##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088478_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2187710 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.401885990373497 31.0 31.0 34.0 30.0 34.0 2 31.59036572489041 31.0 31.0 34.0 30.0 34.0 3 31.697210324951662 31.0 31.0 34.0 30.0 34.0 4 35.39071723400268 37.0 35.0 37.0 33.0 37.0 5 35.27601875934196 37.0 35.0 37.0 33.0 37.0 6 35.33625389105503 37.0 35.0 37.0 33.0 37.0 7 35.159848425979675 37.0 35.0 37.0 32.0 37.0 8 35.21855684711411 37.0 35.0 37.0 32.0 37.0 9 36.74848997353397 39.0 35.0 39.0 32.0 39.0 10 36.606776492313884 39.0 35.0 39.0 32.0 39.0 11 36.64111559575995 39.0 35.0 39.0 32.0 39.0 12 36.48566446192594 38.0 35.0 39.0 32.0 39.0 13 36.51129400149014 38.0 35.0 39.0 32.0 39.0 14 37.45167595339419 39.0 36.0 41.0 32.0 41.0 15 37.48414826462374 39.0 36.0 41.0 32.0 41.0 16 37.34607603384361 39.0 36.0 41.0 32.0 41.0 17 37.42135932093376 39.0 36.0 41.0 32.0 41.0 18 37.29726746232362 39.0 36.0 41.0 32.0 41.0 19 37.38195510373861 39.0 36.0 41.0 32.0 41.0 20 37.28355449305438 39.0 36.0 41.0 31.0 41.0 21 37.12687970526258 39.0 36.0 40.0 31.0 41.0 22 37.0299605523584 39.0 36.0 40.0 31.0 41.0 23 36.825928025195296 39.0 35.0 40.0 30.0 41.0 24 37.020913649432515 39.0 36.0 40.0 31.0 41.0 25 36.98895374615466 39.0 36.0 41.0 31.0 41.0 26 36.802162992352734 39.0 36.0 40.0 30.0 41.0 27 36.73685726170287 39.0 35.0 40.0 30.0 41.0 28 36.53342353419786 39.0 35.0 40.0 30.0 41.0 29 36.358167673046246 39.0 35.0 40.0 30.0 41.0 30 36.17652202531414 38.0 35.0 40.0 30.0 41.0 31 35.87591042688474 38.0 35.0 40.0 29.0 41.0 32 35.724946176595616 38.0 34.0 40.0 28.0 41.0 33 35.503921909211 38.0 34.0 40.0 27.0 41.0 34 35.37213981743467 38.0 34.0 40.0 27.0 41.0 35 35.130752247784216 38.0 34.0 40.0 25.0 41.0 36 34.9701294961398 38.0 33.0 40.0 25.0 41.0 37 34.80162772945226 38.0 33.0 40.0 24.0 41.0 38 34.709425837976696 38.0 33.0 40.0 24.0 41.0 39 34.591775418131284 38.0 33.0 40.0 24.0 41.0 40 34.45074027179105 38.0 33.0 40.0 23.0 41.0 41 34.21767556028907 38.0 33.0 40.0 22.0 41.0 42 33.977997540807515 38.0 33.0 40.0 21.0 41.0 43 33.62319868721174 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 7.0 15 22.0 16 30.0 17 99.0 18 182.0 19 479.0 20 1050.0 21 2098.0 22 3984.0 23 6806.0 24 10741.0 25 16065.0 26 23206.0 27 31884.0 28 42885.0 29 54919.0 30 68313.0 31 83774.0 32 101674.0 33 123480.0 34 149326.0 35 180281.0 36 227489.0 37 301295.0 38 379729.0 39 377885.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.32394147304716 21.43277673914733 14.069872149416513 23.173409638389 2 19.35078232489681 23.74025807808165 34.553482865644895 22.355476731376644 3 19.781369559950814 24.77618148657729 32.67055505528612 22.771893898185773 4 14.13130625174269 16.561792925022058 35.80986511009229 33.497035713142964 5 12.5052223557967 38.85039607626239 34.731980015632786 13.91240155230812 6 32.50023997696221 37.229843077921664 13.385914952164594 16.884001992951532 7 25.94644628401388 33.115312358585 21.309999954290102 19.628241403111016 8 27.24213904036641 34.503796206992696 18.755456619021718 19.49860813361917 9 24.616928203463896 14.44775587257909 21.608485585383804 39.32683033857321 10 16.743946866815072 27.72853806034621 32.965749573755204 22.561765499083517 11 33.27611977821558 22.58489470725096 23.214137157118632 20.92484835741483 12 21.08465015929899 27.501542709042788 30.579372951625217 20.834434180033 13 31.759693926525912 21.050596285613725 25.96623866965914 21.223471118201225 14 20.502168934639418 23.267023508600317 27.517358333599972 28.713449223160293 15 22.783915601245138 29.658272805810643 25.41310319923573 22.14470839370849 16 21.77656087872707 28.423511342911077 26.444912716950604 23.355015061411248 17 21.88873296734942 26.810134798487915 26.89460668918641 24.406525544976255 18 