##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088473_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2974337 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.420529684430512 31.0 31.0 34.0 30.0 34.0 2 31.61380435370975 31.0 31.0 34.0 30.0 34.0 3 31.72470369026778 31.0 31.0 34.0 30.0 34.0 4 35.418477126162905 37.0 35.0 37.0 33.0 37.0 5 35.29195447590505 37.0 35.0 37.0 33.0 37.0 6 35.35623468356141 37.0 35.0 37.0 33.0 37.0 7 35.18886494704534 37.0 35.0 37.0 32.0 37.0 8 35.23121757890918 37.0 35.0 37.0 32.0 37.0 9 36.778749011964685 39.0 37.0 39.0 32.0 39.0 10 36.6252274036197 39.0 35.0 39.0 32.0 39.0 11 36.66632664691325 39.0 35.0 39.0 32.0 39.0 12 36.513686915773164 38.0 35.0 39.0 32.0 39.0 13 36.53571199228601 38.0 35.0 39.0 32.0 39.0 14 37.50104880516229 39.0 36.0 41.0 32.0 41.0 15 37.53194980931885 39.0 36.0 41.0 32.0 41.0 16 37.394716536828206 39.0 36.0 41.0 32.0 41.0 17 37.46284466084374 39.0 36.0 41.0 32.0 41.0 18 37.33859142390388 39.0 36.0 41.0 32.0 41.0 19 37.421337931781096 39.0 36.0 41.0 32.0 41.0 20 37.32283228161435 39.0 36.0 41.0 31.0 41.0 21 37.167615841782556 39.0 36.0 40.0 31.0 41.0 22 37.07021531184933 39.0 36.0 40.0 31.0 41.0 23 36.875053163108284 39.0 36.0 40.0 30.0 41.0 24 37.079376008838274 39.0 36.0 41.0 31.0 41.0 25 37.03399715634106 39.0 36.0 41.0 31.0 41.0 26 36.862303767192486 39.0 36.0 40.0 30.0 41.0 27 36.79903689460878 39.0 35.0 40.0 30.0 41.0 28 36.612730837158 39.0 35.0 40.0 30.0 41.0 29 36.44940637190742 39.0 35.0 40.0 30.0 41.0 30 36.278159132606696 38.0 35.0 40.0 30.0 41.0 31 36.01013301451719 38.0 35.0 40.0 29.0 41.0 32 35.861400372587234 38.0 35.0 40.0 29.0 41.0 33 35.66023520535837 38.0 34.0 40.0 27.0 41.0 34 35.544439651592945 38.0 34.0 40.0 27.0 41.0 35 35.304340765689965 38.0 34.0 40.0 26.0 41.0 36 35.15490141164233 38.0 34.0 40.0 25.0 41.0 37 34.99876443052687 38.0 33.0 40.0 25.0 41.0 38 34.913322532046635 38.0 33.0 40.0 24.0 41.0 39 34.81704258797843 38.0 33.0 40.0 24.0 41.0 40 34.70024008711857 38.0 33.0 40.0 24.0 41.0 41 34.48577447679937 38.0 33.0 40.0 23.0 41.0 42 34.2623048430625 38.0 33.0 40.0 22.0 41.0 43 33.91678851454963 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 6.0 14 14.0 15 20.0 16 57.0 17 109.0 18 239.0 19 654.0 20 1381.0 21 2743.0 22 4963.0 23 8640.0 24 13738.0 25 20597.0 26 29385.0 27 41265.0 28 55053.0 29 71824.0 30 89740.0 31 110364.0 32 135594.0 33 164838.0 34 201200.0 35 243809.0 36 307793.0 37 408913.0 38 528572.0 39 532822.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3678409675837 21.391086484147557 13.658606943328882 23.582465604939856 2 19.309849556388535 23.519157378602358 34.468017578371246 22.702975486637865 3 19.67846952110672 24.76716659880841 32.48915640695725 23.065207473127625 4 13.956522075339814 16.61923312657577 36.13430488878698 33.28993990929743 5 12.511830367574353 38.76373121135904 35.02471307050949 13.699725350557115 6 32.478464948659145 37.48976662698275 13.588440045630337 16.443328378727763 7 26.224701504906804 32.82180196796799 21.527318525103244 19.426178002021963 8 27.17993959662271 34.46240288171784 18.8336089689904 19.52404855266905 9 24.858481066536843 14.2704743947979 21.361634542420717 39.50940999624454 10 16.532827315801807 27.664148346337353 33.441334993311116 22.361689344549728 11 33.605976726914264 22.559178734622204 23.06500574749936 20.769838790964172 12 21.146561401751047 27.371074629404806 30.629010767777824 20.853353201066323 13 31.195422711010888 21.128843167401676 25.836211565804412 21.83952255578302 14 20.681180377341235 22.945315208061494 27.49671607487652 28.87678833972075 15 23.021231286165623 29.5597976960916 25.301571409023254 22.117399608719523 16 22.190760495532285 28.319353186945527 26.286093337775778 23.20379297974641 17 21.9882615856912 