447712 22.450299459716035 30 21.249249605606668 26.625354255957784 31.74091499253096 20.384481145904594 31 22.025052702117858 26.483756579039213 31.297030532326293 20.194160186516637 32 21.50913038015329 26.25183235840232 30.13887531586369 22.1001619455807 33 21.14185595219813 26.31458627092379 30.85611274763015 21.687445029247932 34 20.261137248879642 27.210103449720087 31.338878108028872 21.1898811933714 35 19.8497117089447 29.544318641890854 30.007050217090843 20.5989194320736 36 22.47378854933058 26.77086096413464 29.897213419145878 20.858137067388906 37 21.255043348364488 27.660654204302727 29.707695207248463 21.376607240084322 38 21.07072554412319 25.908361138644963 31.36830054866046 21.652612768571387 39 20.571521311200772 25.787460386156447 32.055452400564015 21.58556590207877 40 19.31640815870667 26.565985843722515 31.611637744488963 22.50596825308185 41 20.962319730835276 25.352161833894094 31.68482737438747 22.000691060883163 42 19.584176799899485 27.514309846570523 31.010624188526993 21.890889165003003 43 19.985550545170252 27.273276187019224 30.136013346549582 22.60515992126094 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 183.0 1 366.0 2 549.0 3 1329.0 4 2109.0 5 2109.0 6 3424.5 7 4740.0 8 5452.0 9 6164.0 10 9467.5 11 12771.0 12 12771.0 13 24895.0 14 37019.0 15 59979.5 16 82940.0 17 74994.0 18 67048.0 19 67048.0 20 70699.5 21 74351.0 22 57712.0 23 41073.0 24 45029.0 25 48985.0 26 48985.0 27 53142.5 28 57300.0 29 62136.5 30 66973.0 31 74025.5 32 81078.0 33 81078.0 34 90802.5 35 100527.0 36 111081.0 37 121635.0 38 129572.0 39 137509.0 40 137509.0 41 142228.5 42 146948.0 43 157930.0 44 168912.0 45 180767.5 46 192623.0 47 192623.0 48 257585.5 49 322548.0 50 300703.0 51 278858.0 52 252484.0 53 226110.0 54 226110.0 55 199305.0 56 172500.0 57 144419.5 58 116339.0 59 101178.5 60 86018.0 61 86018.0 62 75415.0 63 64812.0 64 56405.0 65 47998.0 66 41198.0 67 34398.0 68 34398.0 69 29322.0 70 24246.0 71 20377.5 72 16509.0 73 13346.5 74 10184.0 75 10184.0 76 8110.0 77 6036.0 78 4721.5 79 3407.0 80 2599.5 81 1792.0 82 1792.0 83 1393.0 84 994.0 85 736.0 86 478.0 87 371.0 88 264.0 89 264.0 90 194.0 91 124.0 92 94.0 93 64.0 94 48.0 95 32.0 96 32.0 97 20.5 98 9.0 99 6.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2865160.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.62825984865885 #Duplication Level Percentage of deduplicated Percentage of total 1 78.8313876612008 35.18107652774428 2 11.917623396244407 10.637255874121031 3 3.8592547691048362 5.166954739733597 4 1.620886775818402 2.89349424865914 5 0.8630175438293614 1.9257485599984037 6 0.5097775608075935 1.3650291269242063 7 0.35840569734979677 1.1196515814796557 8 0.2501379769923645 0.8930578108186473 9 0.2027111031524168 0.8141979407124911 >10 1.3112439361420556 11.566784920655044 >50 0.15350049441985528 4.739544534800781 >100 0.10576496247904288 9.346725457214163 >500 0.0097571361589611 2.9575427248171335 >1k 0.0056654338987505905 5.094835358014155 >5k 4.7211949156254914E-4 1.6768105948634993 >10k+ 3.9343290963545765E-4 4.621289999443803 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 41846 1.4605118038783176 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35512 1.2394421253961385 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28947 1.0103100699437377 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14821 0.5172835024920075 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10473 0.3655293247148501 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9403 0.32818411537226544 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9268 0.3234723366234346 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8295 