23.076367525860377 25.57317926050528 29.29597615771743 22.05447705591692 19 22.99587239624996 24.936714646822477 30.385243016670398 21.682169940257165 20 23.854852791274894 24.562761974850414 30.17388045033391 21.40850478354078 21 22.628090560449053 25.427821786251375 30.760795535057206 21.183292118242363 22 21.408779042926167 25.789524205676255 30.296337265908186 22.505359485489393 23 22.256971902125965 26.010211591115823 31.202033176243653 20.530783330514556 24 22.23393411375365 26.0525389562602 28.954980321889103 22.758546608097053 25 22.26218283044828 26.185874727454735 29.904831993271504 21.647110448825487 26 22.0458378852773 26.855113337691012 29.87585191821585 21.22319685881584 27 21.003789350508065 26.9708050884258 29.502219215526736 22.5231863455394 28 21.489457012126838 26.56782663150052 29.66069543038154 22.282020925991105 29 21.762710779765143 26.482577672543435 29.13951117835545 22.615200369335973 30 21.73514771153398 26.61920455636259 30.701875477097058 20.943772255006376 31 22.315206311622656 26.38690685694173 30.514373477289038 20.783513354146574 32 21.95240685465624 26.287807799022723 29.470587966412364 22.28919737990867 33 21.537955213442366 26.2595590823281 30.152853897454417 22.04963180677512 34 20.75796152140823 26.835458081738437 30.69049371260359 21.716086684249742 35 20.55510099601867 28.592089445127556 29.65703863857641 21.19577092027737 36 22.56601651955698 26.351298846739287 29.587605304176513 21.495079329527222 37 21.58393937039187 27.081285910838275 29.487454918613526 21.847319800156328 38 21.47185870156465 25.570436666651432 30.864191323347246 22.093513308436677 39 20.841016405282236 25.49117570427525 31.60455453419329 22.06325335624923 40 19.97869918773512 26.04723660814276 31.170539056821973 22.803525147300142 41 21.217803090903274 25.08673453062792 31.25761641168162 22.437845966787187 42 19.912739805550096 26.949184306877967 30.71376005046373 22.424315837108207 43 20.326048699324865 26.73123951529225 29.9849614437014 22.957750341681486 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 146.0 1 278.5 2 411.0 3 1003.5 4 1596.0 5 1596.0 6 2543.0 7 3490.0 8 3905.0 9 4320.0 10 6855.5 11 9391.0 12 9391.0 13 17997.5 14 26604.0 15 41661.0 16 56718.0 17 51226.5 18 45735.0 19 45735.0 20 49029.0 21 52323.0 22 41449.0 23 30575.0 24 34117.5 25 37660.0 26 37660.0 27 41379.5 28 45099.0 29 49057.0 30 53015.0 31 58292.0 32 63569.0 33 63569.0 34 71005.5 35 78442.0 36 85706.0 37 92970.0 38 98862.5 39 104755.0 40 104755.0 41 108673.0 42 112591.0 43 120149.0 44 127707.0 45 136423.5 46 145140.0 47 145140.0 48 187328.0 49 229516.0 50 215316.5 51 201117.0 52 185193.5 53 169270.0 54 169270.0 55 151044.5 56 132819.0 57 114368.0 58 95917.0 59 85313.0 60 74709.0 61 74709.0 62 65819.5 63 56930.0 64 49545.0 65 42160.0 66 36653.5 67 31147.0 68 31147.0 69 26827.0 70 22507.0 71 19133.5 72 15760.0 73 12877.5 74 9995.0 75 9995.0 76 8060.5 77 6126.0 78 4782.0 79 3438.0 80 2677.5 81 1917.0 82 1917.0 83 1483.0 84 1049.0 85 783.5 86 518.0 87 406.5 88 295.0 89 295.0 90 225.0 91 155.0 92 113.5 93 72.0 94 51.0 95 30.0 96 30.0 97 16.5 98 3.0 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2187710.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.86578703356584 #Duplication Level Percentage of deduplicated Percentage of total 1 80.87342090607473 41.13690204484328 2 10.932630463213485 11.121937057169825 3 3.3651957885197343 5.135199969152924 4 1.4102494317675063 2.8693378904197284 5 0.7912324410038948 2.0123330419076275 6 0.47395723364225445 1.446492462567895 7 0.33319795573432387 1.1863863379481132 8 0.2430671434023248 0.9891041240927888 9 0.18775107442795258 0.8595095550457864 >10 1.1865382461980467 11.573421112250504 >50 0.11506500200427988 4.042373021071443 >100 0.07832310121800004 7.5863673424886775 >500 0.004685606396728491 