26.921529066813882 26.860338959573177 24.229870387921746 18 22.86331374017134 25.865260056274725 29.15695161644427 22.114474587109665 19 23.009800167230544 25.09063364373304 30.100825831101186 21.79874035793523 20 23.678554245870593 24.872635481453514 29.94701003954831 21.501800233127586 21 22.681996021298193 25.711444264721848 30.24956486100936 21.356994852970594 22 21.63514087341145 26.119232622261702 29.804558125054427 22.441068379272423 23 22.463426303071913 26.19545128880823 30.69174743816857 20.649374969951285 24 22.509419746316574 26.31756253578529 28.25049750583071 22.92252021206743 25 22.360680716408396 26.33269195790524 29.523991397074372 21.78263592861199 26 22.14274979600496 27.023266025336067 29.508290419007665 21.32569375965131 27 21.32824895094268 26.923210113716102 29.028217044672477 22.720323890668745 28 21.586659480751507 26.683795413902324 29.38436364137621 22.345181463969954 29 22.099849479060378 26.553749625546804 28.791290294273985 22.555110601118837 30 21.8494407325061 26.734058716278618 30.324068859715624 21.09243169149965 31 22.30870274619184 26.588446433608564 30.08700762556496 21.015843194634638 32 21.812995635666034 26.3896794478904 29.245778134757426 22.551546781686138 33 21.57637147370994 26.45234887640506 29.832026431436653 22.139253218448346 34 21.097945525338922 26.716441344743387 30.36061481936983 21.824998310547862 35 20.78469924557977 28.529786638165078 29.239894470599666 21.445619645655487 36 22.7755630918756 26.52994600141141 29.03349553194544 21.660995374767552 37 21.648219418310703 27.03274712986457 29.175409511430615 22.14362394039411 38 21.528898709191328 25.83368999545109 30.43864901657075 22.198762278786834 39 20.987063671668675 25.78386376526937 31.049406977084303 22.17966558597765 40 20.229886525972006 26.31561252137871 30.748196993145026 22.706303959504254 41 21.292207305359142 25.138509859508183 30.94340015943049 22.625882675702183 42 20.073448301251673 26.941230936507864 30.503671910748515 22.481648851491943 43 20.500972149423554 26.428478010393576 29.863125799127673 23.207424041055198 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 188.0 1 358.0 2 528.0 3 1255.5 4 1983.0 5 1983.0 6 3167.5 7 4352.0 8 4878.5 9 5405.0 10 8405.0 11 11405.0 12 11405.0 13 21911.0 14 32417.0 15 50504.5 16 68592.0 17 62558.0 18 56524.0 19 56524.0 20 60619.5 21 64715.0 22 52042.0 23 39369.0 24 44217.5 25 49066.0 26 49066.0 27 54649.0 28 60232.0 29 66230.5 30 72229.0 31 81648.5 32 91068.0 33 91068.0 34 102273.0 35 113478.0 36 125054.0 37 136630.0 38 146056.0 39 155482.0 40 155482.0 41 159910.0 42 164338.0 43 175125.0 44 185912.0 45 192734.0 46 199556.0 47 199556.0 48 246717.5 49 293879.0 50 278397.5 51 262916.0 52 243141.5 53 223367.0 54 223367.0 55 201050.0 56 178733.0 57 154440.5 58 130148.0 59 116632.5 60 103117.0 61 103117.0 62 92013.5 63 80910.0 64 70208.5 65 59507.0 66 51339.0 67 43171.0 68 43171.0 69 36995.0 70 30819.0 71 25958.5 72 21098.0 73 17400.5 74 13703.0 75 13703.0 76 11169.5 77 8636.0 78 6781.5 79 4927.0 80 3858.0 81 2789.0 82 2789.0 83 2139.5 84 1490.0 85 1131.5 86 773.0 87 598.0 88 423.0 89 423.0 90 358.5 91 294.0 92 198.5 93 103.0 94 75.5 95 48.0 96 48.0 97 29.0 98 10.0 99 8.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2974337.