0.2895126275670469 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8170 0.28514986946627763 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7487 0.2613117592036745 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5127 0.1789428862611512 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4770 0.16648284912535424 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4666 0.16285303438551424 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4410 0.15391810579513884 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4286 0.14959024975917573 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3741 0.13056862443982187 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3660 0.1277415571905234 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3398 0.11859721621131107 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3393 0.11842270588728028 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3347 0.1168172109061972 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3318 0.11580505102681873 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3238 0.11301288584232644 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3176 0.11084895782434488 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3102 0.1082662050286895 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.490206480615393E-5 0.0 0.0 0.0 0.0 7 3.490206480615393E-5 0.0 0.0 0.0 0.0 8 2.094123888369236E-4 0.0 0.0 0.0 0.0 9 2.094123888369236E-4 0.0 0.0 2.094123888369236E-4 0.0 10 2.7921651844923145E-4 0.0 0.0 2.7921651844923145E-4 0.0 11 2.7921651844923145E-4 0.0 0.0 3.4902064806153934E-4 0.0 12 3.141185832553854E-4 0.0 0.0 5.23530972092309E-4 0.0 13 3.141185832553854E-4 3.490206480615393E-5 0.0 5.23530972092309E-4 0.0 14 3.141185832553854E-4 3.490206480615393E-5 0.0 6.980412961230787E-4 0.0 15 3.141185832553854E-4 3.490206480615393E-5 0.0 9.074536849600023E-4 0.0 16 3.141185832553854E-4 6.980412961230786E-5 0.0 0.0013611805274400034 0.0 17 3.8392271286769324E-4 6.980412961230786E-5 0.0 0.0022337321475938516 0.0 18 4.537268424800011E-4 6.980412961230786E-5 0.0 0.002966675508523084 0.0 19 4.537268424800011E-4 6.980412961230786E-5 0.0 0.0037694229990646246 0.0 20 4.88628907286155E-4 6.980412961230786E-5 0.0 0.006701196442781555 0.0 21 5.23530972092309E-4 6.980412961230786E-5 0.0 0.011517681386030798 0.0 22 5.23530972092309E-4 6.980412961230786E-5 0.0 0.017904759245556966 0.0 23 5.23530972092309E-4 6.980412961230786E-5 0.0 0.021953398763070824 0.0 24 5.23530972092309E-4 6.980412961230786E-5 0.0 0.027747141520892377 0.0 25 5.23530972092309E-4 6.980412961230786E-5 0.0 0.03231931201049854 0.0 26 5.23530972092309E-4 1.047061944184618E-4 0.0 0.04135894679529241 0.0 27 5.23530972092309E-4 1.047061944184618E-4 0.0 0.09975010121598794 0.0 28 5.23530972092309E-4 2.443144536430775E-4 0.0 0.21946418350109592 0.0 29 5.933351017046168E-4 2.443144536430775E-4 0.0 0.36901953119546554 0.0 30 5.933351017046168E-4 2.443144536430775E-4 0.0 0.5766868167920814 0.0 31 6.282371665107708E-4 2.443144536430775E-4 0.0 0.7885423501654358 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11435 0.0 23.280718 1 GTATTGG 1315 0.0 19.133081 1 ATTGGAC 1570 0.0 17.085987 3 GTCGTAC 65 0.0015807127 17.076923 1 TTGGACC 2095 0.0 16.424822 4 TAACGGC 385 0.0 16.337664 36 TTAACGG 400 0.0 15.725 35 GGACCCT 2035 0.0 15.545455 6 TGGACCC 2055 0.0 15.484185 5 AACGGCC 425 0.0 15.235294 37 GTATTAG 625 0.0 15.096 1 TATACTG 295 0.0 15.050847 5 ACCGTTA 370 0.0 15.0 8 TAATACT 740 0.0 14.75 4 GTATCAA 18100 0.0 14.708011 2 GGTAAAC 560 0.0 14.535715 35 TATTGGA 1765 0.0 14.46459 2 TCGGGTA 295 0.0 14.423729 25 TAGATGT 590 0.0 14.423729 4 TAGGTCG 130 4.4492535E-6 14.230769 21 >>END_MODULE