1.652684154784526 >1k 0.0038746360588331735 3.3927280078057613 >5k 4.505390766085086E-4 1.2591988403237915 >10k+ 3.6043126128680684E-4 3.7360250381273565 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27789 1.2702323434093186 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 24165 1.1045796746369492 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19101 0.8731047533722477 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10457 0.47798839882799826 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5941 0.2715625014284343 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5793 0.2647974365889446 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5367 0.24532502022662966 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5264 0.24061690077752537 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5108 0.2334861567575227 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4739 0.21661920455636258 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3122 0.14270630019518124 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2952 0.13493561760928094 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2810 0.12844481215517597 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2785 0.12730206471607297 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2742 0.12533653912081583 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2614 0.11948567223260852 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2500 0.11427474391029889 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2363 0.10801248794401451 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2216 0.10129313300208895 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 4.570989756411956E-5 0.0 0.0 0.0 0.0 6 4.570989756411956E-5 0.0 0.0 0.0 0.0 7 4.570989756411956E-5 0.0 0.0 0.0 0.0 8 4.570989756411956E-5 0.0 0.0 0.0 0.0 9 4.570989756411956E-5 0.0 0.0 2.2854948782059778E-4 0.0 10 9.141979512823912E-5 0.0 0.0 4.11389078077076E-4 0.0 11 9.141979512823912E-5 0.0 0.0 7.313583610259129E-4 0.0 12 9.141979512823912E-5 0.0 0.0 9.599078488465107E-4 0.0 13 9.141979512823912E-5 0.0 0.0 9.599078488465107E-4 0.0 14 9.141979512823912E-5 0.0 0.0 0.0012798771317953477 0.0 15 9.141979512823912E-5 0.0 0.0 0.0015998464147441846 0.0 16 1.3712969269235868E-4 0.0 0.0 0.002605464161154815 0.0 17 1.3712969269235868E-4 0.0 0.0 0.003748211600257804 0.0 18 1.3712969269235868E-4 0.0 0.0 0.004251020473463119 0.0 19 1.3712969269235868E-4 0.0 0.0 0.0051652184247455105 0.0 20 1.3712969269235868E-4 0.0 0.0 0.008136361766413282 0.0 21 1.3712969269235868E-4 0.0 0.0 0.013758679166799986 0.0 22 1.3712969269235868E-4 0.0 0.0 0.0226721091918033 0.0 23 1.3712969269235868E-4 0.0 0.0 0.02806587710436941 0.0 24 1.3712969269235868E-4 0.0 0.0 0.03629365866591093 0.0 25 1.3712969269235868E-4 0.0 0.0 0.042053105758989996 0.0 26 1.3712969269235868E-4 0.0 0.0 0.05192644363283982 0.0 27 1.3712969269235868E-4 0.0 0.0 0.1152346517591454 0.0 28 1.3712969269235868E-4 0.0 0.0 0.23970270282624295 0.0 29 1.3712969269235868E-4 0.0 0.0 0.39292227946117175 0.0 30 1.8283959025647823E-4 0.0 0.0 0.6127411768470227 0.0 31 1.8283959025647823E-4 0.0 0.0 0.865928299454681 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7960 0.0 22.892588 1 GTATTGG 1025 0.0 19.131706 1 TTGGACC 1415 0.0 17.519436 4 ATTGGAC 1135 0.0 16.951544 3 CTCTAAT 465 0.0 16.709677 1 TGGACCC 1405 0.0 16.590748 5 TATACTG 260 0.0 16.365383 5 TCTAATA 530 0.0 15.707547 2 GGACCCT 1475 0.0 15.677966 6 CTAATAC 555 0.0 15.666667 3 TATTGGA 1240 0.0 15.366935 2 GTATTAG 395 0.0 14.987342 1 GTATCAA 12285 0.0 14.803012 2 CGTTTAC 300 0.0 14.8 28 TAATACT 555 0.0 14.666667 4 CGAACTA 215 1.2732926E-11 14.627907 24 AGTTCCG 230 1.8189894E-12 14.478261 32 TGCTAGA 385 0.0 14.415584 16 TTTACCG 90 8.278228E-4 14.388888 30 CCGTTTA 310 0.0 14.32258 27 >>END_MODULE