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.313179283808324 #Duplication Level Percentage of deduplicated Percentage of total 1 79.27890706995721 38.30216050695222 2 11.727137086615246 11.3315055310288 3 3.8616878938850534 5.597112586661422 4 1.6302099578536948 3.1504250385614068 5 0.8472270641613445 2.04661165224608 6 0.519221500365876 1.505114486111071 7 0.32611133677154475 1.1028832835948224 8 0.23768141281666025 0.9186515767872131 9 0.18082008833745367 0.7862394011365311 >10 1.1554312258888124 10.836527256196726 >50 0.13049134091833453 4.355067658483815 >100 0.09083248039285664 8.711333157844011 >500 0.00879624655162173 2.961128829527649 >1k 0.004747180678638679 3.843355938364146 >5k 4.188688834092953E-4 1.2793760252567223 >10k+ 2.7924592227286345E-4 3.272507071247462 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33106 1.1130547748960524 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28600 0.9615588280682383 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22578 0.7590935391651988 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12742 0.4283979925610313 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7266 0.2442897358302035 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6797 0.22852151588740616 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6327 0.2127196750065645 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6326 0.21268605406852015 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5635 0.18945398587987844 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5581 0.18763845522548386 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3694 0.12419574513580674 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3457 0.11622758281929721 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3311 0.11131892586482299 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3309 0.11125168398873428 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3298 0.11088185367024651 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2989 0.10049298381454423 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.3620938044344E-5 0.0 3 0.0 0.0 0.0 3.3620938044344E-5 0.0 4 0.0 0.0 0.0 3.3620938044344E-5 0.0 5 3.3620938044344E-5 0.0 0.0 3.3620938044344E-5 0.0 6 6.7241876088688E-5 0.0 0.0 3.3620938044344E-5 0.0 7 6.7241876088688E-5 0.0 0.0 3.3620938044344E-5 0.0 8 1.00862814133032E-4 0.0 0.0 3.3620938044344E-5 0.0 9 2.01725628266064E-4 0.0 0.0 3.3620938044344E-4 0.0 10 2.01725628266064E-4 0.0 0.0 3.69830318487784E-4 0.0 11 2.01725628266064E-4 0.0 0.0 4.37072194576472E-4 0.0 12 2.01725628266064E-4 0.0 0.0 5.71555946753848E-4 0.0 13 2.35346566310408E-4 0.0 0.0 6.387978228425361E-4 0.0 14 4.03451256532128E-4 0.0 0.0 7.73281575019912E-4 0.0 15 4.03451256532128E-4 0.0 0.0 0.001075870017419008 0.0 16 4.03451256532128E-4 0.0 0.0 0.001580184088084168 0.0 17 4.03451256532128E-4 0.0 0.0 0.00235346566310408 0.0 18 4.03451256532128E-4 0.0 0.0 0.002756916919636208 0.0 19 5.0431407066516E-4 0.0 0.0 0.003160368176168336 0.0 20 5.0431407066516E-4 0.0 0.0 0.005345729149050696 0.0 21 5.0431407066516E-4 0.0 0.0 0.008539718263263376 0.0 22 5.0431407066516E-4 0.0 0.0 0.013414754279693256 0.0 23 5.0431407066516E-4 0.0 0.0 0.016944952774349376 0.0 24 5.0431407066516E-4 0.0 0.0 0.022559649427754826 0.0 25 5.0431407066516E-4 0.0 0.0 0.02696399231156389 0.0 26 5.37935008709504E-4 0.0 0.0 0.03627699214984718 0.0 27 5.37935008709504E-4 0.0 0.0 0.09420586840025189 0.0 28 5.37935008709504E-4 0.0 0.0 0.2040118520530794 0.0 29 6.05176884798192E-4 0.0 0.0 0.34273184242404275 0.0 30 6.05176884798192E-4 0.0 0.0 0.5327237633126307 0.0 31 7.06039698931224E-4 0.0 0.0 0.7517305537334875 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9860 0.0 22.909231 1 TAATACT 835 0.0 17.72455 4 GTATTGG 995 0.0 17.663317 1 AATACTG 985 0.0 16.715734 5 TACTGGT 830 0.0 16.493977 7 CTCTAAT 805 0.0 16.31677 1 GCGCATA 70 0.0025937918 15.857142 26 CTAATAC 910 0.0 15.653846 3 ATACTGG 900 0.0 15.416667 6 ATGCTAG 825 0.0 15.248486 15 GTATCAA 15050 0.0 14.984385 2 ACCGTTA 485 0.0 14.876288 8 TGCTAGA 810 0.0 14.845679 16 TAACACT 325 0.0 14.800001 4 TCTAATA 930 0.0 14.720431 2 GACCGTG 215 1.2732926E-11 14.627907 7 TTGGACC 1600 0.0 14.568749 4 ATTGGAC 1290 0.0 14.341085 3 GTATTAG 830 0.0 14.26506 1 GATGCTA 830 0.0 14.26506 14 >>END_MODULE